id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 9100 Crash in event loop chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-12.2.1-arm64-arm-64bit ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Bus error Thread 0x000000028e8af000 (most recent call first): File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 576 in _handle_results File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x000000028d8a3000 (most recent call first): File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 528 in _handle_tasks File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x000000028c897000 (most recent call first): File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/selectors.py"", line 416 in select File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/connection.py"", line 936 in wait File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 499 in _wait_for_updates File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 519 in _handle_workers File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x000000028b88b000 (most recent call first): File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 114 in worker File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x000000028a87f000 (most recent call first): File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 114 in worker File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x0000000289873000 (most recent call first): File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 114 in worker File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x0000000288867000 (most recent call first): File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 114 in worker File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x000000028785b000 (most recent call first): File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 114 in worker File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x000000028684f000 (most recent call first): File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 114 in worker File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x0000000285843000 (most recent call first): File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 114 in worker File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x0000000284837000 (most recent call first): File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 114 in worker File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Current thread 0x00000001026e4580 (most recent call first): File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py"", line 275 in event_loop File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 892 in init File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 1043 in File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 87 in _run_code File ""/private/var/folders/yl/8gg55_g540vd2ht20hp9gfc00000gn/T/AppTranslocation/DCF94705-626E-49C9-8B2A-17EC2466B818/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 197 in _run_module_as_main {""app_name"":""ChimeraX"",""timestamp"":""2023-05-31 17:07:34.00 +1000"",""app_version"":"""",""slice_uuid"":""a5992708-d5b4-36ec-ac0a-e525f6105b56"",""build_version"":"""",""platform"":1,""share_with_app_devs"":1,""is_first_party"":1,""bug_type"":""309"",""os_version"":""macOS 12.2.1 (21D62)"",""incident_id"":""FBE4FD85-649A-46A4-892E-94C3AD5C74FB"",""name"":""ChimeraX""} { ""uptime"" : 440, ""procLaunch"" : ""2023-05-31 17:06:07.0408 +1000"", ""procRole"" : ""Unspecified"", ""version"" : 2, ""userID"" : 501, ""deployVersion"" : 210, ""modelCode"" : ""MacBookAir10,1"", ""procStartAbsTime"" : 8526863932, ""coalitionID"" : 1104, ""osVersion"" : { ""train"" : ""macOS 12.2.1"", ""build"" : ""21D62"", ""releaseType"" : ""User"" }, ""captureTime"" : ""2023-05-31 17:07:33.9064 +1000"", ""incident"" : ""FBE4FD85-649A-46A4-892E-94C3AD5C74FB"", ""bug_type"" : ""309"", ""pid"" : 1080, ""procExitAbsTime"" : 10611367444, ""translated"" : false, ""cpuType"" : ""ARM-64"", ""procName"" : ""ChimeraX"", ""procPath"" : ""\/private\/var\/folders\/*\/ChimeraX-1.6.1.app\/Contents\/MacOS\/ChimeraX"", ""parentProc"" : ""launchd"", ""parentPid"" : 1, ""coalitionName"" : ""edu.ucsf.cgl.ChimeraX"", ""crashReporterKey"" : ""C366B2D3-C96F-4AD3-11CA-8B30E4302849"", ""responsiblePid"" : 1056, ""sip"" : ""enabled"", ""vmRegionInfo"" : ""0x10bb93104 is in 0x10bb90000-0x10bb94000; bytes after start: 12548 bytes before end: 3835\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n VM_ALLOCATE 10bb50000-10bb90000 [ 256K] rw-\/rwx SM=PRV \n---> mapped file 10bb90000-10bb94000 [ 16K] r-x\/rwx SM=COW ...t_id=55e77273\n mapped file 10bb94000-10bb98000 [ 16K] r--\/rwx SM=COW ...t_id=54fa1973"", ""isCorpse"" : 1, ""exception"" : {""codes"":""0x000000000000000a, 0x000000010bb93104"",""rawCodes"":[10,4491653380],""type"":""EXC_BAD_ACCESS"",""signal"":""SIGBUS"",""subtype"":""KERN_MEMORY_ERROR at 0x000000010bb93104""}, ""ktriageinfo"" : ""VM - Object is not alive\n"", ""vmregioninfo"" : ""0x10bb93104 is in 0x10bb90000-0x10bb94000; bytes after start: 12548 bytes before end: 3835\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n VM_ALLOCATE 10bb50000-10bb90000 [ 256K] rw-\/rwx SM=PRV \n---> mapped file 10bb90000-10bb94000 [ 16K] r-x\/rwx SM=COW ...t_id=55e77273\n mapped file 10bb94000-10bb98000 [ 16K] r--\/rwx SM=COW ...t_id=54fa1973"", ""extMods"" : {""caller"":{""thread_create"":0,""thread_set_state"":0,""task_for_pid"":0},""system"":{""thread_create"":0,""thread_set_state"":0,""task_for_pid"":0},""targeted"":{""thread_create"":0,""thread_set_state"":0,""task_for_pid"":0},""warnings"":0}, ""faultingThread"" : 0, ""threads"" : 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""usedImages"" : [ { ""size"" : 0, ""source"" : ""A"", ""base"" : 0, ""uuid"" : ""00000000-0000-0000-0000-000000000000"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 4375445504, ""size"" : 393216, ""uuid"" : ""d21a73ea-79cd-36eb-8ac9-2c5cf5181a27"", ""path"" : ""\/usr\/lib\/dyld"", ""name"" : ""dyld"" } ], ""sharedCache"" : { ""base"" : 7642955776, ""size"" : 3091218432, ""uuid"" : ""296eb28e-6aeb-3129-8fa6-feb92261a4eb"" }, ""vmSummary"" : ""ReadOnly portion of Libraries: Total=608K resident=0K(0%) swapped_out_or_unallocated=608K(100%)\nWritable regions: Total=1.5G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.5G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nKernel Alloc Once 32K 1 \nMALLOC 240.2M 30 \nMALLOC guard page 96K 5 \nMALLOC_MEDIUM (reserved) 600.0M 5 reserved VM address space (unallocated)\nMALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)\nSTACK GUARD 112K 7 \nStack 11.7M 8 \nStack Guard 56.0M 1 \nVM_ALLOCATE 1.1G 89 \nVM_ALLOCATE (reserved) 160.0M 2 reserved VM address space (unallocated)\n__DATA 16K 1 \n__DATA_CONST 96K 1 \n__LINKEDIT 224K 1 \n__TEXT 384K 1 \ndyld private memory 1024K 1 \nmapped file 42.8M 196 \nshared memory 32K 2 \n=========== ======= ======= \nTOTAL 2.6G 352 \nTOTAL, minus reserved VM space 1.5G 352 \n"", ""legacyInfo"" : { ""threadTriggered"" : { } }, ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""607844aa04477260f58a8077"", ""factorPackIds"" : { ""SIRI_MORPHUN_ASSETS"" : ""6103050cbfe6dc472e1c982a"" }, ""deploymentId"" : 240000066 }, { ""rolloutId"" : ""60da5e84ab0ca017dace9abf"", ""factorPackIds"" : { }, ""deploymentId"" : 240000008 }, { ""rolloutId"" : ""602ad4dac86151000cf27e46"", ""factorPackIds"" : { ""SIRI_DICTATION_ASSETS"" : ""61fb0e87c773c43cde3bb80e"" }, ""deploymentId"" : 240000305 }, { ""rolloutId"" : ""60356660bbe37970735c5624"", ""factorPackIds"" : { }, ""deploymentId"" : 240000027 }, { ""rolloutId"" : ""601d9415f79519000ccd4b69"", ""factorPackIds"" : { ""SIRI_TEXT_TO_SPEECH"" : ""622657ce37186c771d5404ad"" }, ""deploymentId"" : 240000416 }, { ""rolloutId"" : ""60186475825c62000ccf5450"", ""factorPackIds"" : { }, ""deploymentId"" : 240000026 }, { ""rolloutId"" : ""63582c5f8a53461413999550"", ""factorPackIds"" : { }, ""deploymentId"" : 240000002 }, { ""rolloutId"" : ""5fb4245a1bbfe8005e33a1e1"", ""factorPackIds"" : { }, ""deploymentId"" : 240000021 }, { ""rolloutId"" : ""5ffde50ce2aacd000d47a95f"", ""factorPackIds"" : { }, ""deploymentId"" : 240000271 }, { ""rolloutId"" : ""5fc94383418129005b4e9ae0"", ""factorPackIds"" : { }, ""deploymentId"" : 240000614 }, { ""rolloutId"" : ""60f8ddccefea4203d95cbeef"", ""factorPackIds"" : { }, ""deploymentId"" : 240000025 }, { ""rolloutId"" : ""5f72dc58705eff005a46b3a9"", ""factorPackIds"" : { }, ""deploymentId"" : 240000015 } ], ""experiments"" : [ { ""treatmentId"" : ""6dd670af-0633-45e4-ae5f-122ae4df02be"", ""experimentId"" : ""64406ba83deb637ac8a04419"", ""deploymentId"" : 900000005 }, { ""treatmentId"" : ""b7255a7d-caf6-4b10-b2e1-28936518ab9a"", ""experimentId"" : ""63b8ec83fd1d345f491884ba"", ""deploymentId"" : 400000024 } ] }, ""reportNotes"" : [ ""thread_get_state(PAGEIN) returned 0x10000003: (ipc\/send) invalid destination port"", ""thread_get_state(EXCEPTION) returned 0x10000003: (ipc\/send) invalid destination port"", ""thread_get_state(FLAVOR) returned 0x10000003: (ipc\/send) invalid destination port"" ] } ===== Log before crash start ===== Startup Messages --- note | available bundle cache has not been initialized yet You can double click a model's Name or ID in the model panel to edit those fields UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 76.3 OpenGL renderer: Apple M1 OpenGL vendor: Apple Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.4.2, Qt 6.4.2 Qt runtime version: 6.4.