id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 8801 Struct Measure: wrapped C/C++ object of type QLabel has been deleted jitued@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-13.3-arm64-arm-64bit ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 1.5 (2022-11-24) © 2016-2022 Regents of the University of California. All rights reserved. > open > /Users/jitendramaharana/Desktop/02_Douge/02_CryoEM/03_Tail_tube/FIG_2/FIG_2A/Fig_1A.cxs Log from Thu Mar 30 13:19:33 2023UCSF ChimeraX version: 1.5 (2022-11-24) © 2016-2022 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open > /Users/jitendramaharana/Desktop/02_Douge/02_CryoEM/03_Tail_tube/06_TTPDynamics/01_gp13_18mer_S_.pdb Chain information for 01_gp13_18mer_S_.pdb #1 --- Chain | Description A B C D E F G H I J K L M N O P Q R | No description available > open > /Users/jitendramaharana/Desktop/02_Douge/02_CryoEM/03_Tail_tube/06_TTPDynamics/02_gp13_18mer_B_Ring2.pdb Chain information for 02_gp13_18mer_B_Ring2.pdb #2 --- Chain | Description A B C D E F G H I J K L M N O P Q R | No description available > hide #2 models > show #2 models > hide #1 models > hide #2 models > show #1 models > show #2 models > set bgColor white > hide atoms > show cartoons > transparency 80 > select /216-300 Nothing selected > select :216-300 20304 atoms, 20520 bonds, 3060 residues, 2 models selected > hide sel cartoons > transparency 50 > graphics silhouettes true > lighting flat > hide #2 models > select add #2 50904 atoms, 51912 bonds, 6930 residues, 2 models selected > select subtract #2 10152 atoms, 10260 bonds, 1530 residues, 1 model selected > select add #1 40752 atoms, 41652 bonds, 5400 residues, 1 model selected > select subtract #1 Nothing selected > show #2 models > hide #1 models > view orient [Repeated 1 time(s)] > turn x 90 > turn y 30 > turn y 5 [Repeated 2 time(s)] > camera ortho > view > show #1 models > view > select /A-F 27168 atoms, 27768 bonds, 3600 residues, 2 models selected > color sel orange > select /G-L 27168 atoms, 27768 bonds, 3600 residues, 2 models selected > color sel cornflower blue > select /M-R 27168 atoms, 27768 bonds, 3600 residues, 2 models selected > color sel hot pink > select clear > select #1/G-L :1-215 10200 atoms, 10458 bonds, 1290 residues, 1 model selected > ui tool show Axes/Planes/Centroids > define centroid sel color #ff2600 Centroid 'centroid' placed at [203.71198461 203.71233971 214.22003598] > select #2/G-L :1-215 10200 atoms, 10458 bonds, 1290 residues, 1 model selected > define centroid sel color #ff2600 Centroid 'centroid' placed at [203.65376392 203.79964902 214.1023651 ] > select #1/G-L :1-215 10200 atoms, 10458 bonds, 1290 residues, 1 model selected > define plane sel Plane 'plane' placed at [203.71198461 203.71233971 214.22003598] with normal [-2.47340738e-06 -9.16651633e-06 1.00000000e+00] and radius 56.8 > select #2/G-L :1-215 10200 atoms, 10458 bonds, 1290 residues, 1 model selected > define plane sel Plane 'plane' placed at [203.65376392 203.79964902 214.1023651 ] with normal [ 0.00599237 -0.00357784 0.99997564] and radius 57.3 > close #1.2 > close #2.2 > select #1/G-L :1-215 10200 atoms, 10458 bonds, 1290 residues, 1 model selected > define plane sel radius 50 Plane 'plane' placed at [203.71198461 203.71233971 