id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 9114 Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0 chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-13.2.1-arm64-arm-64bit ChimeraX Version: 1.6.dev202303282212 (2023-03-28 22:12:57 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Current thread 0x00000001f773c140 (most recent call first): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py"", line 284 in event_loop File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 892 in init File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 1043 in File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 87 in _run_code File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 197 in _run_module_as_main {""app_name"":""ChimeraX"",""timestamp"":""2023-06-01 17:23:32.00 +0200"",""app_version"":""1.6.0"",""slice_uuid"":""a5992708-d5b4-36ec-ac0a-e525f6105b56"",""build_version"":""1.6.0.0"",""platform"":1,""bundleID"":""edu.ucsf.cgl.ChimeraX"",""share_with_app_devs"":0,""is_first_party"":0,""bug_type"":""309"",""os_version"":""macOS 13.2.1 (22D68)"",""roots_installed"":0,""name"":""ChimeraX"",""incident_id"":""015405B5-5F20-45C0-A7D7-D7E14B35A8FA""} { ""uptime"" : 27000, ""procRole"" : ""Background"", ""version"" : 2, ""userID"" : 501, ""deployVersion"" : 210, ""modelCode"" : ""MacBookPro17,1"", ""coalitionID"" : 2569, ""osVersion"" : { ""train"" : ""macOS 13.2.1"", ""build"" : ""22D68"", ""releaseType"" : ""User"" }, ""captureTime"" : ""2023-06-01 17:23:28.9707 +0200"", ""incident"" : ""015405B5-5F20-45C0-A7D7-D7E14B35A8FA"", ""pid"" : 9511, ""translated"" : false, ""cpuType"" : ""ARM-64"", ""roots_installed"" : 0, ""bug_type"" : ""309"", ""procLaunch"" : ""2023-06-01 13:17:32.2297 +0200"", ""procStartAbsTime"" : 310625212656, ""procExitAbsTime"" : 664786987849, ""procName"" : ""ChimeraX"", ""procPath"" : ""\/Applications\/ChimeraX_Daily.app\/Contents\/MacOS\/ChimeraX"", ""bundleInfo"" : {""CFBundleShortVersionString"":""1.6.0"",""CFBundleVersion"":""1.6.0.0"",""CFBundleIdentifier"":""edu.ucsf.cgl.ChimeraX""}, ""storeInfo"" : {""deviceIdentifierForVendor"":""9273870C-30DB-5EED-A912-2D90B281157B"",""thirdParty"":true}, ""parentProc"" : ""launchd"", ""parentPid"" : 1, ""coalitionName"" : ""edu.ucsf.cgl.ChimeraX"", ""crashReporterKey"" : ""8860AA8B-6057-CF38-87BA-6AF1B2794A88"", ""throttleTimeout"" : 2147483647, ""sleepWakeUUID"" : ""B9FDD439-962A-4BE0-B0FA-59EF02194557"", ""sip"" : ""enabled"", ""vmRegionInfo"" : ""0x18 is not in any region. Bytes before following region: 105553518919656\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n MALLOC_NANO (reserved) 600018000000-600020000000 [128.0M] rw-\/rwx SM=NUL ...(unallocated)"", ""exception"" : {""codes"":""0x0000000000000001, 0x0000000000000018"",""rawCodes"":[1,24],""type"":""EXC_BAD_ACCESS"",""signal"":""SIGSEGV"",""subtype"":""KERN_INVALID_ADDRESS at 0x0000000000000018""}, ""vmregioninfo"" : ""0x18 is not in any region. Bytes before following region: 105553518919656\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n MALLOC_NANO (reserved) 600018000000-600020000000 [128.0M] rw-\/rwx SM=NUL ...(unallocated)"", ""extMods"" : {""caller"":{""thread_create"":0,""thread_set_state"":0,""task_for_pid"":0},""system"":{""thread_create"":0,""thread_set_state"":0,""task_for_pid"":0},""targeted"":{""thread_create"":0,""thread_set_state"":0,""task_for_pid"":0},""warnings"":0}, ""faultingThread"" : 0, ""threads"" : [{""triggered"":true,""id"":145807,""threadState"":{""x"":[{""value"":0},{""value"":0},{""value"":1},{""value"":6914168397},{""value"":5100796952},{""value"":151465679694695417},{""value"":0},{""value"":6124054856},{""value"":3382570159920949282},{""value"":3382570155436370274},{""value"":78},{""value"":0},{""value"":49},{""value"":4343509664},{""value"":5705329072},{""value"":0},{""value"":328},{""value"":8528721624},{""value"":0},{""value"":11},{""value"":8446525760,""symbolLocation"":0,""symbol"":""_main_thread""},{""value"":259},{""value"":8446525984,""symbolLocation"":224,""symbol"":""_main_thread""},{""value"":4447344992},{""value"":1},{""value"":32769},{""value"":32768},{""value"":8446532192,""symbolLocation"":0,""symbol"":""_NSConcreteStackBlock""},{""value"":1}],""flavor"":""ARM_THREAD_STATE64"",""lr"":{""value"":6913989868},""cpsr"":{""value"":1073745920},""fp"":{""value"":5100796752},""sp"":{""value"":5100796720},""esr"":{""value"":1442840704,""description"":"" Address size fault""},""pc"":{""value"":6913763432,""matchesCrashFrame"":1},""far"":{""value"":4346260624}},""name"":""CrBrowserMain"",""queue"":""com.apple.main-thread"",""frames"":[{""imageOffset"":39016,""symbol"":""__pthread_kill"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":27884,""symbol"":""pthread_kill"",""symbolLocation"":288,""imageIndex"":1},{""imageOffset"":268748,""symbol"":""raise"",""symbolLocation"":32,""imageIndex"":2},{""imageOffset"":17060,""symbol"":""_sigtramp"",""symbolLocation"":56,""imageIndex"":3},{""imageOffset"":3459388,""symbol"":""QMacCGContext::QMacCGContext(QPainter*)"",""symbolLocation"":40,""imageIndex"":4},{""imageOffset"":43052,""imageIndex"":5},{""imageOffset"":73708,""imageIndex"":5},{""imageOffset"":464432,""symbol"":""QCommonStyle::drawControl(QStyle::ControlElement, QStyleOption const*, QPainter*, QWidget const*) const"",""symbolLocation"":2132,""imageIndex"":6},{""imageOffset"":63388,""imageIndex"":5},{""imageOffset"":710016,""imageIndex"":6},{""imageOffset"":1933144,""symbol"":""QTabBar::paintEvent(QPaintEvent*)"",""symbolLocation"":1584,""imageIndex"":6},{""imageOffset"":344492,""symbol"":""QWidget::event(QEvent*)"",""symbolLocation"":132,""imageIndex"":6},{""imageOffset"":1931192,""symbol"":""QTabBar::event(QEvent*)"",""symbolLocation"":736,""imageIndex"":6},{""imageOffset"":42768,""symbol"":""QApplicationPrivate::notify_helper(QObject*, QEvent*)"",""symbolLocation"":272,""imageIndex"":6},{""imageOffset"":49644,""symbol"":""QApplication::notify(QObject*, QEvent*)"",""symbolLocation"":3396,""imageIndex"":6},{""imageOffset"":1427128,""symbol"":""sipQApplication::notify(QObject*, QEvent*)"",""symbolLocation"":248,""imageIndex"":7},{""imageOffset"":429724,""symbol"":""QCoreApplication::notifyInternal2(QObject*, QEvent*)"",""symbolLocation"":292,""imageIndex"":8},{""imageOffset"":291900,""symbol"":""QWidgetPrivate::drawWidget(QPaintDevice*, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)"",""symbolLocation"":3312,""imageIndex"":6},{""imageOffset"":322252,""symbol"":""QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)"",""symbolLocation"":864,""imageIndex"":6},{""imageOffset"":292156,""symbol"":""QWidgetPrivate::drawWidget(QPaintDevice*, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)"",""symbolLocation"":3568,""imageIndex"":6},{""imageOffset"":322252,""symbol"":""QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)"",""symbolLocation"":864,""imageIndex"":6},{""imageOffset"":292156,""symbol"":""QWidgetPrivate::drawWidget(QPaintDevice*, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)"",""symbolLocation"":3568,""imageIndex"":6},{""imageOffset"":322252,""symbol"":""QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)"",""symbolLocation"":864,""imageIndex"":6},{""imageOffset"":292156,""symbol"":""QWidgetPrivate::drawWidget(QPaintDevice*, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)"",""symbolLocation"":3568,""imageIndex"":6},{""imageOffset"":322252,""symbol"":""QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)"",""symbolLocation"":864,""imageIndex"":6},{""imageOffset"":292156,""symbol"":""QWidgetPrivate::drawWidget(QPaintDevice*, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)"",""symbolLocation"":3568,""imageIndex"":6},{""imageOffset"":322252,""symbol"":""QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)"",""symbolLocation"":864,""imageIndex"":6},{""imageOffset"":321980,""symbol"":""QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)"",""symbolLocation"":592,""imageIndex"":6},{""imageOffset"":321980,""symbol"":""QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)"",""symbolLocation"":592,""imageIndex"":6},{""imageOffset"":321980,""symbol"":""QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)"",""symbolLocation"":592,""imageIndex"":6},{""imageOffset"":321980,""symbol"":""QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)"",""symbolLocation"":592,""imageIndex"":6},{""imageOffset"":321980,""symbol"":""QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)"",""symbolLocation"":592,""imageIndex"":6},{""imageOffset"":321980,""symbol"":""QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)"",""symbolLocation"":592,""imageIndex"":6},{""imageOffset"":321980,""symbol"":""QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)"",""symbolLocation"":592,""imageIndex"":6},{""imageOffset"":292156,""symbol"":""QWidgetPrivate::drawWidget(QPaintDevice*, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)"",""symbolLocation"":3568,""imageIndex"":6},{""imageOffset"":413000,""symbol"":""QWidgetRepaintManager::paintAndFlush()"",""symbolLocation"":3904,""imageIndex"":6},{""imageOffset"":413644,""symbol"":""QWidgetRepaintManager::sync()"",""symbolLocation"":252,""imageIndex"":6},{""imageOffset"":345676,""symbol"":""QWidget::event(QEvent*)"",""symbolLocation"":1316,""imageIndex"":6},{""imageOffset"":1508896,""symbol"":""QMainWindow::event(QEvent*)"",""symbolLocation"":248,""imageIndex"":6},{""imageOffset"":684736,""symbol"":""sipQMainWindow::event(QEvent*)"",""symbolLocation"":224,""imageIndex"":7},{""imageOffset"":42768,""symbol"":""QApplicationPrivate::notify_helper(QObject*, QEvent*)"",""symbolLocation"":272,""imageIndex"":6},{""imageOffset"":49644,""symbol"":""QApplication::notify(QObject*, QEvent*)"",""symbolLocation"":3396,""imageIndex"":6},{""imageOffset"":1427128,""symbol"":""sipQApplication::notify(QObject*, QEvent*)"",""symbolLocation"":248,""imageIndex"":7},{""imageOffset"":429724,""symbol"":""QCoreApplication::notifyInternal2(QObject*, QEvent*)"",""symbolLocation"":292,""imageIndex"":8},{""imageOffset"":399932,""symbol"":""QWidgetRepaintManager::sendUpdateRequest(QWidget*, QWidgetRepaintManager::UpdateTime)"",""symbolLocation"":604,""imageIndex"":6},{""imageOffset"":399228,""symbol"":""void QWidgetRepaintManager::markDirty(QRect