id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 894 Open cxs file error TSkillman@… "{{{ File Elaine open 5isz V1.cxs open 5isz style stick hide ribbon ~/c show /c & protein hbond (/c & protein) restrict cross reveal t # Reduce level of detail #graphics atomTri 10 bondTri 12 ribbonDiv 2 ribbonSide 4 # Export glTF format #save 5isz.glb center 0,0,0 size 2 shortVertexIndices true floatColors true transparency false # Exit ChimeraX #exit Error Log open ""F:/Box Sync/ChimeraX Tools/Elaine open 5isz V1.cxs"" Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\ui\gui.py"", line 458, in _qt_safe run(session, ""; "".join([""open "" + quote_if_necessary(p) for p in paths])) File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\commands\run.py"", line 31, in run results = command.run(text, log=log) File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2459, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\commands\open.py"", line 104, in open models = handle_unknown_kw(session.models.open, paths, format=format, name=name, **kw) File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\commands\open.py"", line 57, in handle_unknown_kw return f(*args, **kw) File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\models.py"", line 438, in open session, filenames, format=format, name=name, **kw) File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\io.py"", line 439, in open_multiple_data models, status = open_data(session, fspec, format=format, name=name, **kw) File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\io.py"", line 399, in open_data models, status = open_func(*args, **kw) File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\session.py"", line 742, in open session.restore(stream) File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\session.py"", line 465, in restore version = serialize.pickle_deserialize(stream) File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\serialize.py"", line 119, in pickle_deserialize return unpickler.load() _pickle.UnpicklingError: could not find MARK _pickle.UnpicklingError: could not find MARK File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\serialize.py"", line 119, in pickle_deserialize return unpickler.load() See log for complete Python traceback. If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and describe what you were doing and include a copy of the contents of the log. Don't include any data you wish to remain private since a publicly viewable bug report will be created. ________________________________ --CONFIDENTIALITY NOTICE--: The information contained in this email is intended for the exclusive use of the addressee and may contain confidential information. If you are not the intended recipient, you are hereby notified that any form of dissemination of this communication is strictly prohibited. www.benaroyaresearch.org }}} " defect closed normal Input/Output not a bug all ChimeraX