214.22003598] with normal [-2.47340738e-06 -9.16651633e-06 1.00000000e+00] and radius 50.0 > select #2/G-L :1-215 10200 atoms, 10458 bonds, 1290 residues, 1 model selected > define plane sel radius 50 Plane 'plane' placed at [203.65376392 203.79964902 214.1023651 ] with normal [ 0.00599237 -0.00357784 0.99997564] and radius 50.0 > define plane sel radius 50 Plane 'plane' placed at [203.65376392 203.79964902 214.1023651 ] with normal [ 0.00599237 -0.00357784 0.99997564] and radius 50.0 > select #1/A-F :1-215 10200 atoms, 10458 bonds, 1290 residues, 1 model selected > define centroid sel color #ff2600 Centroid 'centroid' placed at [203.71091578 203.71159255 172.37838559] > define plane sel radius 50 Plane 'plane' placed at [203.71091578 203.71159255 172.37838559] with normal [-4.15108176e-05 -1.19584949e-05 9.99999999e-01] and radius 50.0 > select #2/A-F :1-215 10200 atoms, 10458 bonds, 1290 residues, 1 model selected > define centroid sel color #ff2600 Centroid 'centroid' placed at [205.66875735 204.11498765 174.490245 ] > define plane sel radius 50 Plane 'plane' placed at [205.66875735 204.11498765 174.490245 ] with normal [ 0.05423049 0.06121942 -0.99665001] and radius 50.0 > select #1/M-R :1-215 10200 atoms, 10458 bonds, 1290 residues, 1 model selected > define centroid sel color #ff2600 Centroid 'centroid' placed at [203.71290892 203.71228137 256.02223118] > define plane sel radius 50 Plane 'plane' placed at [203.71290892 203.71228137 256.02223118] with normal [-8.07490375e-05 -1.33492315e-04 9.99999988e-01] and radius 50.0 > select #2/M-R :1-215 10200 atoms, 10458 bonds, 1290 residues, 1 model selected > define centroid sel color #ff2600 Centroid 'centroid' placed at [204.65863137 205.43511206 253.74733637] > define plane sel radius 50 Plane 'plane' placed at [204.65863137 205.43511206 253.74733637] with normal [-0.07991395 -0.02779271 -0.99641423] and radius 50.0 > transparency 50 > transparency 80 > select :105@Ca 36 atoms, 36 residues, 2 models selected > show sel atoms > style sel sphere Changed 36 atom styles > select clear > show cartoons > hide cartoons > view orient > color #1.4 #ebebeb > color #1.6 #ebebeb > color #2.2 #ebebeb > color #2.3 #ebebeb > color #2.5 #ebebeb > color #2.7 #ebebeb > color #1.2 #ebebeb > save > /Users/jitendramaharana/Desktop/02_Douge/02_CryoEM/03_Tail_tube/06_TTPDynamics/TTP_dynamics_R2.cxs > transparency 80 > transparency 90 > graphics silhouettes false > graphics silhouettes true > lighting shadows true intensity 0.5 > lighting shadows false > lighting shadows true > lighting shadows false > show cartoons > view orient > turn x 90 > turn y 30 > save > /Users/jitendramaharana/Desktop/02_Douge/02_CryoEM/03_Tail_tube/06_TTPDynamics/TTP_dynamics_R2.cxs > lighting flat [Repeated 1 time(s)] > lighting full > lighting soft > lighting shadows true intensity 0.5 > lighting simple > lighting flat > lighting soft > lighting full > lighting shadows false > lighting simple > lighting soft [Repeated 2 time(s)] > hide cartoons > color bychain > chain A Unknown command: chain A > select /A 4528 atoms, 4628 bonds, 600 residues, 2 models selected > ui tool show ""Color Actions"" > select /M 4528 atoms, 4628 bonds, 600 residues, 2 models selected > color sel cyan > select /N 4528 atoms, 4628 bonds, 600 