const&, QWidget*, QWidgetRepaintManager::UpdateTime, QWidgetRepaintManager::BufferState)"",""symbolLocation"":1748,""imageIndex"":6},{""imageOffset"":438296,""imageIndex"":6},{""imageOffset"":730904,""imageIndex"":8},{""imageOffset"":812196,""symbol"":""QWindowPrivate::emitScreenChangedRecursion(QScreen*)"",""symbolLocation"":80,""imageIndex"":4},{""imageOffset"":770088,""symbol"":""QScreen::~QScreen()"",""symbolLocation"":700,""imageIndex"":4},{""imageOffset"":770192,""symbol"":""QScreen::~QScreen()"",""symbolLocation"":12,""imageIndex"":4},{""imageOffset"":854364,""symbol"":""QWindowSystemInterface::handleScreenRemoved(QPlatformScreen*)"",""symbolLocation"":36,""imageIndex"":4},{""imageOffset"":195752,""imageIndex"":9},{""imageOffset"":189688,""imageIndex"":9},{""imageOffset"":274400,""imageIndex"":9},{""imageOffset"":490932,""symbol"":""QMetaMethod::invoke(QObject*, Qt::ConnectionType, QGenericReturnArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument) const"",""symbolLocation"":1072,""imageIndex"":8},{""imageOffset"":287828,""imageIndex"":9},{""imageOffset"":484684,""symbol"":""__CFNOTIFICATIONCENTER_IS_CALLING_OUT_TO_AN_OBSERVER__"",""symbolLocation"":128,""imageIndex"":10},{""imageOffset"":1130564,""symbol"":""___CFXRegistrationPost_block_invoke"",""symbolLocation"":88,""imageIndex"":10},{""imageOffset"":1130380,""symbol"":""_CFXRegistrationPost"",""symbolLocation"":440,""imageIndex"":10},{""imageOffset"":293732,""symbol"":""_CFXNotificationPost"",""symbolLocation"":708,""imageIndex"":10},{""imageOffset"":41868,""symbol"":""-[NSNotificationCenter postNotificationName:object:userInfo:]"",""symbolLocation"":88,""imageIndex"":11},{""imageOffset"":2107476,""symbol"":""__67-[NSWindow _updateSettingsSendingScreenChangeNotificationToScreen:]_block_invoke"",""symbolLocation"":496,""imageIndex"":12},{""imageOffset"":512468,""symbol"":""NSPerformVisuallyAtomicChange"",""symbolLocation"":108,""imageIndex"":12},{""imageOffset"":2106968,""symbol"":""-[NSWindow _updateSettingsSendingScreenChangeNotificationToScreen:]"",""symbolLocation"":96,""imageIndex"":12},{""imageOffset"":3422712,""symbol"":""-[NSWindow _screenChanged:]"",""symbolLocation"":136,""imageIndex"":12},{""imageOffset"":3422544,""symbol"":""-[NSWindow _displayChangedSoAdjustWindows:]"",""symbolLocation"":112,""imageIndex"":12},{""imageOffset"":11192196,""symbol"":""___NSApplicationPerformScreenInvalidationReactions_block_invoke"",""symbolLocation"":84,""imageIndex"":12},{""imageOffset"":216656,""symbol"":""-[NSApplication enumerateWindowsWithOptions:usingBlock:]"",""symbolLocation"":236,""imageIndex"":12},{""imageOffset"":11190924,""symbol"":""___NSApplicationReactToScreenInvalidation_block_invoke"",""symbolLocation"":848,""imageIndex"":12},{""imageOffset"":11189324,""symbol"":""_NSApplicationReactToScreenInvalidation"",""symbolLocation"":292,""imageIndex"":12},{""imageOffset"":1485884,""symbol"":""-[NSApplication(ScreenHandling) _reactToDockChanged]"",""symbolLocation"":156,""imageIndex"":12},{""imageOffset"":1484372,""symbol"":""_NSCGSDockMessageReceive"",""symbolLocation"":264,""imageIndex"":12},{""imageOffset"":365284,""symbol"":""DockCallback(unsigned int, unsigned int, void*, void*)"",""symbolLocation"":1528,""imageIndex"":13},{""imageOffset"":52956,""symbol"":""dockClientNotificationProc"",""symbolLocation"":232,""imageIndex"":14},{""imageOffset"":45588,""symbol"":""(anonymous namespace)::notify_datagram_handler(unsigned int, CGSDatagramType, void*, unsigned long, void*)"",""symbolLocation"":896,""imageIndex"":15},{""imageOffset"":3372244,""symbol"":""CGSDatagramReadStream::dispatchMainQueueDatagrams()"",""symbolLocation"":228,""imageIndex"":15},{""imageOffset"":3371984,""symbol"":""invocation function for block in CGSDatagramReadStream::mainQueueWakeup()"",""symbolLocation"":28,""imageIndex"":15},{""imageOffset"":10716,""symbol"":""_dispatch_call_block_and_release"",""symbolLocation"":32,""imageIndex"":16},{""imageOffset"":17668,""symbol"":""_dispatch_client_callout"",""symbolLocation"":20,""imageIndex"":16},{""imageOffset"":77084,""symbol"":""_dispatch_main_queue_drain"",""symbolLocation"":928,""imageIndex"":16},{""imageOffset"":76140,""symbol"":""_dispatch_main_queue_callback_4CF"",""symbolLocation"":44,""imageIndex"":16},{""imageOffset"":798016,""symbol"":""__CFRUNLOOP_IS_SERVICING_THE_MAIN_DISPATCH_QUEUE__"",""symbolLocation"":16,""imageIndex"":10},{""imageOffset"":526272,""symbol"":""__CFRunLoopRun"",""symbolLocation"":2036,""imageIndex"":10},{""imageOffset"":522360,""symbol"":""CFRunLoopRunSpecific"",""symbolLocation"":612,""imageIndex"":10},{""imageOffset"":204704,""symbol"":""RunCurrentEventLoopInMode"",""symbolLocation"":292,""imageIndex"":13},{""imageOffset"":204260,""symbol"":""ReceiveNextEventCommon"",""symbolLocation"":672,""imageIndex"":13},{""imageOffset"":203564,""symbol"":""_BlockUntilNextEventMatchingListInModeWithFilter"",""symbolLocation"":72,""imageIndex"":13},{""imageOffset"":235596,""symbol"":""_DPSNextEvent"",""symbolLocation"":632,""imageIndex"":12},{""imageOffset"":231900,""symbol"":""-[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:]"",""symbolLocation"":728,""imageIndex"":12},{""imageOffset"":183820,""symbol"":""-[NSApplication run]"",""symbolLocation"":464,""imageIndex"":12},{""imageOffset"":86032,""imageIndex"":9},{""imageOffset"":467648,""symbol"":""QEventLoop::exec(QFlags)"",""symbolLocation"":532,""imageIndex"":8},{""imageOffset"":431416,""symbol"":""QCoreApplication::exec()"",""symbolLocation"":128,""imageIndex"":8},{""imageOffset"":2498220,""symbol"":""meth_QApplication_exec(_object*, _object*)"",""symbolLocation"":96,""imageIndex"":7},{""imageOffset"":553436,""symbol"":""cfunction_call"",""symbolLocation"":172,""imageIndex"":17},{""imageOffset"":280688,""symbol"":""_PyObject_MakeTpCall"",""symbolLocation"":360,""imageIndex"":17},{""imageOffset"":1158088,""symbol"":""call_function"",""symbolLocation"":512,""imageIndex"":17},{""imageOffset"":1147400,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":23108,""imageIndex"":17},{""imageOffset"":282620,""symbol"":""function_code_fastcall"",""symbolLocation"":112,""imageIndex"":17},{""imageOffset"":290656,""symbol"":""method_vectorcall"",""symbolLocation"":168,""imageIndex"":17},{""imageOffset"":1157992,""symbol"":""call_function"",""symbolLocation"":416,""imageIndex"":17},{""imageOffset"":1147400,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":23108,""imageIndex"":17},{""imageOffset"":1161872,""symbol"":""_PyEval_EvalCode"",""symbolLocation"":2988,""imageIndex"":17},{""imageOffset"":282496,""symbol"":""_PyFunction_Vectorcall"",""symbolLocation"":256,""imageIndex"":17},{""imageOffset"":1157992,""symbol"":""call_function"",""symbolLocation"":416,""imageIndex"":17},{""imageOffset"":1147524,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":23232,""imageIndex"":17},{""imageOffset"":1161872,""symbol"":""_PyEval_EvalCode"",""symbolLocation"":2988,""imageIndex"":17},{""imageOffset"":1124092,""symbol"":""PyEval_EvalCode"",""symbolLocation"":80,""imageIndex"":17},{""imageOffset"":1111204,""symbol"":""builtin_exec"",""symbolLocation"":672,""imageIndex"":17},{""imageOffset"":551308,""symbol"":""cfunction_vectorcall_FASTCALL"",""symbolLocation"":232,""imageIndex"":17},{""imageOffset"":1157992,""symbol"":""call_function"",""symbolLocation"":416,""imageIndex"":17},{""imageOffset"":1147524,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":23232,""imageIndex"":17},{""imageOffset"":1161872,""symbol"":""_PyEval_EvalCode"",""symbolLocation"":2988,""imageIndex"":17},{""imageOffset"":282496,""symbol"":""_PyFunction_Vectorcall"",""symbolLocation"":256,""imageIndex"":17},{""imageOffset"":1157992,""symbol"":""call_function"",""symbolLocation"":416,""imageIndex"":17},{""imageOffset"":1147524,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":23232,""imageIndex"":17},{""imageOffset"":1161872,""symbol"":""_PyEval_EvalCode"",""symbolLocation"":2988,""imageIndex"":17},{""imageOffset"":282496,""symbol"":""_PyFunction_Vectorcall"",""symbolLocation"":256,""imageIndex"":17},{""imageOffset"":1531556,""symbol"":""pymain_run_module"",""symbolLocation"":200,""imageIndex"":17},{""imageOffset"":1529064,""symbol"":""Py_RunMain"",""symbolLocation"":764,""imageIndex"":17},{""imageOffset"":1531220,""symbol"":""pymain_main"",""symbolLocation"":340,""imageIndex"":17},{""imageOffset"":1530868,""symbol"":""Py_Main"",""symbolLocation"":36,""imageIndex"":17},{""imageOffset"":15700,""symbol"":""main"",""symbolLocation"":128,""imageIndex"":18},{""imageOffset"":24144,""symbol"":""start"",""symbolLocation"":2544,""imageIndex"":19}]},{""id"":145821,""frames"":[{""imageOffset"":18508,""symbol"":""__psynch_cvwait"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":30264,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1232,""imageIndex"":1},{""imageOffset"":1481568,""symbol"":""blas_thread_server"",""symbolLocation"":360,""imageIndex"":20},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":145822,""frames"":[{""imageOffset"":18508,""symbol"":""__psynch_cvwait"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":30264,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1232,""imageIndex"":1},{""imageOffset"":1481568,""symbol"":""blas_thread_server"",""symbolLocation"":360,""imageIndex"":20},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":145823,""frames"":[{""imageOffset"":18508,""symbol"":""__psynch_cvwait"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":30264,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1232,""imageIndex"":1},{""imageOffset"":1481568,""symbol"":""blas_thread_server"",""symbolLocation"":360,""imageIndex"":20},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":145824,""frames"":[{""imageOffset"":18508,""symbol"":""__psynch_cvwait"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":30264,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1232,""imageIndex"":1},{""imageOffset"":1481568,""symbol"":""blas_thread_server"",""symbolLocation"":360,""imageIndex"":20},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":145825,""frames"":[{""imageOffset"":18508,""symbol"":""__psynch_cvwait"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":30264,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1232,""imageIndex"":1},{""imageOffset"":1481568,""symbol"":""blas_thread_server"",""symbolLocation"":360,""imageIndex"":20},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":145826,""frames"":[{""imageOffset"":18508,""symbol"":""__psynch_cvwait"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":30264,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1232,""imageIndex"":1},{""imageOffset"":1481568,""symbol"":""blas_thread_server"",""symbolLocation"":360,""imageIndex"":20},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":145827,""frames"":[{""imageOffset"":18508,""symbol"":""__psynch_cvwait"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":30264,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1232,""imageIndex"":1},{""imageOffset"":1481568,""symbol"":""blas_thread_server"",""symbolLocation"":360,""imageIndex"":20},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":145916,""name"":""ThreadPoolServiceThread"",""frames"":[{""imageOffset"":53036,""symbol"":""kevent64"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":62151504,""imageIndex"":21},{""imageOffset"":62151152,""imageIndex"":21},{""imageOffset"":61790700,""imageIndex"":21},{""imageOffset"":61535376,""imageIndex"":21},{""imageOffset"":61932820,""imageIndex"":21},