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Air Model Identifier: MacBookAir10,1 Chip: Apple M1 Total Number of Cores: 8 (4 performance and 4 efficiency) Memory: 8 GB System Firmware Version: 7429.81.3 OS Loader Version: 7429.81.3 Software: System Software Overview: System Version: macOS 12.2.1 (21D62) Kernel Version: Darwin 21.3.0 Time since boot: 8 minutes Graphics/Displays: Apple M1: Chipset Model: Apple M1 Type: GPU Bus: Built-In Total Number of Cores: 7 Vendor: Apple (0x106b) Metal Family: Supported, Metal GPUFamily Apple 7 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal Installed Packages: alabaster: 0.7.13 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.2.1 Babel: 2.12.1 backcall: 0.2.0 beautifulsoup4: 4.11.2 blockdiag: 3.0.0 build: 0.10.0 certifi: 2021.10.8 cftime: 1.6.2 charset-normalizer: 3.1.0 ChimeraX-AddCharge: 1.5.9.1 ChimeraX-AddH: 2.2.5 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.3.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.9.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.43.10 ChimeraX-AtomicLibrary: 10.0.6 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3.2 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.8 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.2 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3.1 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.3 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.6.1 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.4.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4 ChimeraX-DockPrep: 1.1.1 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.0.12 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.12 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.9 ChimeraX-ModelPanel: 1.3.7 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.0 ChimeraX-NRRD: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.10.1 ChimeraX-PDB: 2.7.2 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 3.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.1 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.8.3 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Topography: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.28.4 ChimeraX-uniprot: 2.2.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.1 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.1.3 contourpy: 1.0.7 cxservices: 1.2.2 cycler: 0.11.0 Cython: 0.29.33 debugpy: 1.6.7 decorator: 5.1.1 docutils: 0.19 executing: 1.2.0 filelock: 3.9.0 fonttools: 4.39.3 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.8.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.35 imagecodecs: 2022.2.22 imagesize: 1.4.1 importlib-metadata: 6.6.0 ipykernel: 6.21.1 ipython: 8.10.0 ipython-genutils: 0.2.0 ipywidgets: 8.0.6 jedi: 0.18.2 Jinja2: 3.1.2 jupyter-client: 8.0.2 jupyter-core: 5.3.0 jupyterlab-widgets: 3.0.7 kiwisolver: 1.4.4 line-profiler: 4.0.2 lxml: 4.9.2 lz4: 4.3.2 MarkupSafe: 2.1.2 matplotlib: 3.6.3 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.2 networkx: 2.8.8 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.8.4 numpy: 1.23.5 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.3.0 pip: 23.0 pkginfo: 1.9.6 platformdirs: 3.5.0 prompt-toolkit: 3.0.38 psutil: 5.9.4 ptyprocess: 0.7.0 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.14.0 pynrrd: 1.0.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.4.2 PyQt6-Qt6: 6.4.3 PyQt6-sip: 13.4.1 PyQt6-WebEngine-commercial: 6.4.0 PyQt6-WebEngine-Qt6: 6.4.3 python-dateutil: 2.8.2 pytz: 2023.3 pyzmq: 25.0.2 qtconsole: 5.4.0 QtPy: 2.3.1 RandomWords: 0.4.0 requests: 2.28.2 scipy: 1.9.3 setuptools: 67.4.0 setuptools-scm: 7.0.5 sfftk-rw: 0.7.3 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.4.1 sphinx: 6.1.3 sphinx-autodoc-typehints: 1.22 sphinxcontrib-applehelp: 1.0.4 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.1 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 tables: 3.7.0 tcia-utils: 1.2.0 tifffile: 2022.10.10 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.3.1 traitlets: 5.9.0 typing-extensions: 4.5.0 tzdata: 2023.3 urllib3: 1.26.15 wcwidth: 0.2.6 webcolors: 1.12 wheel: 0.38.4 wheel-filename: 1.4.1 widgetsnbextension: 4.0.7 zipp: 3.15.0 }}} " defect closed normal Core can't reproduce Tom Goddard all ChimeraX