residues, 2 models selected > color sel orchid > select /G 4528 atoms, 4628 bonds, 600 residues, 2 models selected > select /G 4528 atoms, 4628 bonds, 600 residues, 2 models selected > select /G 4528 atoms, 4628 bonds, 600 residues, 2 models selected > color sel lime > select /H 4528 atoms, 4628 bonds, 600 residues, 2 models selected > color sel tomato > select /I 4528 atoms, 4628 bonds, 600 residues, 2 models selected > color sel dodger blue > select /J 4528 atoms, 4628 bonds, 600 residues, 2 models selected > color sel hot pink > select /K 4528 atoms, 4628 bonds, 600 residues, 2 models selected > color sel cyan > select /L 4528 atoms, 4628 bonds, 600 residues, 2 models selected > color sel orchid > show sel cartoons > select clear > show cartoons > select /J 4528 atoms, 4628 bonds, 600 residues, 2 models selected > color sel orange > color sel dark orange > select clear > lighting flat > select /A 4528 atoms, 4628 bonds, 600 residues, 2 models selected > color sel chocolate > color sel saddle brown > color sel crimson > color sel maroon > color sel dark red > color sel crimson > select /O 4528 atoms, 4628 bonds, 600 residues, 2 models selected > color sel gold > color sel orange > color sel coral > select /A 4528 atoms, 4628 bonds, 600 residues, 2 models selected > color sel chocolate > color sel goldenrod > color sel sandy brown > color sel chocolate > color sel saddle brown > color sel fire brick > color sel tomato > color sel dark salmon > color sel salmon > color sel coral > color sel tomato > select /H 4528 atoms, 4628 bonds, 600 residues, 2 models selected > color sel coral > select /O 4528 atoms, 4628 bonds, 600 residues, 2 models selected > color sel dark salmon > select /B 4528 atoms, 4628 bonds, 600 residues, 2 models selected > color sel royal blue > select /P 4528 atoms, 4628 bonds, 600 residues, 2 models selected > color sel cornflower blue > select /C 4528 atoms, 4628 bonds, 600 residues, 2 models selected > color sel dark orange > color sel orange red > select /Q 4528 atoms, 4628 bonds, 600 residues, 2 models selected > color sel gold > select /D 4528 atoms, 4628 bonds, 600 residues, 2 models selected > color sel deep sky blue > select /R 4528 atoms, 4628 bonds, 600 residues, 2 models selected > color sel light cyan > color sel sky blue > color sel light sky blue > color sel light blue > color sel pale turquoise > color sel powder blue > color sel light cyan > color sel sky blue > select /E 4528 atoms, 4628 bonds, 600 residues, 2 models selected > color sel hot pink > color sel deep pink > select /F 4528 atoms, 4628 bonds, 600 residues, 2 models selected > color sel forest green > color sel green > color sel chartreuse > color sel green > color sel forest green > color sel medium sea green > color sel sea green > color sel forest green > select /N 4528 atoms, 4628 bonds, 600 residues, 2 models selected > ui tool show ""Color Actions"" > color sel green yellow > select /M 4528 atoms, 4628 bonds, 600 residues, 2 models selected > color sel light pink > color sel pink > color sel light pink > color sel hot pink > color sel light pink > color sel pink > color sel light pink > ui tool show ""Color Actions"" > color sel violet > select /E 4528 atoms, 4628 bonds, 600 residues, 2 models selected > ui tool show ""Color Actions"" > color sel magenta > color sel hot pink [Repeated 1 time(s)] > color sel medium violet red > color sel dark magenta > color sel dark orchid > color sel medium violet red > color sel medium orchid > color sel magenta > select /M 4528 atoms, 4628 bonds, 600 residues, 2 models selected > color sel plum > color sel violet > color sel light pink > select /E 4528 atoms, 4628 bonds, 600 residues, 2 models selected > color sel hot pink > color sel orchid > color sel medium orchid > select /M 4528 atoms, 4628 bonds, 600 residues, 2 models selected > color sel pale violet red > color sel orchid > color sel hot pink > color sel blue violet > color sel orchid > color sel hot pink > select /L 4528 atoms, 4628 bonds, 600 residues, 2 models selected > color sel medium orchid > select /M 4528 atoms, 4628 bonds, 600 residues, 2 models selected > color sel violet > select /E 4528 atoms, 4628 bonds, 600 residues, 2 models selected > color sel blue violet > select clear > view orient [Repeated 1 time(s)] > turn x 90 [Repeated 4 time(s)] > hide cartoons > hide #!2 models > ui mousemode right distance > distance #!1/E:105@CA #!1/L:105@CA Distance between 01_gp13_18mer_S_.pdb #!1/E LEU 105 CA and /L LEU 105 CA: 59.885Å > distance #!1/M:105@CA #!1/L:105@CA Distance between 01_gp13_18mer_S_.pdb #!1/M LEU 105 CA and /L LEU 105 CA: 59.906Å > distance #!1/F:105@CA #!1/G:105@CA Distance between 01_gp13_18mer_S_.pdb #!1/F LEU 105 CA and /G LEU 105 CA: 59.893Å > distance #!1/G:105@CA #!1/N:105@CA Distance between 01_gp13_18mer_S_.pdb #!1/G LEU 105 CA and /N LEU 105 CA: 59.898Å > distance #!1/A:105@CA #!1/H:105@CA Distance between 01_gp13_18mer_S_.pdb #!1/A LEU 105 CA and /H LEU 105 CA: 59.902Å > distance #!1/H:105@CA #!1/O:105@CA Distance between 01_gp13_18mer_S_.pdb #!1/H LEU 105 CA and /O LEU 105 CA: 59.898Å > distance #!1/B:105@CA #!1/I:105@CA Distance between 01_gp13_18mer_S_.pdb #!1/B LEU 105 CA and /I LEU 105 CA: 59.885Å > distance #!1/I:105@CA #!1/P:105@CA Distance between 01_gp13_18mer_S_.pdb #!1/I LEU 105 CA and /P LEU 105 CA: 59.907Å > distance #!1/C:105@CA #!1/J:105@CA Distance between 01_gp13_18mer_S_.pdb #!1/C LEU 105 CA and /J LEU 105 CA: 59.892Å > distance #!1/J:105@CA #!1/Q:105@CA Distance between 01_gp13_18mer_S_.pdb #!1/J LEU 105 CA and /Q LEU 105 CA: 59.898Å > distance #!1/D:105@CA #!1/K:105@CA Distance between 01_gp13_18mer_S_.pdb #!1/D LEU 105 CA and /K LEU 105 CA: 59.901Å > distance #!1/K:105@CA #!1/R:105@CA Distance between 01_gp13_18mer_S_.pdb #!1/K LEU 105 CA and /R LEU 105 CA: 59.899Å > show #!2 models > hide #!1 models > distance #!2/D:105@CA #!2/K:105@CA Distance between 02_gp13_18mer_B_Ring2.pdb #!2/D LEU 105 CA and /K LEU 105 CA: 59.498Å > distance #!2/K:105@CA #!2/R:105@CA Distance between 02_gp13_18mer_B_Ring2.pdb #!2/K LEU 105 CA and /R LEU 105 CA: 60.369Å > distance #!2/E:105@CA #!2/L:105@CA Distance between 02_gp13_18mer_B_Ring2.pdb #!2/E LEU 105 CA and /L LEU 105 CA: 59.915Å > distance #!2/L:105@CA #!2/M:105@CA Distance between 02_gp13_18mer_B_Ring2.pdb #!2/L LEU 105 CA and /M LEU 105 CA: 60.189Å > distance #!2/F:105@CA #!2/G:105@CA Distance between 02_gp13_18mer_B_Ring2.pdb #!2/F LEU 105 CA and /G LEU 105 CA: 60.258Å > distance #!2/G:105@CA #!2/N:105@CA Distance between 02_gp13_18mer_B_Ring2.pdb #!2/G LEU 105 CA and /N LEU 105 CA: 59.811Å > distance #!2/A:105@CA #!2/H:105@CA Distance between 02_gp13_18mer_B_Ring2.pdb #!2/A LEU 105 CA and /H LEU 105 CA: 60.207Å > distance #!2/H:105@CA #!2/O:105@CA Distance between 02_gp13_18mer_B_Ring2.pdb #!2/H LEU 105 CA and /O LEU 105 CA: 59.683Å > distance #!2/B:105@CA #!2/I:105@CA Distance between 02_gp13_18mer_B_Ring2.pdb #!2/B LEU 105 CA and /I LEU 105 CA: 59.951Å > distance #!2/I:105@CA #!2/P:105@CA Distance between 02_gp13_18mer_B_Ring2.pdb #!2/I LEU 105 CA and /P LEU 105 CA: 59.322Å > distance #!2/J:105@CA #!2/C:105@CA Distance between 02_gp13_18mer_B_Ring2.pdb #!2/J LEU 105 CA and /C LEU 105 CA: 59.467Å > distance #!2/J:105@CA #!2/Q:105@CA Distance between 02_gp13_18mer_B_Ring2.pdb #!2/J LEU 105 CA and /Q LEU 105 CA: 59.674Å > show #!1 models > label height 2 > distance style decimalPlaces 1 [Repeated 2 time(s)] > hide #!2 models > transparency #1.2,4,6 0 > view orient > transparency #1.2,4,6 50 > view > show #!2 models > view orient > hide #!2 models > hide #!1 models > show #!1 models > show #!2 models > save > /Users/jitendramaharana/Desktop/02_Douge/02_CryoEM/03_Tail_tube/06_TTPDynamics/TTP_dynamics_R2.cxs > turn x 90 > turn y 35 > turn y -35 > turn y 40 > turn y -40 > turn y 30 > hide #!2 models > save > /Users/jitendramaharana/Desktop/02_Douge/02_CryoEM/03_Tail_tube/06_TTPDynamics/TTP_dynamics_R2.cxs > distance style symbol false [Repeated 2 time(s)] > distance style symbol true [Repeated 2 time(s)] > hide #3.1 models > show #3.1 models > hide #3.1 models > color #1.5 #ff2600 > color #1.5 #ff9300 > color #1.5 #941100 > color #2.1 #941100 > color #2.4 #941100 > color #2.1 #945200 > color #2.1 #a9a9a9 > color #1.1 #941100 > color #1.1 #929292 > color #1.1 #919191 > color #1.1 #5e5e5e > color #1.3 #5e5e5e > color #1.5 #5e5e5e > show #!2 models > hide #!1 models > color #2.1 #ff2600 > color #2.1 #ff7e79 > color #2.1 #ebebeb > color #2.1 #d6d6d6 > color #2.4 #d6d6d6 > color #2.6 #d6d6d6 > distance style symbol false [Repeated 2 time(s)] > distance style symbol true [Repeated 2 time(s)] > show #!1 models > show #3.1 models > hide #!1 models > show #!1 models > hide #!2 models > save > /Users/jitendramaharana/Desktop/02_Douge/02_CryoEM/03_Tail_tube/06_TTPDynamics/TTP_dynamics_R2.cxs ——— End of log from Thu Mar 30 13:19:33 2023 ——— opened ChimeraX session > open > /Users/jitendramaharana/Desktop/02_Douge/02_CryoEM/03_Tail_tube/02_tail_tube_B/02_gp13-18mer_B_real_space_refined_VV_G2y.pdb > /Users/jitendramaharana/Desktop/02_Douge/02_CryoEM/03_Tail_tube/02_tail_tube_B/cryosparc_P1_J506_008_volume_map_sharp.mrc > /Users/jitendramaharana/Desktop/02_Douge/02_CryoEM/03_Tail_tube/02_tail_tube_B/cryosparc_P1_J507_map_locres.mrc Chain information for 02_gp13-18mer_B_real_space_refined_VV_G2y.pdb #4 --- Chain | Description A B C D E F G H I J K L M N O P Q R | No description available Opened cryosparc_P1_J506_008_volume_map_sharp.mrc as #5, grid size 384,384,384, pixel 1.06, shown at level 0.296, step 2, values float32 Opened cryosparc_P1_J507_map_locres.mrc as #6, grid size 384,384,384, pixel 1.06, shown at level 8.51, step 2, values float32 > open > /Users/jitendramaharana/Desktop/02_Douge/02_CryoEM/03_Tail_tube/01_tail_tube_S/01_gp13-18mer_S_real_space_refined_VV_G2.pdb > /Users/jitendramaharana/Desktop/02_Douge/02_CryoEM/03_Tail_tube/01_tail_tube_S/cryosparc_P1_J210_008_volume_map_sharp_2_18A.mrc > /Users/jitendramaharana/Desktop/02_Douge/02_CryoEM/03_Tail_tube/01_tail_tube_S/cryosparc_P1_J211_map_locres.mrc Chain information for 01_gp13-18mer_S_real_space_refined_VV_G2.pdb #7 --- Chain | Description A B C D E F G H I J K L M N O P Q R | No description available Opened cryosparc_P1_J210_008_volume_map_sharp_2_18A.mrc as #8, grid size 768,768,768, pixel 0.531, shown at step 1, values float32 Opened cryosparc_P1_J211_map_locres.mrc as #9, grid size 768,768,768, pixel 0.531, shown at step 1, values float32 > close #7 > close #4 > view > hide #!9 models > hide #!6 models > hide #!8 models > show #!8 models > hide #!8 models > show #!8 models > hide #!5 models > show #!5 models > hide #!8 models > show #!8 models > hide #!8 models > show #!8 models > hide #!5 models > select add #8 2 models selected > select add #8 2 models selected > color #8 #797979ff models > view [Repeated 1 time(s)] > hide #!8 models > select add #8 2 models selected > show #!8 models > close #8 > close #9 > show #!5 models > show #!6 models > hide #!6 models > show #!2 models > close #1 > volume #5 level 0.2 > hide #!2 models > ui tool show Axes/Planes/Centroids Traceback (most recent call last): File ""/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/struct_measure/tool.py"", line 626, in clear_status if s.apc_status_label.text() == s.apc_status_tip: RuntimeError: wrapped C/C++ object of type QLabel has been deleted RuntimeError: wrapped C/C++ object of type QLabel has been deleted File ""/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/struct_measure/tool.py"", line 626, in clear_status if s.apc_status_label.text() == s.apc_status_tip: See log for complete Python traceback. OpenGL version: 4.1 Metal - 83.1 OpenGL renderer: Apple M1 Pro OpenGL vendor: Apple Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.3.1, Qt 6.3.1 Qt runtime version: 6.3.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro18,3 Model Number: MKGT3CT/A Chip: Apple M1 Pro Total Number of Cores: 10 (8 performance and 2 efficiency) Memory: 16 GB System Firmware Version: 8422.100.650 OS Loader Version: 8422.100.650 Software: System Software Overview: System Version: macOS 13.3 (22E252) Kernel Version: Darwin 22.4.0 Time since boot: 4 hours, 57 minutes Graphics/Displays: Apple M1 Pro: Chipset Model: Apple M1 Pro Type: GPU Bus: Built-In Total Number of Cores: 16 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-in Liquid Retina XDR Display Resolution: 3024 x 1964 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.1.0 Babel: 2.11.0 backcall: 0.2.0 biopython: 1.81 blockdiag: 3.0.0 build: 0.8.0 certifi: 2021.10.8 cftime: 1.6.2 charset-normalizer: 2.1.1 ChimeraX-AddCharge: 1.4 ChimeraX-AddH: 2.2.1 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2.1 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.6 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-ArtiaX: 0.3 ChimeraX-Atomic: 1.41.5 ChimeraX-AtomicLibrary: 8.0.3 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.7.