{""imageOffset"":61835128,""imageIndex"":21},{""imageOffset"":61933196,""imageIndex"":21},{""imageOffset"":62101416,""imageIndex"":21},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":145918,""name"":""ThreadPoolBackgroundWorker"",""frames"":[{""imageOffset"":4176,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":78108,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":0},{""imageOffset"":39972,""symbol"":""mach_msg_overwrite"",""symbolLocation"":452,""imageIndex"":0},{""imageOffset"":5068,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":0},{""imageOffset"":62126188,""imageIndex"":21},{""imageOffset"":61883116,""imageIndex"":21},{""imageOffset"":61885944,""imageIndex"":21},{""imageOffset"":61884684,""imageIndex"":21},{""imageOffset"":62101416,""imageIndex"":21},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":145919,""name"":""Chrome_IOThread"",""frames"":[{""imageOffset"":12000,""symbol"":""__ulock_wake"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":8320,""symbol"":""_os_unfair_lock_unlock_slow"",""symbolLocation"":56,""imageIndex"":3},{""imageOffset"":32227956,""imageIndex"":21},{""imageOffset"":32360400,""imageIndex"":21},{""imageOffset"":32287752,""imageIndex"":21},{""imageOffset"":32306648,""imageIndex"":21},{""imageOffset"":32308388,""imageIndex"":21},{""imageOffset"":101197392,""imageIndex"":21},{""imageOffset"":101196960,""imageIndex"":21},{""imageOffset"":32296896,""imageIndex"":21},{""imageOffset"":32279684,""imageIndex"":21},{""imageOffset"":32238036,""imageIndex"":21},{""imageOffset"":70524800,""imageIndex"":21},{""imageOffset"":74433560,""imageIndex"":21},{""imageOffset"":74433688,""imageIndex"":21},{""imageOffset"":61688480,""imageIndex"":21},{""imageOffset"":61788980,""imageIndex"":21},{""imageOffset"":61788244,""imageIndex"":21},{""imageOffset"":62151224,""imageIndex"":21},{""imageOffset"":61790700,""imageIndex"":21},{""imageOffset"":61535376,""imageIndex"":21},{""imageOffset"":61932820,""imageIndex"":21},{""imageOffset"":25214976,""imageIndex"":21},{""imageOffset"":61933196,""imageIndex"":21},{""imageOffset"":62101416,""imageIndex"":21},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":145920,""name"":""NetworkConfigWatcher"",""frames"":[{""imageOffset"":4176,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":78108,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":0},{""imageOffset"":39972,""symbol"":""mach_msg_overwrite"",""symbolLocation"":452,""imageIndex"":0},{""imageOffset"":5068,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":0},{""imageOffset"":62126188,""imageIndex"":21},{""imageOffset"":62125656,""imageIndex"":21},{""imageOffset"":61342164,""imageIndex"":21},{""imageOffset"":61790700,""imageIndex"":21},{""imageOffset"":61535376,""imageIndex"":21},{""imageOffset"":61932820,""imageIndex"":21},{""imageOffset"":61933196,""imageIndex"":21},{""imageOffset"":62101416,""imageIndex"":21},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":145922,""name"":""ThreadPoolForegroundWorker"",""frames"":[{""imageOffset"":4176,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":78108,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":0},{""imageOffset"":39972,""symbol"":""mach_msg_overwrite"",""symbolLocation"":452,""imageIndex"":0},{""imageOffset"":5068,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":0},{""imageOffset"":62126188,""imageIndex"":21},{""imageOffset"":61883116,""imageIndex"":21},{""imageOffset"":61885944,""imageIndex"":21},{""imageOffset"":61884816,""imageIndex"":21},{""imageOffset"":62101416,""imageIndex"":21},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":145923,""name"":""Chrome_InProcGpuThread"",""frames"":[{""imageOffset"":4176,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":78108,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":0},{""imageOffset"":39972,""symbol"":""mach_msg_overwrite"",""symbolLocation"":452,""imageIndex"":0},{""imageOffset"":5068,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":0},{""imageOffset"":62126188,""imageIndex"":21},{""imageOffset"":62125656,""imageIndex"":21},{""imageOffset"":61342164,""imageIndex"":21},{""imageOffset"":61790700,""imageIndex"":21},{""imageOffset"":61535376,""imageIndex"":21},{""imageOffset"":61932820,""imageIndex"":21},{""imageOffset"":61933196,""imageIndex"":21},{""imageOffset"":62101416,""imageIndex"":21},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":145924,""name"":""Chrome_ChildIOThread"",""frames"":[{""imageOffset"":53036,""symbol"":""kevent64"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":62151504,""imageIndex"":21},{""imageOffset"":62151152,""imageIndex"":21},{""imageOffset"":61790700,""imageIndex"":21},{""imageOffset"":61535376,""imageIndex"":21},{""imageOffset"":61932820,""imageIndex"":21},{""imageOffset"":102133716,""imageIndex"":21},{""imageOffset"":61933196,""imageIndex"":21},{""imageOffset"":62101416,""imageIndex"":21},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":145925,""name"":""CompositorTileWorker1"",""frames"":[{""imageOffset"":18508,""symbol"":""__psynch_cvwait"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":30264,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1232,""imageIndex"":1},{""imageOffset"":62096196,""imageIndex"":21},{""imageOffset"":92829352,""imageIndex"":21},{""imageOffset"":62101416,""imageIndex"":21},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":145926,""name"":""ThreadPoolSingleThreadSharedForeground0"",""frames"":[{""imageOffset"":4176,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":78108,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":0},{""imageOffset"":39972,""symbol"":""mach_msg_overwrite"",""symbolLocation"":452,""imageIndex"":0},{""imageOffset"":5068,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":0},{""imageOffset"":62126188,""imageIndex"":21},{""imageOffset"":61883116,""imageIndex"":21},{""imageOffset"":61885944,""imageIndex"":21},{""imageOffset"":61884860,""imageIndex"":21},{""imageOffset"":62101416,""imageIndex"":21},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":145927,""name"":""NetworkConfigWatcher"",""frames"":[{""imageOffset"":4176,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":78108,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":0},{""imageOffset"":39972,""symbol"":""mach_msg_overwrite"",""symbolLocation"":452,""imageIndex"":0},{""imageOffset"":5068,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":0},{""imageOffset"":62126188,""imageIndex"":21},{""imageOffset"":62125656,""imageIndex"":21},{""imageOffset"":61342164,""imageIndex"":21},{""imageOffset"":61790700,""imageIndex"":21},{""imageOffset"":61535376,""imageIndex"":21},{""imageOffset"":61932820,""imageIndex"":21},{""imageOffset"":61933196,""imageIndex"":21},{""imageOffset"":62101416,""imageIndex"":21},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":145928,""name"":""VizCompositorThread"",""frames"":[{""imageOffset"":21718780,""imageIndex"":21},{""imageOffset"":21721128,""imageIndex"":21},{""imageOffset"":21721128,""imageIndex"":21},{""imageOffset"":21552596,""imageIndex"":21},{""imageOffset"":21706164,""imageIndex"":21},{""imageOffset"":21565996,""imageIndex"":21},{""imageOffset"":70536400,""imageIndex"":21},{""imageOffset"":70554000,""imageIndex"":21},{""imageOffset"":70541784,""imageIndex"":21},{""imageOffset"":70570892,""imageIndex"":21},{""imageOffset"":70569080,""imageIndex"":21},{""imageOffset"":70554000,""imageIndex"":21},{""imageOffset"":70523088,""imageIndex"":21},{""imageOffset"":70525600,""imageIndex"":21},{""imageOffset"":61688480,""imageIndex"":21},{""imageOffset"":61788980,""imageIndex"":21},{""imageOffset"":61788244,""imageIndex"":21},{""imageOffset"":61342100,""imageIndex"":21},{""imageOffset"":61790700,""imageIndex"":21},{""imageOffset"":61535376,""imageIndex"":21},{""imageOffset"":61932820,""imageIndex"":21},{""imageOffset"":61933196,""imageIndex"":21},{""imageOffset"":62101416,""imageIndex"":21},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":145929,""name"":""NetworkService"",""frames"":[{""imageOffset"":53036,""symbol"":""kevent64"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":62151504,""imageIndex"":21},{""imageOffset"":62151152,""imageIndex"":21},{""imageOffset"":61790700,""imageIndex"":21},{""imageOffset"":61535376,""imageIndex"":21},{""imageOffset"":61932820,""imageIndex"":21},{""imageOffset"":61933196,""imageIndex"":21},{""imageOffset"":62101416,""imageIndex"":21},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":145930,""name"":""NetworkConfigWatcher"",""frames"":[{""imageOffset"":4176,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":78108,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":0},{""imageOffset"":39972,""symbol"":""mach_msg_overwrite"",""symbolLocation"":452,""imageIndex"":0},{""imageOffset"":5068,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":0},{""imageOffset"":62126188,""imageIndex"":21},{""imageOffset"":62125656,""imageIndex"":21},{""imageOffset"":61342164,""imageIndex"":21},{""imageOffset"":61790700,""imageIndex"":21},{""imageOffset"":61535376,""imageIndex"":21},{""imageOffset"":61932820,""imageIndex"":21},{""imageOffset"":61933196,""imageIndex"":21},{""imageOffset"":62101416,""imageIndex"":21},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":145931,""name"":""ThreadPoolSingleThreadForegroundBlocking1"",""frames"":[{""imageOffset"":4176,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":78108,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":0},{""imageOffset"":39972,""symbol"":""mach_msg_overwrite"",""symbolLocation"":452,""imageIndex"":0},{""imageOffset"":5068,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":0},{""imageOffset"":62126188,""imageIndex"":21},{""imageOffset"":61883116,""imageIndex"":21},{""imageOffset"":61885944,""imageIndex"":21},{""imageOffset"":61884904,""imageIndex"":21},{""imageOffset"":62101416,""imageIndex"":21},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":145960,""name"":""NetworkConfigWatcher"",""frames"":[{""imageOffset"":4176,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":78108,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":0},{""imageOffset"":39972,""symbol"":""mach_msg_overwrite"",""symbolLocation"":452,""imageIndex"":0},{""imageOffset"":5068,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":0},{""imageOffset"":62126188,""imageIndex"":21},{""imageOffset"":62125656,""imageIndex"":21},{""imageOffset"":61342164,""imageIndex"":21},{""imageOffset"":61790700,""imageIndex"":21},{""imageOffset"":61535376,""imageIndex"":21},{""imageOffset"":61932820,""imageIndex"":21},{""imageOffset"":61933196,""imageIndex"":21},{""imageOffset"":62101416,""imageIndex"":21},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":146012,""name"":""com.apple.NSEventThread"",""frames"":[{""imageOffset"":4176,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":78108,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":0},{""imageOffset"":39972,""symbol"":""mach_msg_overwrite"",""symbolLocation"":452,""imageIndex"":0},{""imageOffset"":5068,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":0},{""imageOffset"":39816,""symbol"":""CGSSnarfAndDispatchDatagrams"",""symbolLocation"":160,""imageIndex"":15},{""imageOffset"":3349148,""symbol"":""SLSGetNextEventRecordInternal"",""symbolLocation"":344,""imageIndex"":15},{""imageOffset"":1257392,""symbol"":""SLEventCreateNextEvent"",""symbolLocation"":16,""imageIndex"":15},{""imageOffset"":257108,""symbol"":""PullEventsFromWindowServerOnConnection(unsigned