id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 8780 Unsupported scale factor (0.000000) detected on Display0 chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-13.2.1-arm64-arm-64bit ChimeraX Version: 1.6.dev202303282212 (2023-03-28 22:12:57 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Thread 0x00000002ab40b000 (most recent call first): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 576 in _handle_results File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x00000002aa3ff000 (most recent call first): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 528 in _handle_tasks File 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recent call first): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x0000000292a73000 (most recent call first): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File 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private memory 560K 4 \nmapped file 337.7M 74 \nshared memory 3168K 25 \n=========== ======= ======= \nTOTAL 4.8G 5354 \nTOTAL, minus reserved VM space 3.8G 5354 \n"", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""6112d17137f5d11121dcd4e2"", ""factorPackIds"" : { }, ""deploymentId"" : 240000250 }, { ""rolloutId"" : ""63582c5f8a53461413999550"", ""factorPackIds"" : { }, ""deploymentId"" : 240000002 } ], ""experiments"" : [ { ""treatmentId"" : ""c28e4ee6-1b08-4f90-8e05-2809e78310a3"", ""experimentId"" : ""6317d2003d24842ff850182a"", ""deploymentId"" : 400000012 } ] }, ""reportNotes"" : [ ""dyld_process_snapshot_create_for_process failed with 5"" ] } ===== Log before crash start ===== UCSF ChimeraX version: 1.6.dev202303282212 (2023-03-28) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open > /Users/panos/Documents/mounts/mntemstorage/emstorage2/panos/Datasets/OpuA/OpuA_1E3D1_low_salt_50mM/merged_bPD32s3-5_bPD33s1-2/Class3D/job048/run_it030_class002.mrc > format mrc Opened run_it030_class002.mrc as #1, grid size 128,128,128, pixel 2.04, shown at level 0.0391, step 1, values float32 > volume #1 level 0.00769 > open > /Users/panos/Documents/mounts/mntemstorage/emstorage2/panos/Datasets/OpuA/OpuA_1E3D1_low_salt_50mM/merged_bPD32s3-5_bPD33s1-2/MaskCreate/job055/mask.mrc Opened mask.mrc as #2, grid size 128,128,128, pixel 2.04, shown at level 1, step 1, values float32 > volume #2 level 1 > volume #2 > volume #2 style mesh > open > /Users/panos/Documents/mounts/mntemstorage/emstorage2/panos/Datasets/OpuA/OpuA_1D1_APO/all_combined_Hendirk/Class3D/job033/run_it025_class025_handness.mrc > format mrc Opened run_it025_class025_handness.mrc as #3, grid size 128,128,128, pixel 2.02, shown at level 0.04, step 1, values float32 > select add #3 2 models selected > ui mousemode right ""rotate selected models"" > view matrix models > #3,0.49821,-0.77784,0.38307,107.62,0.86622,0.42713,-0.25929,-10.663,0.038066,0.461,0.88658,-44.912 > ui mousemode right ""translate selected models"" > view matrix models > #3,0.49821,-0.77784,0.38307,119.66,0.86622,0.42713,-0.25929,-4.0738,0.038066,0.461,0.88658,-51.899 > view matrix models > #3,0.49821,-0.77784,0.38307,119.98,0.86622,0.42713,-0.25929,-4.7239,0.038066,0.461,0.88658,-52.438 > ui mousemode right ""rotate selected models"" > view matrix models > #3,0.69522,-0.5086,0.50793,45.842,0.71862,0.50731,-0.47562,33.412,-0.015776,0.69567,0.71819,-51.208 > open > /Users/panos/Documents/mounts/mntemstorage/emstorage2/panos/Datasets/OpuA/OpuA_1D1_APO/all_combined_Hendirk/Class3D/job033/run_it025_class002.mrc Opened run_it025_class002.mrc as #4, grid size 128,128,128, pixel 2.02, shown at level 0.04, step 1, values float32 > close #3 > select add #4 2 models selected > view matrix models > #4,-0.92824,-0.35351,-0.11579,305.48,0.25447,-0.83049,0.49552,119.93,-0.27133,0.43049,0.86085,1.9883 > view matrix models > #4,-0.96636,-0.17784,0.18577,249.84,0.25678,-0.7072,0.65873,83.512,0.014233,0.68428,0.72908,-47.647 > view matrix models > #4,-0.28774,-0.7326,0.61685,171.84,0.82277,0.14054,0.55072,-76.022,-0.49015,0.66599,0.56232,41.372 > ui mousemode right ""translate selected models"" > view matrix models > #4,-0.28774,-0.7326,0.61685,191.87,0.82277,0.14054,0.55072,-65.285,-0.49015,0.66599,0.56232,31.465 > ui mousemode right ""rotate selected models"" > view matrix models > #4,-0.37375,-0.59795,0.70906,174.79,0.63653,0.39068,0.66498,-86.098,-0.67464,0.69988,0.23459,94.258 > ui mousemode right ""translate selected models"" > view matrix models > #4,-0.37375,-0.59795,0.70906,163.44,0.63653,0.39068,0.66498,-78.051,-0.67464,0.69988,0.23459,94.639 > select add #2 4 models selected > select subtract #2 2 models selected > select add #1 4 models selected > fitmap #1 inMap #4 Fit map run_it030_class002.mrc in map run_it025_class002.mrc using 55001 points correlation = 0.9663, correlation about mean = 0.8706, overlap = 78.78 steps = 100, shift = 11.6, angle = 19.4 degrees Position of run_it030_class002.mrc (#1) relative to run_it025_class002.mrc (#4) coordinates: Matrix rotation and translation -0.60976844 0.45907432 -0.64609072 236.30879674 -0.63600414 0.20301780 0.74450151 89.90316127 0.47294944 0.86488990 0.16817932 -68.37840695 Axis 0.07666431 -0.71261396 -0.69735495 Axis point 145.84229098 0.00000000 2.17233558 Rotation angle (degrees) 128.26398836 Shift along axis 1.73422495 > volume #1 level 0.007044 > volume #4 level 0.007099 > hide #!2 models > color #1 #99afc1ff models > color #4 #f7d3bdff models > color #4 #dcae9cff models > color #1 #8798a4ff models > color #1 #71a3a4ff models > color #1 #4e75a4ff models > color #1 #6fa7ebff models > color #1 #70a1ebff models > color #1 #79b6ebff models > open > /Users/panos/Documents/mounts/mntemstorage/emstorage2/panos/Datasets/OpuA/OpuA_1E3D1_low_salt_100mM/bPD1s4/Refine3D/job026/run_class001.mrc Opened run_class001.mrc as #3, grid size 128,128,128, pixel 2.04, shown at level 0.041, step 1, values float32 > select subtract #1 2 models selected > ui mousemode right ""rotate selected models"" > view matrix models > #4,-0.63373,-0.64938,-0.42036,354.88,-0.62514,0.10985,0.77274,127.68,-0.45562,0.75249,-0.47557,148.42 > undo > select subtract #4 Nothing selected > select add #3 2 models selected > view matrix models > #3,-0.54263,-0.83975,-0.01916,288.49,0.81852,-0.53375,0.21246,83.665,-0.18864,0.099603,0.97698,11.083 > ui mousemode right ""translate selected models"" > view matrix models > #3,-0.54263,-0.83975,-0.01916,307.03,0.81852,-0.53375,0.21246,87.536,-0.18864,0.099603,0.97698,13.804 > volume flip #3 axis z Opened run_class001.mrc z flip as #5, grid size 128,128,128, pixel 2.04, shown at step 1, values float32 > select subtract #3 Nothing selected > select add #5 2 models selected > ui mousemode right ""rotate selected models"" > view matrix models > #5,-0.58907,-0.7947,0.14645,283.99,0.58664,-0.29593,0.75385,9.3194,-0.55574,0.52998,0.64052,43.874 > view matrix models > #5,-0.63038,-0.58558,0.50962,212,0.741,-0.25825,0.61986,4.901,-0.23137,0.76837,0.59671,-18.556 > view matrix models > #5,-0.37097,-0.82251,0.43112,224.52,0.89611,-0.19525,0.39858,8.8258,-0.24365,0.53419,0.80949,-14.876 > select add #4 4 models selected > fitmap #4 inMap #5 Fit map run_it025_class002.mrc in map run_class001.mrc z flip using 59777 points correlation = 0.953, correlation about mean = 0.8193, overlap = 80.46 steps = 172, shift = 10.3, angle = 31.8 degrees Position of run_it025_class002.mrc (#4) relative to run_class001.mrc z flip (#5) coordinates: Matrix rotation and translation 0.57082706 0.80513071 0.16100001 -74.17374813 -0.38977045 0.43830003 -0.80992104 224.26687940 -0.72265861 0.39957180 0.56400967 102.15244539 Axis 0.63121991 0.46117091 -0.62360469 Axis point 0.00000000 35.27501724 256.47683633 Rotation angle (degrees) 73.34737889 Shift along axis -7.09732960 > select add #3 6 models selected > select subtract #3 4 models selected > select add #1 6 models selected Fit in map shortcut requires 1 displayed atomic model and 1 map or two maps, got 0 atomic models, 3 maps. > select subtract #5 4 models selected > fitmap #1 inMap #4 Fit map run_it030_class002.mrc in map run_it025_class002.mrc using 56958 points correlation = 0.9658, correlation about mean = 0.8777, overlap = 78.85 steps = 156, shift = 7.91, angle = 31.8 degrees Position of run_it030_class002.mrc (#1) relative to run_it025_class002.mrc (#4) coordinates: Matrix rotation and translation -0.60941047 0.45934539 -0.64623578 236.27236714 -0.63598926 0.20348640 0.74438629 89.87937470 0.47343060 0.86463582 0.16813199 -68.41216859 Axis 0.07654595 -0.71273393 -0.69724534 Axis point 145.83869646 0.00000000 2.20654411 Rotation angle (degrees) 128.23556245 Shift along axis 1.72567796 > volume #3 level 0.01422 > select add #5 6 models selected > select subtract #4 4 models selected > view matrix models > #1,0.84539,0.53123,-0.055761,-42.425,-0.42905,0.73751,0.52153,41.911,0.31818,-0.41697,0.85141,29.686,#5,-0.37661,-0.8034,0.46121,218.76,0.88742,-0.17003,0.42846,2.7315,-0.2658,0.57065,0.77699,-12.026 > undo > select subtract #1 2 models selected > select subtract #5 Nothing selected > select add #5 2 models selected > hide #!3 models > volume #3 level 0.06246 > volume #5 level 0.009296 > volume #5 level 0.01087 > color #5 #90d8ffff models > color #5 #7bbadcff models > color #5 #6da4c2ff models > color #5 #6da5c3ff models > color #5 #79b7d8ff models > color #5 #71accbff models > color #5 #63bacbff models > volume #5 level 0.008705 > surface dust #5 size 20.4 > volume #5 level 0.008902 > volume #1 level 0.005752 > surface dust #5 size 20.4 > volume #1 level 0.005536 > select subtract #5 Nothing selected > volume #1 level 0.006613 > volume #5 level 0.01067 > set bgColor white > graphics silhouettes true > graphics silhouettes true width 1 > save ""/Users/panos/Google Drive/My Drive/OpuA/Chimera Sessions/OpuA_wt_SBD- > whereabouts_Hendrik high salt_50mM and 100mM.cxs"" > color #5 #a7d4d5ff models > surface dust #1 size 20.4 > surface dust #4 size 20.2 > surface dust #5 size 20.4 > volume #5 level 0.01008 > volume #1 level 0.05464 > volume #1 level 0.005967 > volume #5 level 0.00713 > hide #!5 models > show #!5 models > hide #!5 models > show #!5 models > hide #!5 models > show #!5 models > hide #!5 models > show #!5 models > hide #!5 models > show #!5 models > show #!3 models > hide #!1 models > hide #!5 models > volume #3 level 0.03824 > show #!4 models > hide #!4 models > show #!5 models > hide #!5 models > volume #3 level 0.01481 > show #!5 models > show #!4 models > hide #!4 models > hide #!5 models > hide #!3 models > show #!5 models > show #!3 models > show #!2 models > hide #!2 models > show #!1 models > hide #!3 models > show #!4 models > hide #!4 models > hide #!1 models > select add #5 2 models selected > show #!1 models > view matrix models > #5,-0.374,-0.8248,0.42406,226.12,0.89812,-0.20806,0.38741,11.782,-0.23131,0.52575,0.81859,-16.391 > undo > turn #5 180 Expected an axis vector or a keyword > turn x #5 180 Expected a number or a keyword > view matrix models > #5,-0.9765,-0.1022,0.18976,229.89,-0.19653,0.78365,-0.58929,133.31,-0.088483,-0.61273,-0.78532,328.06 > view matrix models > #5,-0.97916,0.17487,0.10328,202.13,0.071833,0.77386,-0.62926,105.9,-0.18997,-0.60873,-0.7703,338.4 > ui mousemode right ""translate selected models"" > view matrix models > #5,-0.97916,0.17487,0.10328,221.86,0.071833,0.77386,-0.62926,113.23,-0.18997,-0.60873,-0.7703,331.03 > fitmap #5 inMap #1 Fit map run_class001.mrc z flip in map run_it030_class002.mrc using 64737 points correlation = 0.9877, correlation about mean = 0.9634, overlap = 81.23 steps = 80, shift = 12.8, angle = 9.64 degrees Position of run_class001.mrc z flip (#5) relative to run_it030_class002.mrc (#1) coordinates: Matrix rotation and translation -0.91888403 -0.39204506 0.04419050 291.30513062 -0.38742287 0.87549683 -0.28880587 106.57800489 0.07453627 -0.28249951 -0.95636728 283.31685122 Axis 0.20124383 -0.96837214 0.14750024 Axis point 155.57913813 0.00000000 150.95597597 Rotation angle (degrees) 179.10222737 Shift along axis -2.79450444 > volume #5 level 0.00969 > hide #!5 models > show #!5 models Unsupported scale factor (0.000000) detected on Display0 QPainter::begin: Paint device returned engine == 0, type: 3 ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.6.dev202303282212 (2023-03-28) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 83 OpenGL renderer: Apple M1 OpenGL vendor: Apple Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.4.2, Qt 6.4.2 Qt runtime version: 6.4.