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.1 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.4 ChimeraX-Clipper: 0.19.0 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.2 ChimeraX-CommandLine: 1.2.4 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.5 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-Cytoscape: 0.1 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.1 ChimeraX-DistMonitor: 1.3 ChimeraX-DockPrep: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.2 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ISOLDE: 1.5 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.2 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.1 ChimeraX-MatchMaker: 2.0.9 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.8 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.6 ChimeraX-ModelPanel: 1.3.6 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.1 ChimeraX-MouseModes: 1.1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.9.1 ChimeraX-PDB: 2.6.8 ChimeraX-PDBBio: 1.0 ChimeraX-PDBImages: 1.1 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PhenixUI: 1.1.9 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.7.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1 ChimeraX-StrudelScore: 0.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.1.3 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.24.3 ChimeraX-uniprot: 2.2.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.1.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.1 ChimeraX-WebServices: 1.1.0 ChimeraX-Zone: 1.0.1 colorama: 0.4.5 cxservices: 1.2 cycler: 0.11.0 Cython: 0.29.32 debugpy: 1.6.4 decorator: 5.1.1 docutils: 0.19 entrypoints: 0.4 executing: 1.2.0 filelock: 3.7.1 fonttools: 4.38.0 funcparserlib: 1.0.1 geomdl: 5.3.1 grako: 3.16.5 h5py: 3.7.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.33 imagecodecs: 2022.7.31 imagesize: 1.4.1 importlib-metadata: 5.1.0 ipykernel: 6.15.3 ipython: 8.4.0 ipython-genutils: 0.2.0 jedi: 0.18.1 Jinja2: 3.1.2 jupyter-client: 7.3.4 jupyter-core: 5.1.0 kiwisolver: 1.4.4 line-profiler: 3.5.1 lxml: 4.9.1 lz4: 4.0.2 MarkupSafe: 2.1.1 matplotlib: 3.5.2 matplotlib-inline: 0.1.6 MolecularDynamicsViewer: 1.4 mrcfile: 1.4.3 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.0 networkx: 2.8.5 numexpr: 2.8.4 numpy: 1.23.1 openvr: 1.23.701 packaging: 21.3 pandas: 1.5.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.2.0 pip: 22.2.2 pkginfo: 1.8.3 platformdirs: 2.5.4 prompt-toolkit: 3.0.33 psutil: 5.9.1 ptyprocess: 0.7.0 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.12.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 PyQt6-commercial: 6.3.1 PyQt6-Qt6: 6.3.2 PyQt6-sip: 13.4.0 PyQt6-WebEngine-commercial: 6.3.1 PyQt6-WebEngine-Qt6: 6.3.2 python-dateutil: 2.8.2 pytz: 2022.6 pyzmq: 24.0.1 qtconsole: 5.3.1 QtPy: 2.3.0 RandomWords: 0.4.0 recordtype: 1.4 requests: 2.28.1 scipy: 1.9.0 setuptools: 65.1.1 setuptools-scm: 7.0.5 sfftk-rw: 0.7.2 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 5.1.1 sphinx-autodoc-typehints: 1.19.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 starfile: 0.4.11 superqt: 0.4.1 tables: 3.7.0 threed-strudel: 0.9.18 tifffile: 2022.7.31 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.2 traitlets: 5.3.0 typing-extensions: 4.4.0 urllib3: 1.26.13 wcwidth: 0.2.5 webcolors: 1.12 wheel: 0.37.1 wheel-filename: 1.4.1 zipp: 3.11.0 }}} " defect closed normal Structure Analysis duplicate all ChimeraX