int, unsigned char, __CFMachPortBoost*)"",""symbolLocation"":312,""imageIndex"":13},{""imageOffset"":256736,""symbol"":""MessageHandler(__CFMachPort*, void*, long, void*)"",""symbolLocation"":60,""imageIndex"":13},{""imageOffset"":726032,""symbol"":""__CFMachPortPerform"",""symbolLocation"":260,""imageIndex"":10},{""imageOffset"":532376,""symbol"":""__CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE1_PERFORM_FUNCTION__"",""symbolLocation"":60,""imageIndex"":10},{""imageOffset"":532152,""symbol"":""__CFRunLoopDoSource1"",""symbolLocation"":520,""imageIndex"":10},{""imageOffset"":526500,""symbol"":""__CFRunLoopRun"",""symbolLocation"":2264,""imageIndex"":10},{""imageOffset"":522360,""symbol"":""CFRunLoopRunSpecific"",""symbolLocation"":612,""imageIndex"":10},{""imageOffset"":1458588,""symbol"":""_NSEventThread"",""symbolLocation"":172,""imageIndex"":12},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":146038,""name"":""MemoryInfra"",""frames"":[{""imageOffset"":4176,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":78108,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":0},{""imageOffset"":39972,""symbol"":""mach_msg_overwrite"",""symbolLocation"":452,""imageIndex"":0},{""imageOffset"":5068,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":0},{""imageOffset"":62126188,""imageIndex"":21},{""imageOffset"":62125656,""imageIndex"":21},{""imageOffset"":61342164,""imageIndex"":21},{""imageOffset"":61790700,""imageIndex"":21},{""imageOffset"":61535376,""imageIndex"":21},{""imageOffset"":61932820,""imageIndex"":21},{""imageOffset"":61933196,""imageIndex"":21},{""imageOffset"":62101416,""imageIndex"":21},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":146039,""name"":""ThreadPoolSingleThreadSharedBackgroundBlocking2"",""frames"":[{""imageOffset"":4176,""symbol"":""mach_msg2_trap"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":78108,""symbol"":""mach_msg2_internal"",""symbolLocation"":80,""imageIndex"":0},{""imageOffset"":39972,""symbol"":""mach_msg_overwrite"",""symbolLocation"":452,""imageIndex"":0},{""imageOffset"":5068,""symbol"":""mach_msg"",""symbolLocation"":24,""imageIndex"":0},{""imageOffset"":62126188,""imageIndex"":21},{""imageOffset"":61883116,""imageIndex"":21},{""imageOffset"":61885188,""imageIndex"":21},{""imageOffset"":61884728,""imageIndex"":21},{""imageOffset"":62101416,""imageIndex"":21},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":249843,""name"":""QFileInfoGatherer"",""frames"":[{""imageOffset"":18508,""symbol"":""__psynch_cvwait"",""symbolLocation"":8,""imageIndex"":0},{""imageOffset"":30264,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1232,""imageIndex"":1},{""imageOffset"":1943672,""imageIndex"":8},{""imageOffset"":1943500,""symbol"":""QWaitCondition::wait(QMutex*, QDeadlineTimer)"",""symbolLocation"":108,""imageIndex"":8},{""imageOffset"":4145916,""symbol"":""QFileInfoGatherer::run()"",""symbolLocation"":120,""imageIndex"":4},{""imageOffset"":1903312,""imageIndex"":8},{""imageOffset"":28780,""symbol"":""_pthread_start"",""symbolLocation"":148,""imageIndex"":1},{""imageOffset"":7724,""symbol"":""thread_start"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":346662,""frames"":[{""imageOffset"":7704,""symbol"":""start_wqthread"",""symbolLocation"":0,""imageIndex"":1}]},{""id"":346663,""frames"":[{""imageOffset"":7704,""symbol"":""start_wqthread"",""symbolLocation"":0,""imageIndex"":1}]},{""id"":346819,""queue"":""glmtl.ioSurfaceNotifierQueue"",""frames"":[{""imageOffset"":61204,""symbol"":""IOSurfaceNotifierNotifyFunc"",""symbolLocation"":0,""imageIndex"":22},{""imageOffset"":22424,""symbol"":""IODispatchCalloutFromCFMessage"",""symbolLocation"":352,""imageIndex"":23},{""imageOffset"":22056,""symbol"":""_IODispatchCalloutWithDispatch"",""symbolLocation"":44,""imageIndex"":23},{""imageOffset"":141924,""symbol"":""dispatch_mig_server"",""symbolLocation"":424,""imageIndex"":16},{""imageOffset"":17668,""symbol"":""_dispatch_client_callout"",""symbolLocation"":20,""imageIndex"":16},{""imageOffset"":31124,""symbol"":""_dispatch_continuation_pop"",""symbolLocation"":504,""imageIndex"":16},{""imageOffset"":110496,""symbol"":""_dispatch_source_invoke"",""symbolLocation"":1588,""imageIndex"":16},{""imageOffset"":47764,""symbol"":""_dispatch_lane_serial_drain"",""symbolLocation"":376,""imageIndex"":16},{""imageOffset"":50952,""symbol"":""_dispatch_lane_invoke"",""symbolLocation"":384,""imageIndex"":16},{""imageOffset"":95052,""symbol"":""_dispatch_workloop_worker_thread"",""symbolLocation"":652,""imageIndex"":16},{""imageOffset"":12544,""symbol"":""_pthread_wqthread"",""symbolLocation"":288,""imageIndex"":1},{""imageOffset"":7712,""symbol"":""start_wqthread"",""symbolLocation"":8,""imageIndex"":1}]},{""id"":348995,""frames"":[{""imageOffset"":7704,""symbol"":""start_wqthread"",""symbolLocation"":0,""imageIndex"":1}]},{""id"":349327,""frames"":[{""imageOffset"":7704,""symbol"":""start_wqthread"",""symbolLocation"":0,""imageIndex"":1}]},{""id"":357132,""frames"":[{""imageOffset"":7704,""symbol"":""start_wqthread"",""symbolLocation"":0,""imageIndex"":1}]}], ""usedImages"" : [ { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 6913724416, ""size"" : 237548, ""uuid"" : ""3dcd49b9-b3c5-3d90-be40-a3b807cb9cd7"", ""path"" : ""\/usr\/lib\/system\/libsystem_kernel.dylib"", ""name"" : ""libsystem_kernel.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 6913961984, ""size"" : 53244, ""uuid"" : ""9f3b729a-ed04-3e65-adac-d75ad06ebbdc"", ""path"" : ""\/usr\/lib\/system\/libsystem_pthread.dylib"", ""name"" : ""libsystem_pthread.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 6912675840, ""size"" : 528380, ""uuid"" : ""14cd841b-0c7b-34a2-a342-cc6796ef9259"", ""path"" : ""\/usr\/lib\/system\/libsystem_c.dylib"", ""name"" : ""libsystem_c.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 6914162688, ""size"" : 32764, ""uuid"" : ""4cf75103-429d-3aae-ba13-2c1f67e47dbb"", ""path"" : ""\/usr\/lib\/system\/libsystem_platform.dylib"", ""name"" : ""libsystem_platform.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4717035520, ""size"" : 6373376, ""uuid"" : ""e580e17d-2c19-39bf-bdd1-9f96d62b6172"", ""path"" : ""\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtGui.framework\/Versions\/A\/QtGui"", ""name"" : ""QtGui"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4794695680, ""size"" : 147456, ""uuid"" : ""24eae0c3-412b-3e2e-a94a-e55cf2c2eb3a"", ""path"" : ""\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/plugins\/styles\/libqmacstyle.dylib"", ""name"" : ""libqmacstyle.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4736057344, ""size"" : 4538368, ""uuid"" : ""8969d043-f519-3f5e-8c7b-d70f69867f8b"", ""path"" : ""\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtWidgets.framework\/Versions\/A\/QtWidgets"", ""name"" : ""QtWidgets"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4729634816, ""size"" : 3080192, ""uuid"" : ""7665a44d-b6d3-323b-bb24-6ce940fbfbeb"", ""path"" : ""\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/QtWidgets.abi3.so"", ""name"" : ""QtWidgets.abi3.so"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4449894400, ""size"" : 4653056, ""uuid"" : ""8411e169-c5ca-3d70-9962-1ecf4565ae8d"", ""path"" : ""\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtCore.framework\/Versions\/A\/QtCore"", ""name"" : ""QtCore"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4761452544, ""size"" : 622592, ""uuid"" : ""9bbd9cd5-9744-3792-98aa-5f539f0bbb36"", ""path"" : ""\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/plugins\/platforms\/libqcocoa.dylib"", ""name"" : ""libqcocoa.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 6914375680, ""CFBundleShortVersionString"" : ""6.9"", ""CFBundleIdentifier"" : ""com.apple.CoreFoundation"", ""size"" : 5079040, ""uuid"" : ""18260df4-69a8-30d3-8175-fb8ae7ae7709"", ""path"" : ""\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation"", ""name"" : ""CoreFoundation"", ""CFBundleVersion"" : ""1953.300"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 6930288640, ""CFBundleShortVersionString"" : ""6.9"", ""CFBundleIdentifier"" : ""com.apple.Foundation"", ""size"" : 10723328, ""uuid"" : ""c62e0110-c636-396a-9cb6-c3c08392b3fa"", ""path"" : ""\/System\/Library\/Frameworks\/Foundation.framework\/Versions\/C\/Foundation"", ""name"" : ""Foundation"", ""CFBundleVersion"" : ""1953.300"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 6967640064, ""CFBundleShortVersionString"" : ""6.9"", ""CFBundleIdentifier"" : ""com.apple.AppKit"", ""size"" : 15777792, ""uuid"" : ""88722053-0df0-3d4f-bf55-7e3c2d2c8e29"", ""path"" : ""\/System\/Library\/Frameworks\/AppKit.framework\/Versions\/C\/AppKit"", ""name"" : ""AppKit"", ""CFBundleVersion"" : ""2299.40.118"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 7072899072, ""CFBundleShortVersionString"" : ""2.1.1"", ""CFBundleIdentifier"" : ""com.apple.HIToolbox"", ""size"" : 3358720, ""uuid"" : ""c68fe2e2-e0f3-3caf-ada3-bcc72fba79d0"", ""path"" : ""\/System\/Library\/Frameworks\/Carbon.framework\/Versions\/A\/Frameworks\/HIToolbox.framework\/Versions\/A\/HIToolbox"", ""name"" : ""HIToolbox"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 7006633984, ""CFBundleShortVersionString"" : ""1.22"", ""CFBundleIdentifier"" : ""com.apple.HIServices"", ""size"" : 409600, ""uuid"" : ""2bb62b67-c2cc-3584-841f-531216249cb3"", ""path"" : ""\/System\/Library\/Frameworks\/ApplicationServices.framework\/Versions\/A\/Frameworks\/HIServices.framework\/Versions\/A\/HIServices"", ""name"" : ""HIServices"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 6994747392, ""CFBundleShortVersionString"" : ""1.600.0"", ""CFBundleIdentifier"" : ""com.apple.SkyLight"", ""size"" : 4292608, ""uuid"" : ""4f4ac9ca-134a-3290-bd36-22bd7bd03f7f"", ""path"" : ""\/System\/Library\/PrivateFrameworks\/SkyLight.framework\/Versions\/A\/SkyLight"", ""name"" : ""SkyLight"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 6912368640, ""size"" : 294912, ""uuid"" : ""4d52c3a5-32e6-37a2-9d6c-23c612038354"", ""path"" : ""\/usr\/lib\/system\/libdispatch.dylib"", ""name"" : ""libdispatch.