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro17,1 Model Number: Z11B000V6N/A Chip: Apple M1 Total Number of Cores: 8 (4 performance and 4 efficiency) Memory: 16 GB System Firmware Version: 8419.80.7 OS Loader Version: 8419.80.7 Software: System Software Overview: System Version: macOS 13.2.1 (22D68) Kernel Version: Darwin 22.3.0 Time since boot: 6 days, 21 hours, 48 minutes Graphics/Displays: Apple M1: Chipset Model: Apple M1 Type: GPU Bus: Built-In Total Number of Cores: 8 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal SAMSUNG: Resolution: 6016 x 3384 UI Looks like: 3008 x 1692 @ 60.00Hz Mirror: Off Online: Yes Rotation: Supported Installed Packages: alabaster: 0.7.13 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.2.1 Babel: 2.12.1 backcall: 0.2.0 beautifulsoup4: 4.11.2 blockdiag: 3.0.0 build: 0.10.0 certifi: 2021.10.8 cftime: 1.6.2 charset-normalizer: 3.1.0 ChimeraX-AddCharge: 1.5.9 ChimeraX-AddH: 2.2.3 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.3.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.9.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.43.10 ChimeraX-AtomicLibrary: 10.0.6 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3.2 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.8 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.2 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3.1 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-Clipper: 0.20.0 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.3 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.6.dev202303282212 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.4.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4 ChimeraX-DockPrep: 1.1.1 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ISOLDE: 1.6.dev0 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.0.12 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.12 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.9 ChimeraX-ModelPanel: 1.3.7 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.0 ChimeraX-NRRD: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.10.1 ChimeraX-PDB: 2.7 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-QScore: 1.0 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 3.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.1 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.8.3 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10.2 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.28.4 ChimeraX-uniprot: 2.2.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.1 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.1.3 contourpy: 1.0.7 cxservices: 1.2.2 cycler: 0.11.0 Cython: 0.29.33 debugpy: 1.6.6 decorator: 5.1.1 docutils: 0.19 executing: 1.2.0 filelock: 3.9.0 fonttools: 4.39.3 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.8.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.35 imagecodecs: 2022.2.22 imagesize: 1.4.1 importlib-metadata: 6.1.0 ipykernel: 6.21.1 ipython: 8.10.0 ipython-genutils: 0.2.0 ipywidgets: 8.0.6 jedi: 0.18.2 Jinja2: 3.1.2 jupyter-client: 8.0.2 jupyter-core: 5.3.0 jupyterlab-widgets: 3.0.7 kiwisolver: 1.4.4 line-profiler: 4.0.2 lxml: 4.9.2 lz4: 4.3.2 MarkupSafe: 2.1.2 matplotlib: 3.6.3 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.2 networkx: 2.8.8 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.8.4 numpy: 1.23.5 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.3.0 pip: 23.0 pkginfo: 1.9.6 platformdirs: 3.2.0 prompt-toolkit: 3.0.38 psutil: 5.9.4 ptyprocess: 0.7.0 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.14.0 pynrrd: 1.0.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.4.2 PyQt6-Qt6: 6.4.3 PyQt6-sip: 13.4.1 PyQt6-WebEngine-commercial: 6.4.0 PyQt6-WebEngine-Qt6: 6.4.3 python-dateutil: 2.8.2 pytz: 2023.3 pyzmq: 25.0.2 qtconsole: 5.4.0 QtPy: 2.3.1 RandomWords: 0.4.0 requests: 2.28.2 scipy: 1.9.3 setuptools: 67.4.0 setuptools-scm: 7.0.5 sfftk-rw: 0.7.3 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.4 sphinx: 6.1.3 sphinx-autodoc-typehints: 1.22 sphinxcontrib-applehelp: 1.0.4 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.1 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 tables: 3.7.0 tcia-utils: 1.2.0 tifffile: 2022.10.10 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.2 traitlets: 5.9.0 typing-extensions: 4.5.0 urllib3: 1.26.15 wcwidth: 0.2.6 webcolors: 1.12 wheel: 0.38.4 wheel-filename: 1.4.1 widgetsnbextension: 4.0.7 zipp: 3.15.0 }}} " defect closed normal Window Toolkit can't reproduce Tom Goddard all ChimeraX