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4350951424, ""CFBundleShortVersionString"" : ""3.9.11, (c) 2001-2021 Python Software Foundation."", ""CFBundleIdentifier"" : ""org.python.python"", ""size"" : 2555904, ""uuid"" : ""5ee765c2-b52f-3980-9781-73db1abd2bde"", ""path"" : ""\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/Python"", ""name"" : ""Python"", ""CFBundleVersion"" : ""3.9.11"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4342792192, ""CFBundleShortVersionString"" : ""1.6.0"", ""CFBundleIdentifier"" : ""edu.ucsf.cgl.ChimeraX"", ""size"" : 16384, ""uuid"" : ""a5992708-d5b4-36ec-ac0a-e525f6105b56"", ""path"" : ""\/Applications\/ChimeraX_Daily.app\/Contents\/MacOS\/ChimeraX"", ""name"" : ""ChimeraX"", ""CFBundleVersion"" : ""1.6.0.0"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 6910648320, ""size"" : 568228, ""uuid"" : ""191e84f1-4b95-39c8-b253-1c1ef56c0fa8"", ""path"" : ""\/usr\/lib\/dyld"", ""name"" : ""dyld"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 4458987520, ""size"" : 20709376, ""uuid"" : ""6b8373ed-7142-34ea-9b4b-9f502e8a6f33"", ""path"" : ""\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib"", ""name"" : ""libopenblas64_.0.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 6129827840, ""size"" : 154959872, ""uuid"" : ""1b766dc4-2490-3425-8726-45387675bc14"", ""path"" : ""\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineCore.framework\/Versions\/A\/QtWebEngineCore"", ""name"" : ""QtWebEngineCore"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 7067893760, ""CFBundleShortVersionString"" : ""334.0.1"", ""CFBundleIdentifier"" : ""com.apple.IOSurface"", ""size"" : 90112, ""uuid"" : ""b027be5d-20a9-3c38-9e24-63dbe4b55296"", ""path"" : ""\/System\/Library\/Frameworks\/IOSurface.framework\/Versions\/A\/IOSurface"", ""name"" : ""IOSurface"", ""CFBundleVersion"" : ""334.0.1"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 6966341632, ""CFBundleShortVersionString"" : ""2.0.2"", ""CFBundleIdentifier"" : ""com.apple.framework.IOKit"", ""size"" : 901120, ""uuid"" : ""a5367643-e422-3594-8c2c-d0f2bb5cbf96"", ""path"" : ""\/System\/Library\/Frameworks\/IOKit.framework\/Versions\/A\/IOKit"", ""name"" : ""IOKit"" }, { ""size"" : 0, ""source"" : ""A"", ""base"" : 0, ""uuid"" : ""00000000-0000-0000-0000-000000000000"" } ], ""vmSummary"" : ""ReadOnly portion of Libraries: Total=1.6G resident=0K(0%) swapped_out_or_unallocated=1.6G(100%)\nWritable regions: Total=2.9G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.9G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 256K 2 \nActivity Tracing 256K 1 \nCG backing stores 9088K 8 \nCG image 2176K 37 \nColorSync 592K 29 \nCoreAnimation 2576K 68 \nCoreGraphics 32K 2 \nCoreServices 624K 2 \nCoreUI image data 5424K 40 \nFoundation 48K 2 \nKernel Alloc Once 32K 1 \nMALLOC 1.4G 264 \nMALLOC guard page 192K 11 \nMALLOC_MEDIUM (reserved) 632.0M 8 reserved VM address space (unallocated)\nMALLOC_NANO (reserved) 256.0M 1 reserved VM address space (unallocated)\nMach message 64K 3 \nOpenGL GLSL 384K 4 \nSTACK GUARD 512K 32 \nStack 152.2M 33 \nStack Guard 56.0M 1 \nVM_ALLOCATE 275.3M 465 \nVM_ALLOCATE (reserved) 160.0M 1 reserved VM address space (unallocated)\n__AUTH 1938K 361 \n__AUTH_CONST 24.9M 590 \n__CTF 756 1 \n__DATA 21.0M 758 \n__DATA_CONST 38.5M 765 \n__DATA_DIRTY 1984K 229 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__LINKEDIT 803.2M 174 \n__OBJC_CONST 4758K 325 \n__OBJC_RO 65.5M 1 \n__OBJC_RW 1988K 1 \n__TEXT 842.2M 786 \ndyld private memory 304K 3 \nmapped file 301.2M 63 \nshared memory 3248K 29 \n=========== ======= ======= \nTOTAL 5.0G 5103 \nTOTAL, minus reserved VM space 4.0G 5103 \n"", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""6112d17137f5d11121dcd4e2"", ""factorPackIds"" : { }, ""deploymentId"" : 240000276 }, { ""rolloutId"" : ""63582c5f8a53461413999550"", ""factorPackIds"" : { }, ""deploymentId"" : 240000002 } ], ""experiments"" : [ { ""treatmentId"" : ""c28e4ee6-1b08-4f90-8e05-2809e78310a3"", ""experimentId"" : ""6317d2003d24842ff850182a"", ""deploymentId"" : 400000012 }, { ""treatmentId"" : ""6dd670af-0633-45e4-ae5f-122ae4df02be"", ""experimentId"" : ""64406ba83deb637ac8a04419"", ""deploymentId"" : 900000005 } ] }, ""reportNotes"" : [ ""dyld_process_snapshot_create_for_process failed with 5"" ] } ===== Log before crash start ===== UCSF ChimeraX version: 1.6.dev202303282212 (2023-03-28) © 2016-2023 Regents of the University of California. All rights reserved. > open ""/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My > Drive/OpuA/Papers/SBD > interactions/Figures/Maps/SBD_interaction_Relion&CSparc.cxs"" Opened 1D1_APO_Refine3D_job032_run_class001_handness_LP15.mrc as #1.1, grid size 128,128,128, pixel 2.02, shown at level 0.00514, step 1, values float32 Opened 1E3D1_APO_50mMKCl_Class3D_job048_run_class002_LP15.mrc as #1.2, grid size 128,128,128, pixel 2.04, shown at level 0.00677, step 1, values float32 Opened 1E3D1_APO_100mMKCl_Refine3D_job026_run_class001_LP15.mrc as #1.4, grid size 128,128,128, pixel 2.04, shown at level 0.00791, step 1, values float32 Opened OpuA_wt_MSP1E3D1_50mM_KCl_CS_P52_J595_LP15.mrc as #3, grid size 256,256,256, pixel 1.02, shown at level 0.0602, step 1, values float32 Opened OpuA_MSP1E3D1_100mM_KCl_CS_J533_LP15.mrc as #2, grid size 256,256,256, pixel 1.02, shown at level 0.0656, step 1, values float32 Log from Wed May 31 15:06:29 2023UCSF ChimeraX version: 1.6.dev202303282212 (2023-03-28) © 2016-2023 Regents of the University of California. All rights reserved. > open ""/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My > Drive/OpuA/Papers/SBD interactions/Figures/Maps/SBD_interaction.cxs"" format > session Opened 1D1_APO_Refine3D_job032_run_class001_handness_LP15.mrc as #1.1, grid size 128,128,128, pixel 2.02, shown at level 0.00688, step 1, values float32 Opened 1E3D1_APO_50mMKCl_Class3D_job048_run_class002_LP15.mrc as #1.2, grid size 128,128,128, pixel 2.04, shown at level 0.00729, step 1, values float32 Opened 1E3D1_APO_50mMKCl_CSparc_J463_handness_LP15.mrc as #1.3, grid size 256,256,256, pixel 0.836, shown at level 0.065, step 1, values float32 Opened 1E3D1_APO_100mMKCl_Refine3D_job026_run_class001_LP15.mrc as #1.4, grid size 128,128,128, pixel 2.04, shown at level 0.00765, step 1, values float32 Log from Wed May 24 16:13:30 2023UCSF ChimeraX version: 1.6.dev202303282212 (2023-03-28) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My > Drive/OpuA/Papers/SBD > interactions/Figures/Maps/1D1_APO_Refine3D_job032_run_class001_handness_LP15.mrc"" > ""/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My > Drive/OpuA/Papers/SBD > interactions/Figures/Maps/1E3D1_APO_50mMKCl_Class3D_job048_run_class002_LP15.mrc"" > ""/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My > Drive/OpuA/Papers/SBD > interactions/Figures/Maps/1E3D1_APO_50mMKCl_CSparc_J463_handness_LP15.mrc"" > ""/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My > Drive/OpuA/Papers/SBD > interactions/Figures/Maps/1E3D1_APO_100mMKCl_Refine3D_job026_run_class001_LP15.mrc"" Opened 1D1_APO_Refine3D_job032_run_class001_handness_LP15.mrc as #1.1, grid size 128,128,128, pixel 2.02, shown at level 0.0417, step 1, values float32 Opened 1E3D1_APO_50mMKCl_Class3D_job048_run_class002_LP15.mrc as #1.2, grid size 128,128,128, pixel 2.04, shown at level 0.0396, step 1, values float32 Opened 1E3D1_APO_50mMKCl_CSparc_J463_handness_LP15.mrc as #1.3, grid size 256,256,256, pixel 0.836, shown at level 0.506, step 1, values float32 Opened 1E3D1_APO_100mMKCl_Refine3D_job026_run_class001_LP15.mrc as #1.4, grid size 128,128,128, pixel 2.04, shown at level 0.0411, step 1, values float32 > color #1.1 #bf8e8fff models > color #1.2 #8a8abfff models > color #1.2 #8e8cbfff models > color #1.3 #7c93bfff models > color #1.4 #64bfbeff models Fit in map shortcut requires 1 displayed atomic model and 1 map or two maps, got 0 atomic models, 4 maps. > select add #1.1 2 models selected > select add #1.2 4 models selected > select add #1.3 6 models selected > select add #1.4 8 models selected Fit in map shortcut requires 1 displayed atomic model and 1 map or two maps, got 0 atomic models, 4 maps. > select subtract #1.4 6 models selected > select subtract #1.3 4 models selected > fitmap #1.1 inMap #1.2 Fit map 1D1_APO_Refine3D_job032_run_class001_handness_LP15.mrc in map 1E3D1_APO_50mMKCl_Class3D_job048_run_class002_LP15.mrc using 20964 points correlation = 0.8488, correlation about mean = 0.133, overlap = 31.78 steps = 188, shift = 9.06, angle = 54.8 degrees Position of 1D1_APO_Refine3D_job032_run_class001_handness_LP15.mrc (#1.1) relative to 1E3D1_APO_50mMKCl_Class3D_job048_run_class002_LP15.mrc (#1.2) coordinates: Matrix rotation and translation 0.68647085 -0.45491054 -0.56728668 167.02576868 0.11461749 0.83808332 -0.53336590 82.34034332 0.71806727 0.30111917 0.62746047 -84.05259572 Axis 0.51042305 -0.78620254 0.34835882 Axis point 209.55789698 0.00000000 186.49480491 Rotation angle (degrees) 54.82979428 Shift along axis -8.76284825 > hide #!1.2 models > show #!1.2 models > hide #!1.3 models > hide #!1.4 models > hide #!1.2 models > show #!1.2 models > select subtract #1.2 2 models selected > select add #1.2 4 models selected > select subtract #1.1 2 models selected > ui mousemode right ""rotate selected models"" > view matrix models > #1.2,0.10818,0.83417,-0.54079,61.492,0.97055,-0.20639,-0.1242,65.659,-0.21522,-0.51143,-0.83194,331.33 > view matrix models > #1.2,-0.75062,0.6382,-0.17111,138.7,0.62121,0.5934,-0.51184,49.298,-0.22512,-0.49049,-0.84187,330.96 > view matrix models > #1.2,-0.83842,0.535,-0.10406,153.92,0.48644,0.64842,-0.5856,67.06,-0.24582,-0.54159,-0.8039,335.25 > view matrix models > #1.2,-0.8618,0.47744,-0.17131,173.06,0.4873,0.68552,-0.54093,56.192,-0.14082,-0.54965,-0.82344,326.77 > view matrix models > #1.2,-0.62937,0.72253,-0.28608,128.38,0.76395,0.50782,-0.39812,29.511,-0.14238,-0.46912,-0.87158,322.42 > ui mousemode right ""translate selected models"" > view matrix models > #1.2,-0.62937,0.72253,-0.28608,147.95,0.76395,0.50782,-0.39812,26.848,-0.14238,-0.46912,-0.87158,323.58 > ui mousemode right ""rotate selected models"" > view matrix models > #1.2,-0.60162,0.77864,-0.17826,123.23,0.7915,0.55104,-0.26437,0.50613,-0.10762,-0.30014,-0.94781,306.87 > fitmap #1.2 inMap #1.1 Fit map 1E3D1_APO_50mMKCl_Class3D_job048_run_class002_LP15.mrc in map 1D1_APO_Refine3D_job032_run_class001_handness_LP15.mrc using 20966 points correlation = 0.9904, correlation about mean = 0.6218, overlap = 49.22 steps = 72, shift = 3.17, angle = 4.68 degrees Position of 1E3D1_APO_50mMKCl_Class3D_job048_run_class002_LP15.mrc (#1.2) relative to 1D1_APO_Refine3D_job032_run_class001_handness_LP15.mrc (#1.1) coordinates: Matrix rotation and translation -0.39120368 0.34261777 -0.85415031 245.40230828 0.89985596 -0.05215568 -0.43305777 77.72830665 -0.19292207 -0.93802604 -0.28790315 313.23548684 Axis -0.50428036 -0.66032745 0.55647908 Axis point 29.28151475 0.00000000 239.15944670 Rotation angle (degrees) 149.95486426 Shift along axis -0.76870384 > hide #!1.2 models > select subtract #1.2 Nothing selected > show #!1.3 models > select add #1.3 2 models selected > view matrix models > #1.3,-0.081367,0.54691,-0.83323,138.1,0.33087,0.80341,0.49503,-62.44,0.94016,-0.23541,-0.24633,45.613 > view matrix models > #1.3,-0.21066,0.58342,-0.78438,143.29,0.37182,0.7899,0.48766,-64.66,0.90409,-0.18891,-0.38333,57.801 > view matrix models > #1.3,0.034592,-0.88144,-0.47102,243.37,-0.27353,-0.46166,0.84383,103.74,-0.96124,0.099647,-0.25707,214.27 > ui mousemode right ""translate selected models"" > view matrix models > #1.3,0.034592,-0.88144,-0.47102,275.28,-0.27353,-0.46166,0.84383,124.94,-0.96124,0.099647,-0.25707,229.11 > view matrix models > #1.3,0.034592,-0.88144,-0.47102,268.55,-0.27353,-0.46166,0.84383,124.07,-0.96124,0.099647,-0.25707,248.02 > fitmap #1.3 inMap #1.1 Fit map 1E3D1_APO_50mMKCl_CSparc_J463_handness_LP15.mrc in map 1D1_APO_Refine3D_job032_run_class001_handness_LP15.mrc using 167596 points correlation = 0.9922, correlation about mean = 0.5143, overlap = 4942 steps = 92, shift = 4.01, angle = 17.1 degrees Position of 1E3D1_APO_50mMKCl_CSparc_J463_handness_LP15.mrc (#1.3) relative to 1D1_APO_Refine3D_job032_run_class001_handness_LP15.mrc (#1.1) coordinates: Matrix rotation and translation -0.47649716 -0.71731006 -0.50834705 310.89473368 -0.58716553 -0.17071088 0.79126129 125.70153597 -0.65436006 0.67551763 -0.33983650 162.90371378 Axis -0.50926669 0.64245040 0.57262983 Axis point 212.09671900 0.00000000 11.28407839 Rotation angle (degrees) 173.47495138 Shift along axis 15.71219595 > hide #!1.3 models > select subtract #1.3 Nothing selected > show #!1.4 models > select add #1.4 2 models selected > ui mousemode right ""rotate selected models"" > view matrix models > #1.4,0.082819,-0.92686,-0.36616,272.5,0.75868,-0.1796,0.62621,-8.7365,-0.64617,-0.32966,0.68832,155.99 > fitmap #1.4 inMap #1.1 Fit map 1E3D1_APO_100mMKCl_Refine3D_job026_run_class001_LP15.mrc in map 1D1_APO_Refine3D_job032_run_class001_handness_LP15.mrc using 20970 points correlation = 0.9868, correlation about mean = 0.5591, overlap = 49.19 steps = 88, shift = 9.57, angle = 13 degrees Position of 1E3D1_APO_100mMKCl_Refine3D_job026_run_class001_LP15.mrc (#1.4) relative to 1D1_APO_Refine3D_job032_run_class001_handness_LP15.mrc (#1.1) coordinates: Matrix rotation and translation -0.31321425 -0.81995246 0.47913965 209.88834607 0.56549393 0.24430235 0.78773916 -71.69439792 -0.76296360 0.51768169 0.38715916 108.92541154 Axis -0.14363107 0.66061722 0.73685480 Axis point 150.53405797 15.36713150 0.00000000 Rotation angle (degrees) 109.93027636 Shift along axis 2.75317107 > select subtract #1.4 Nothing selected > show #!1.2 models > show #!1.3 models > volume #1.2 level 0.007295 > volume #1.1 level 0.00955 > volume #1.3 level 0.07745 > volume #1.4 level 0.01023 > volume #1.4 level 0.00894 > hide #!1.2 models > volume #1.4 level 0.007653 > surface dust #1.1 size 20.2 > surface dust #1.4 size 20.4 > volume #1.1 level 0.006883 > show #!1.2 models > select add #1.2 2 models selected > view matrix models > #1.2,-0.22052,-0.94065,0.25797,246.08,0.65074,0.055132,0.7573,-56.788,-0.72657,0.33487,0.59996,85.96 > view matrix models > #1.2,-0.23384,-0.92492,0.29972,239.94,0.73649,0.032746,0.67566,-53.638,-0.63475,0.37874,0.67354,58.044 > ui mousemode right ""translate selected models"" > view matrix models > #1.2,-0.23384,-0.92492,0.29972,239.56,0.73649,0.032746,0.67566,-47.569,-0.63475,0.37874,0.67354,67.636 Fit in map shortcut requires 1 displayed atomic model and 1 map or two maps, got 0 atomic models, 3 maps. [Repeated 1 time(s)] > hide #!1.4 models > fitmap #1.2 inMap #1.1 Fit map 1E3D1_APO_50mMKCl_Class3D_job048_run_class002_LP15.mrc in map 1D1_APO_Refine3D_job032_run_class001_handness_LP15.mrc using 60043 points correlation = 0.9804, correlation about mean = 0.9132, overlap = 73.71 steps = 124, shift = 6.92, angle = 21.5 degrees Position of 1E3D1_APO_50mMKCl_Class3D_job048_run_class002_LP15.mrc (#1.2) relative to 1D1_APO_Refine3D_job032_run_class001_handness_LP15.mrc (#1.1) coordinates: Matrix rotation and translation -0.58988287 -0.45648126 0.66608037 176.86012929 0.64827307 0.22408810 0.72768575 -77.52055657 -0.48143559 0.86105133 0.16373878 56.62252122 Axis 0.08343400 0.71789027 0.69113843 Axis point 113.04471394 0.00000000 4.08477590 Rotation angle (degrees) 126.94355821 Shift along axis -1.76110418 > select subtract #1.2 Nothing selected > show #!1.3 models > show #!1.4 models > volume #1.3 level 0.05761 > volume #1.3 level 0.06505 > surface dust #1.1 size 20.2 > surface dust #1.2 size 20.4 > surface dust #1.4 size 20.4 > save ""/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My > Drive/OpuA/Papers/SBD interactions/Figures/Maps/SBD_interaction.cxs"" > color #1.2 #7cbce7ff models > color #1.2 #59a9d4ff models > color #1.4 #b2d7eeff models > color #1.4 #8cb4caff models > color #1.4 #8bb3c8ff models > color #1.4 #8db5cbff models > set bgColor white > graphics silhouettes true > graphics silhouettes true width 1 > save ""/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My > Drive/OpuA/Papers/SBD interactions/Figures/Maps/SBD_interaction.cxs"" > save ""/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My > Drive/OpuA/Papers/SBD interactions/Figures/Maps/sbd_interaction_top.png"" > width 1090 height 1067 supersample 3 > turn x 10 > turn x -10 > turn x -90 > turn x -10 > turn x 10 > turn y 180 [Repeated 1 time(s)] > save ""/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My > Drive/OpuA/Papers/SBD interactions/Figures/Maps/sbd_interaction_side.png"" > width 1090 height 1067 supersample 3 > turn x -90 [Repeated 2 time(s)] > hide #!1.2 models > hide #!1.4 models > save ""/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My > Drive/OpuA/Papers/SBD > interactions/Figures/Maps/sbd_interaction_top_1d1_apo.png"" width 1090 height > 1067 supersample 3 > hide #!1.1 models > show #!1.2 models > save ""/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My > Drive/OpuA/Papers/SBD > interactions/Figures/Maps/sbd_interaction_top_1E3D1_50mM_apo.png"" width 1090 > height 1067 supersample 3 > show #!1.4 models > hide #!1.2 models > save ""/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My > Drive/OpuA/Papers/SBD > interactions/Figures/Maps/sbd_interaction_top_1E3D1_100mM_apo.png"" width > 1090 height 1067 supersample 3 > show #!1.1 models > hide #!1 models > hide #!1.1 models > show #!1.1 models > hide #!1.4 models > color #1.1 E1A794 Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero', 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', 'fromcartoons', 'fromribbons', or 'random' or a keyword > color #1.1 #62cc8eff models > color #1.1 E1A794 models Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero', 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', 'fromcartoons', 'fromribbons', or 'random' or a keyword > color #1.1 #E1A794 models > show #!1.2 models > show #!1.3 models > hide #!1.3 models > show #!1.4 models > save ""/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My > Drive/OpuA/Papers/SBD interactions/Figures/sbd_interaction_top.png"" width > 1090 height 1067 supersample 3 > save ""/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My > Drive/OpuA/Papers/SBD interactions/Figures/Maps/SBD_interaction.cxs"" ——— End of log from Wed May 24 16:13:30 2023 ——— opened ChimeraX session > open /Users/panos/Downloads/cryosparc_P52_J595_003_volume_map.mrc > /Users/panos/Downloads/cryosparc_P52_J596_003_volume_map.mrc Opened cryosparc_P52_J595_003_volume_map.mrc as #2.1, grid size 256,256,256, pixel 1.02, shown at level 0.328, step 1, values float32 Opened cryosparc_P52_J596_003_volume_map.mrc as #2.2, grid size 256,256,256, pixel 1.02, shown at level 0.275, step 1, values float32 > hide #!1.1 models > hide #!1.2 models > hide #!2.2 models > select add #2.1 2 models selected > ui mousemode right ""rotate selected models"" > view matrix models > #2.1,0.0052656,0.99957,0.028847,11.446,-0.88357,-0.0088577,0.46821,192.88,0.46826,-0.027954,0.88315,-48.023 > view matrix models > #2.1,0.46984,0.87214,-0.13645,-17.144,-0.78165,0.48286,0.39481,125.6,0.41022,-0.078841,0.90857,-36.608 > ui mousemode right ""translate selected models"" > view matrix models > #2.1,0.46984,0.87214,-0.13645,-32.754,-0.78165,0.48286,0.39481,134.75,0.41022,-0.078841,0.90857,-34.717 > fitmap #2.1 inMap #1.4 Fit map cryosparc_P52_J595_003_volume_map.mrc in map 1E3D1_APO_100mMKCl_Refine3D_job026_run_class001_LP15.mrc using 167715 points correlation = 0.989, correlation about mean = 0.5809, overlap = 3419 steps = 88, shift = 10.8, angle = 12.9 degrees Position of cryosparc_P52_J595_003_volume_map.mrc (#2.1) relative to 1E3D1_APO_100mMKCl_Refine3D_job026_run_class001_LP15.mrc (#1.4) coordinates: Matrix rotation and translation -0.92961977 0.25968284 -0.26148020 246.04814088 -0.27734938 -0.96022211 0.03241644 284.17983705 -0.24266108 0.10265633 0.96466433 19.39400389 Axis 0.12960992 -0.03472592 -0.99095680 Axis point 144.09594256 124.63498993 0.00000000 Rotation angle (degrees) 164.27821183 Shift along axis 2.80325198 > volume #1.4 level 0.007912 > volume #2.1 level 0.1142 > volume #2.1 level 0.07622 > show #!2.2 models > select subtract #2.1 Nothing selected > select add #2 5 models selected > select subtract #2 Nothing selected > select add #2.2 2 models selected > ui mousemode right ""rotate selected models"" > view matrix models > #2.2,0.53075,0.70697,0.46743,-97.043,0.83443,-0.53248,-0.14212,121.69,0.14842,0.46546,-0.87253,158.03 > view matrix models > #2.2,0.6639,0.51948,0.53793,-97.805,0.67931,-0.71971,-0.14336,169.27,0.31268,0.4606,-0.83071,131.03 > fitmap #2.2 inMap #2.1 Fit map cryosparc_P52_J596_003_volume_map.mrc in map cryosparc_P52_J595_003_volume_map.mrc using 167703 points correlation = 0.8966, correlation about mean = 0.0221, overlap = 2.209e+04 steps = 184, shift = 10.9, angle = 28 degrees Position of cryosparc_P52_J596_003_volume_map.mrc (#2.2) relative to cryosparc_P52_J595_003_volume_map.mrc (#2.1) coordinates: Matrix rotation and translation -0.24330368 0.95969982 -0.14063986 57.35698333 0.96446432 0.22397145 -0.14016194 -2.40697019 -0.10301407 -0.16974404 -0.98008931 296.17081794 Axis -0.61502703 -0.78225930 0.09905629 Axis point 27.34494106 -0.00000000 148.35474276 Rotation angle (degrees) 178.62193622 Shift along axis -4.05563718 > volume #2.2 level 0.02439 > volume #2.2 level 0.23 > view matrix models > #2.2,-0.78903,0.52752,-0.31488,210.36,-0.59732,-0.7786,0.19236,299.16,-0.14369,0.33986,0.92943,-14.439 > ui mousemode right ""translate selected models"" > view matrix models > #2.2,-0.78903,0.52752,-0.31488,199.71,-0.59732,-0.7786,0.19236,290.44,-0.14369,0.33986,0.92943,-17.478 > fitmap #2.2 inMap #2.1 Fit map cryosparc_P52_J596_003_volume_map.mrc in map cryosparc_P52_J595_003_volume_map.mrc using 212042 points correlation = 0.9137, correlation about mean = 0.3495, overlap = 2.591e+04 steps = 164, shift = 3.62, angle = 20.1 degrees Position of cryosparc_P52_J596_003_volume_map.mrc (#2.2) relative to cryosparc_P52_J595_003_volume_map.mrc (#2.1) coordinates: Matrix rotation and translation -0.09480475 0.99363161 -0.06089567 21.92391062 -0.98915450 -0.08713090 0.11824368 260.01646925 0.11218477 0.07144529 0.99111561 -23.81168159 Axis -0.02350643 -0.08693682 -0.99593646 Axis point 129.89168863 121.03897454 0.00000000 Rotation angle (degrees) 95.47491960 Shift along axis 0.59456482 > volume #2.1 level 0.233 > volume #2.2 level 0.2567 > volume #2.2 level 0.1103 > volume #2.2 level 0.1638 > volume #2.2 level 0.0258 > volume #2.1 level 0.07266 > select add #2.1 4 models selected > select subtract #2.1 2 models selected > ui mousemode right ""rotate selected models"" > view matrix models > #2.2,0.5058,0.86052,-0.060656,-51.241,0.85769,-0.49411,0.14223,63.9,0.092424,-0.12397,-0.98797,249.54 > ui mousemode right ""translate selected models"" > view matrix models > #2.2,0.5058,0.86052,-0.060656,-54.164,0.85769,-0.49411,0.14223,64.857,0.092424,-0.12397,-0.98797,269.31 > fitmap #2.2 inMap #2.1 Fit map cryosparc_P52_J596_003_volume_map.mrc in map cryosparc_P52_J595_003_volume_map.mrc using 558655 points correlation = 0.8027, correlation about mean = 0.5234, overlap = 3.041e+04 steps = 284, shift = 9.18, angle = 28.6 degrees Position of cryosparc_P52_J596_003_volume_map.mrc (#2.2) relative to cryosparc_P52_J595_003_volume_map.mrc (#2.1) coordinates: Matrix rotation and translation -0.31883830 0.94102391 -0.11320837 66.54660362 0.94700391 0.31136446 -0.07896687 -25.13485746 -0.03906065 -0.13238643 -0.99042824 283.34701198 Axis -0.58329652 -0.80963049 0.06529652 Axis point 38.31902308 0.00000000 141.60166494 Rotation angle (degrees) 177.37544633 Shift along axis 0.03511925 > hide #!2.2 models > show #!1.3 models > hide #!1.3 models > show #!1.2 models > hide #!2.1 models > show #!2.1 models > volume #2.1 level 0.09048 > open ""/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My > Drive/OpuA/Papers/SBD > interactions/Figures/Maps/OpuA_wt_MSP1E3D1_50mM_KCl_CS_P52_J595_LP15.mrc"" Opened OpuA_wt_MSP1E3D1_50mM_KCl_CS_P52_J595_LP15.mrc as #3, grid size 256,256,256, pixel 1.02, shown at level 0.33, step 1, values float32 > hide #!2 models > select add #2 5 models selected > select subtract #2 Nothing selected > select subtract #2.2 Nothing selected > hide #!1.2 models > hide #!1 models > hide #!2.1 models > show #!2.1 models > select add #3 2 models selected > ui mousemode right ""rotate selected models"" > view matrix models > #3,0.30238,0.94117,-0.15089,-0.71087,-0.93194,0.32515,0.16054,196.93,0.20016,0.092077,0.97543,-36.882 > fitmap #3 inMap #2.1 Fit map OpuA_wt_MSP1E3D1_50mM_KCl_CS_P52_J595_LP15.mrc in map cryosparc_P52_J595_003_volume_map.mrc using 167676 points correlation = 0.9901, correlation about mean = 0.7037, overlap = 2.819e+04 steps = 148, shift = 19.2, angle = 10.7 degrees Position of OpuA_wt_MSP1E3D1_50mM_KCl_CS_P52_J595_LP15.mrc (#3) relative to cryosparc_P52_J595_003_volume_map.mrc (#2.1) coordinates: Matrix rotation and translation 0.99999635 0.00194963 0.00186974 -0.52853933 -0.00194061 0.99998653 -0.00481380 1.02419600 -0.00187910 0.00481016 0.99998667 -0.37248314 Axis 0.87199756 0.33967159 -0.35248187 Axis point 0.00000000 76.68149382 211.25652730 Rotation angle (degrees) 0.31617934 Shift along axis 0.01829883 > select subtract #3 Nothing selected > volume #3 level 0.04646 > hide #!2.1 models > close #2 > show #!1.1 models > show #!1.4 models > open ""/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My > Drive/OpuA/Papers/SBD > interactions/Figures/Maps/OpuA_MSP1E3D1_100mM_KCl_CS_J533_LP15.mrc"" Opened OpuA_MSP1E3D1_100mM_KCl_CS_J533_LP15.mrc as #2, grid size 256,256,256, pixel 1.02, shown at level 0.329, step 1, values float32 > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!1.4 models > volume #2 level 0.05655 > volume #2 level 0.1019 > volume #3 level 0.1014 > volume #2 level 0.1087 > volume #3 level 0.07278 > volume #2 level 0.08377 > hide #!1.1 models > show #!1.1 models > volume #1.1 level 0.00742 > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > show #!1.1 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > select add #2 2 models selected > hide #!1.1 models > hide #!1 models > fitmap #2 inMap #3 Fit map OpuA_MSP1E3D1_100mM_KCl_CS_J533_LP15.mrc in map OpuA_wt_MSP1E3D1_50mM_KCl_CS_P52_J595_LP15.mrc using 472776 points correlation = 0.9442, correlation about mean = 0.7612, overlap = 3.822e+04 steps = 192, shift = 11, angle = 23.3 degrees Position of OpuA_MSP1E3D1_100mM_KCl_CS_J533_LP15.mrc (#2) relative to OpuA_wt_MSP1E3D1_50mM_KCl_CS_P52_J595_LP15.mrc (#3) coordinates: Matrix rotation and translation 0.51970786 -0.85398888 -0.02463217 177.72476668 0.84697898 0.51123578 0.14582379 -67.15044938 -0.11193905 -0.09664870 0.98900388 28.36434461 Axis -0.14094125 0.05074860 0.98871641 Axis point 150.47590096 123.41410250 0.00000000 Rotation angle (degrees) 59.33791798 Shift along axis -0.41224873 > show #!1.1 models > view matrix models > #2,0.07653,-0.97681,0.19999,220.97,-0.99552,-0.086022,-0.039201,289.25,0.055495,-0.19609,-0.97901,272.14 > hide #!1.1 models > hide #!1 models > fitmap #2 inMap #3 Fit map OpuA_MSP1E3D1_100mM_KCl_CS_J533_LP15.mrc in map OpuA_wt_MSP1E3D1_50mM_KCl_CS_P52_J595_LP15.mrc using 472776 points correlation = 0.9921, correlation about mean = 0.9532, overlap = 4.086e+04 steps = 184, shift = 8.87, angle = 24.3 degrees Position of OpuA_MSP1E3D1_100mM_KCl_CS_J533_LP15.mrc (#2) relative to OpuA_wt_MSP1E3D1_50mM_KCl_CS_P52_J595_LP15.mrc (#3) coordinates: Matrix rotation and translation 0.78893542 -0.61400746 -0.02399460 110.74537649 -0.60964780 -0.77725371 -0.15558352 332.46704065 0.07687955 0.13737360 -0.98753128 232.07897471 Axis 0.94542407 -0.32553859 0.01406940 Axis point 0.00000000 175.73396986 128.91565740 Rotation angle (degrees) 171.08701761 Shift along axis -0.26429381 > show #!1.1 models > save ""/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My > Drive/OpuA/Papers/SBD > interactions/Figures/Maps/SBD_interaction_Relion&CSparc.cxs"" > show #!1.3 models > hide #!1.3 models > close #1.3 > select subtract #2 Nothing selected > color #2 #8db5cbff models > color #3 #59a9d4ff models > save ""/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My > Drive/OpuA/Papers/SBD > interactions/Figures/Maps/SBD_interaction_Relion&CSparc.cxs"" > open > /Users/panos/Documents/mounts/mntemstorage/emstorage2/panos/Datasets/OpuA/OpuA_1E3D1_low_salt_50mM/merged_bPD32s3-5_bPD33s1-2/Refine3D/job063/run_class001.mrc Opened run_class001.mrc as #4, grid size 128,128,128, pixel 2.04, shown at level 0.0389, step 1, values float32 > hide #!1.1 models > hide #!1 models > hide #!2 models > hide #!3 models > volume #4 level 0.006819 > open > /Users/panos/Documents/mounts/mntemstorage/emstorage2/panos/Datasets/OpuA/OpuA_1E3D1_low_salt_50mM/merged_bPD32s3-5_bPD33s1-2/Refine3D/job064/run_class001.mrc Opened run_class001.mrc as #5, grid size 128,128,128, pixel 2.04, shown at level 0.0388, step 1, values float32 > volume #5 level 0.006305 > hide #!4 models > hide #!5 models > show #!3 models > show #!2 models > close #4 > close #5 > volume #3 level 0.04646 > volume #2 level 0.04975 > show #!1.1 models > volume #3 level 0.0293 > volume #2 level 0.02933 > volume #1.1 level 0.005139 > open 3lg6 Summary of feedback from opening 3lg6 fetched from pdb --- note | Fetching compressed mmCIF 3lg6 from http://files.rcsb.org/download/3lg6.cif 3lg6 title: Crystal structure of putative glutathione transferase from Coccidioides immitis [more info...] Chain information for 3lg6 #4 --- Chain | Description A B C D | putative glutathione transferase Non-standard residues in 3lg6 #4 --- SO4 — sulfate ion 3lg6 mmCIF Assemblies --- 1| author_and_software_defined_assembly 2| author_and_software_defined_assembly > ui mousemode right zoom > select add #4 7444 atoms, 6996 bonds, 3 pseudobonds, 1487 residues, 2 models selected > ui mousemode right ""translate selected models"" > view matrix models #4,1,0,0,109.39,0,1,0,140.39,0,0,1,52.526 > ui mousemode right ""rotate selected models"" > view matrix models > #4,0.71077,-0.27307,0.64826,81.626,-0.19082,0.81217,0.55134,117.87,-0.67705,-0.51557,0.52516,55.244 > ui mousemode right ""translate selected models"" > view matrix models > #4,0.71077,-0.27307,0.64826,66.182,-0.19082,0.81217,0.55134,146.78,-0.67705,-0.51557,0.52516,60.276 > ui mousemode right ""rotate selected models"" > view matrix models > #4,0.29061,-0.84495,0.44901,62.484,0.11699,0.49711,0.85976,137.67,-0.94966,-0.19732,0.24332,68.979 > volume #1.2 level 0.006775 > volume #3 level 0.02816 > volume #2 level 0.02933 > open 3lg6 3lg6 title: Crystal structure of putative glutathione transferase from Coccidioides immitis [more info...] Chain information for 3lg6 #5 --- Chain | Description A B C D | putative glutathione transferase Non-standard residues in 3lg6 #5 --- SO4 — sulfate ion 3lg6 mmCIF Assemblies --- 1| author_and_software_defined_assembly 2| author_and_software_defined_assembly > select subtract #4 Nothing selected > select add #5 7444 atoms, 6996 bonds, 3 pseudobonds, 1487 residues, 2 models selected > ui mousemode right zoom > ui mousemode right ""translate selected models"" > view matrix models #5,1,0,0,100.72,0,1,0,255.9,0,0,1,109.83 > ui mousemode right zoom > ui mousemode right ""rotate selected models"" > view matrix models > #5,0.98582,-0.070259,-0.15237,105.02,0.058937,0.99524,-0.077598,259.21,0.1571,0.067517,0.98527,112.92 > ui mousemode right ""translate selected models"" > view matrix models > #5,0.98582,-0.070259,-0.15237,125.23,0.058937,0.99524,-0.077598,213.81,0.1571,0.067517,0.98527,128 > ui mousemode right ""rotate selected models"" > view matrix models > #5,-0.066399,0.17038,-0.98314,141.63,0.84421,0.53482,0.035668,216.08,0.53188,-0.82761,-0.17935,163.97 > view matrix models > #5,-0.23053,0.27222,-0.93421,138.78,-0.22497,-0.94897,-0.22101,198.05,-0.9467,0.15922,0.28001,138.24 > ui mousemode right ""translate selected models"" > view matrix models > #5,-0.23053,0.27222,-0.93421,133.99,-0.22497,-0.94897,-0.22101,202.59,-0.9467,0.15922,0.28001,126.71 > ui mousemode right ""rotate selected models"" > view matrix models > #5,-0.41001,0.013975,-0.91197,128.7,0.5099,-0.82553,-0.24189,213.78,-0.75624,-0.56419,0.33135,121.13 > view matrix models > #5,-0.7309,0.05276,-0.68044,117.18,0.33967,-0.83663,-0.42973,217.78,-0.59195,-0.54521,0.59357,114.63 > view matrix models > #5,-0.74076,-0.045412,-0.67024,115.86,0.46457,-0.75529,-0.46228,221.18,-0.48523,-0.65381,0.58059,115.49 > view matrix models > #5,-0.52082,-0.60453,-0.60274,111.55,0.85235,-0.40748,-0.32782,224.68,-0.047425,-0.68448,0.72749,115.92 > view matrix models > #5,-0.097299,0.8805,-0.46395,125.26,-0.86505,-0.30534,-0.39807,205.91,-0.49216,0.36261,0.79139,117.2 > view matrix models > #5,-0.15326,0.55921,-0.81474,133.48,-0.80294,-0.55106,-0.22719,198.85,-0.57602,0.61937,0.53347,126.98 > volume #3 level 0.07278 > volume #2 level 0.06562 > volume #3 level 0.06019 > save ""/Users/panos/Google Drive/My Drive/OpuA/Papers/SBD > interactions/Figures/Maps/SBD_interaction_Relion&CSparc.cxs"" ——— End of log from Wed May 31 15:06:29 2023 ——— opened ChimeraX session > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > open /Users/panos/Downloads/cryosparc_P52_J601_003_volume_map.mrc Opened cryosparc_P52_J601_003_volume_map.mrc as #6, grid size 256,256,256, pixel 1.02, shown at level 0.329, step 1, values float32 > select subtract #5 Nothing selected > hide #!2 models > hide #!3 models > hide #!4 models > hide #!5 models > hide #!1.1 models > hide #!1 models > volume #6 level 0.04193 > select add #6 2 models selected > show #!1.1 models > show #!3 models > hide #!3 models > show #!2 models > ui mousemode right ""rotate selected models"" > view matrix models > #6,0.99711,-0.076008,-0.00073251,9.8452,0.075266,0.98593,0.14928,-28.465,-0.010624,-0.1489,0.9888,21.267 > view matrix models > #6,-0.071047,0.87529,-0.47836,92.752,-0.88219,0.16867,0.43965,151.98,0.4655,0.45324,0.76018,-80.904 > ui mousemode right ""translate selected models"" > view matrix models > #6,-0.071047,0.87529,-0.47836,85.234,-0.88219,0.16867,0.43965,184.8,0.4655,0.45324,0.76018,-97.871 > ui mousemode right ""rotate selected models"" > view matrix models > #6,-0.15294,0.88053,-0.44863,90.712,-0.93908,0.011909,0.3435,224.66,0.30781,0.47383,0.82507,-89.679 > view matrix models > #6,-0.061719,0.97049,-0.23309,38.188,-0.96873,-0.0020204,0.24809,243.37,0.2403,0.24112,0.94028,-68.528 > hide #!1.1 models > fitmap #6 inMap #2 Fit map cryosparc_P52_J601_003_volume_map.mrc in map OpuA_MSP1E3D1_100mM_KCl_CS_J533_LP15.mrc using 558125 points correlation = 0.9686, correlation about mean = 0.8852, overlap = 4.208e+04 steps = 220, shift = 18.6, angle = 26 degrees Position of cryosparc_P52_J601_003_volume_map.mrc (#6) relative to OpuA_MSP1E3D1_100mM_KCl_CS_J533_LP15.mrc (#2) coordinates: Matrix rotation and translation 0.79099295 -0.60672505 0.07883439 96.35590788 -0.61135113 -0.77871963 0.14087412 293.41833949 -0.02408197 -0.15962593 -0.98688379 283.97975289 Axis -0.94595397 0.32397379 -0.01456259 Axis point 0.00000000 175.20604846 128.84954060 Rotation angle (degrees) 170.86075309 Shift along axis -0.22388173 > show #!1.1 models > volume #6 level 0.04193 > volume #2 level 0.06079 > volume #1.1 level 0.007615 > volume #2 level 0.05435 > volume #6 level 0.04934 > hide #!6 models > select subtract #6 Nothing selected > hide #!1.1 models > show #!1.1 models > show #!3 models > show #!6 models > hide #!6 models > show #!6 models > hide #!3 models > volume #6 level 0.08822 > volume #2 level 0.08333 > volume #1.1 level 0.00952 > volume #2 level 0.0946 > open ""/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My > Drive/OpuA/Papers/SBD > interactions/Figures/Maps/OpuA_MSP1E3D1_50mM_KCl_CS_P52_J601_LP15.mrc"" Opened OpuA_MSP1E3D1_50mM_KCl_CS_P52_J601_LP15.mrc as #7, grid size 256,256,256, pixel 1.02, shown at level 0.334, step 1, values float32 > select add #7 2 models selected > view matrix models > #7,0.16997,0.96154,-0.21574,24.139,-0.9809,0.14406,-0.13073,264.45,-0.094623,0.23384,0.96766,-11.959 > volume #7 level 0.1058 > volume #7 level 0.1041 > volume #7 level 0.09443 > volume #7 level 0.08472 > view matrix models > #7,0.17473,0.95935,-0.22163,24.614,-0.98026,0.14833,-0.13073,263.84,-0.092542,0.2401,0.96633,-12.82 > view matrix models > #7,0.5965,0.65257,-0.46727,42.798,-0.78581,0.59335,-0.17449,189.67,0.16339,0.47127,0.86673,-60.531 > hide #!2 models > hide #!1.1 models > hide #!1 models > select subtract #7 Nothing selected > fitmap #6 inMap #7 Fit map cryosparc_P52_J601_003_volume_map.mrc in map OpuA_MSP1E3D1_50mM_KCl_CS_P52_J601_LP15.mrc using 451834 points correlation = 0.9781, correlation about mean = 0.8813, overlap = 4.247e+04 steps = 232, shift = 23.4, angle = 29.6 degrees Position of cryosparc_P52_J601_003_volume_map.mrc (#6) relative to OpuA_MSP1E3D1_50mM_KCl_CS_P52_J601_LP15.mrc (#7) coordinates: Matrix rotation and translation 0.99999998 0.00019444 -0.00001787 -0.06241495 -0.00019444 0.99999991 0.00037911 0.00014539 0.00001794 -0.00037911 0.99999993 0.05105057 Axis -0.88901279 -0.04198037 -0.45595385 Axis point 0.00000000 173.39168639 -3.90810666 Rotation angle (degrees) 0.02443339 Shift along axis 0.03220488 > show #!5 models > hide #!5 models > show #!2 models > hide #!2 models > undo > close #6 > fitmap #7 inMap #1.1 Fit map OpuA_MSP1E3D1_50mM_KCl_CS_P52_J601_LP15.mrc in map 1D1_APO_Refine3D_job032_run_class001_handness_LP15.mrc using 473584 points correlation = 0.9681, correlation about mean = 0.8617, overlap = 4873 steps = 136, shift = 22.9, angle = 29.8 degrees Position of OpuA_MSP1E3D1_50mM_KCl_CS_P52_J601_LP15.mrc (#7) relative to 1D1_APO_Refine3D_job032_run_class001_handness_LP15.mrc (#1.1) coordinates: Matrix rotation and translation 0.39113611 0.76497938 0.51168261 -89.03899842 -0.78484570 -0.01311501 0.61955244 153.05376525 0.48065556 -0.64392122 0.59526103 71.84373590 Axis -0.63179321 0.01551491 -0.77498170 Axis point 23.60278076 132.74251589 0.00000000 Rotation angle (degrees) 90.76543364 Shift along axis 2.95126863 > show #!2 models > volume #7 level 0.1074 > volume #1.1 level 0.01333 > volume #2 level 0.1091 > hide #!7 models > volume #2 level 0.09943 > show #!1.4 models > hide #!2 models > show #!7 models > volume #7 level 0.09766 > hide #!7 models > hide #!1.4 models > volume #1.1 level 0.01123 > volume #1.1 level 0.007425 > show #!2 models > volume #2 level 0.00742 > volume #2 level 0.07021 > volume #7 level 0.07986 > color #7 #59a9d4ff models > volume #7 level 0.08957 > volume #2 level 0.07665 > volume #1.1 level 0.008758 > save ""/Users/panos/Library/CloudStorage/GoogleDrive-p.drougkas@rug.nl/My > Drive/OpuA/Papers/SBD > interactions/Figures/Maps/SBD_interaction_Relion&CSparc.cxs"" Unsupported scale factor (0.000000) detected on Display0 QPainter::begin: Paint device returned engine == 0, type: 3 ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.6.dev202303282212 (2023-03-28) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 83 OpenGL renderer: Apple M1 OpenGL vendor: Apple Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.4.2, Qt 6.4.2 Qt runtime version: 6.4.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro17,1 Model Number: Z11B000V6N/A Chip: Apple M1 Total Number of Cores: 8 (4 performance and 4 efficiency) Memory: 16 GB System Firmware Version: 8419.80.7 OS Loader Version: 8419.80.7 Software: System Software Overview: System Version: macOS 13.2.1 (22D68) Kernel Version: Darwin 22.3.0 Time since boot: 23 hours, 35 minutes Graphics/Displays: Apple M1: Chipset Model: Apple M1 Type: GPU Bus: Built-In Total Number of Cores: 8 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal PHL BDM3270: Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition) UI Looks like: 2560 x 1440 @ 60.00Hz Mirror: Off Online: Yes Rotation: Supported Installed Packages: alabaster: 0.7.13 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.2.1 Babel: 2.12.1 backcall: 0.2.0 beautifulsoup4: 4.11.2 blockdiag: 3.0.0 build: 0.10.0 certifi: 2021.10.8 cftime: 1.6.2 charset-normalizer: 3.1.0 ChimeraX-AddCharge: 1.5.9 ChimeraX-AddH: 2.2.3 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.3.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.9.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.43.10 ChimeraX-AtomicLibrary: 10.0.6 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3.2 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.8 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.2 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3.1 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-Clipper: 0.20.0 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.3 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.6.dev202303282212 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.4.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4 ChimeraX-DockPrep: 1.1.1 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ISOLDE: 1.6.dev0 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.0.12 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.12 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.9 ChimeraX-ModelPanel: 1.3.7 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.0 ChimeraX-NRRD: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.10.1 ChimeraX-PDB: 2.7 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-QScore: 1.0 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 3.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.1 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.8.3 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10.2 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.28.4 ChimeraX-uniprot: 2.2.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.1 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.1.3 contourpy: 1.0.7 cxservices: 1.2.2 cycler: 0.11.0 Cython: 0.29.33 debugpy: 1.6.6 decorator: 5.1.1 docutils: 0.19 executing: 1.2.0 filelock: 3.9.0 fonttools: 4.39.3 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.8.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.35 imagecodecs: 2022.2.22 imagesize: 1.4.1 importlib-metadata: 6.1.0 ipykernel: 6.21.1 ipython: 8.10.0 ipython-genutils: 0.2.0 ipywidgets: 8.0.6 jedi: 0.18.2 Jinja2: 3.1.2 jupyter-client: 8.0.2 jupyter-core: 5.3.0 jupyterlab-widgets: 3.0.7 kiwisolver: 1.4.4 line-profiler: 4.0.2 lxml: 4.9.2 lz4: 4.3.2 MarkupSafe: 2.1.2 matplotlib: 3.6.3 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.2 networkx: 2.8.8 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.8.4 numpy: 1.23.5 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.3.0 pip: 23.0 pkginfo: 1.9.6 platformdirs: 3.2.0 prompt-toolkit: 3.0.38 psutil: 5.9.4 ptyprocess: 0.7.0 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.14.0 pynrrd: 1.0.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.4.2 PyQt6-Qt6: 6.4.3 PyQt6-sip: 13.4.1 PyQt6-WebEngine-commercial: 6.4.0 PyQt6-WebEngine-Qt6: 6.4.3 python-dateutil: 2.8.2 pytz: 2023.3 pyzmq: 25.0.2 qtconsole: 5.4.0 QtPy: 2.3.1 RandomWords: 0.4.0 requests: 2.28.2 scipy: 1.9.3 setuptools: 67.4.0 setuptools-scm: 7.0.5 sfftk-rw: 0.7.3 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.4 sphinx: 6.1.3 sphinx-autodoc-typehints: 1.22 sphinxcontrib-applehelp: 1.0.4 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.1 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 tables: 3.7.0 tcia-utils: 1.2.0 tifffile: 2022.10.10 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.2 traitlets: 5.9.0 typing-extensions: 4.5.0 urllib3: 1.26.15 wcwidth: 0.2.6 webcolors: 1.12 wheel: 0.38.4 wheel-filename: 1.4.1 widgetsnbextension: 4.0.7 zipp: 3.15.0 }}} " defect closed normal Window Toolkit can't reproduce Tom Goddard all ChimeraX