id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 8759 Crash in QMainWindow::removeDockWidget chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-10.16-x86_64-i386-64bit ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Thread 0x000070001a55f000 (most recent call first): File ""/private/var/folders/xw/qnsy1ktj7yb3hcflq04bz_k40000gn/T/AppTranslocation/368B44F6-C194-4391-B820-8A21CFAA1411/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 316 in wait File ""/private/var/folders/xw/qnsy1ktj7yb3hcflq04bz_k40000gn/T/AppTranslocation/368B44F6-C194-4391-B820-8A21CFAA1411/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 574 in wait File ""/private/var/folders/xw/qnsy1ktj7yb3hcflq04bz_k40000gn/T/AppTranslocation/368B44F6-C194-4391-B820-8A21CFAA1411/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 1297 in run File ""/private/var/folders/xw/qnsy1ktj7yb3hcflq04bz_k40000gn/T/AppTranslocation/368B44F6-C194-4391-B820-8A21CFAA1411/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/private/var/folders/xw/qnsy1ktj7yb3hcflq04bz_k40000gn/T/AppTranslocation/368B44F6-C194-4391-B820-8A21CFAA1411/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Current thread 0x000000010e046600 (most recent call first): File ""/private/var/folders/xw/qnsy1ktj7yb3hcflq04bz_k40000gn/T/AppTranslocation/368B44F6-C194-4391-B820-8A21CFAA1411/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py"", line 2301 in destroy File ""/private/var/folders/xw/qnsy1ktj7yb3hcflq04bz_k40000gn/T/AppTranslocation/368B44F6-C194-4391-B820-8A21CFAA1411/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py"", line 2165 in _destroy File ""/private/var/folders/xw/qnsy1ktj7yb3hcflq04bz_k40000gn/T/AppTranslocation/368B44F6-C194-4391-B820-8A21CFAA1411/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py"", line 772 in remove_tool File ""/private/var/folders/xw/qnsy1ktj7yb3hcflq04bz_k40000gn/T/AppTranslocation/368B44F6-C194-4391-B820-8A21CFAA1411/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py"", line 335 in remove_tool File ""/private/var/folders/xw/qnsy1ktj7yb3hcflq04bz_k40000gn/T/AppTranslocation/368B44F6-C194-4391-B820-8A21CFAA1411/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/tools.py"", line 154 in delete File ""/private/var/folders/xw/qnsy1ktj7yb3hcflq04bz_k40000gn/T/AppTranslocation/368B44F6-C194-4391-B820-8A21CFAA1411/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/seq_view/tool.py"", line 510 in delete File ""/private/var/folders/xw/qnsy1ktj7yb3hcflq04bz_k40000gn/T/AppTranslocation/368B44F6-C194-4391-B820-8A21CFAA1411/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py"", line 639 in close_request File ""/private/var/folders/xw/qnsy1ktj7yb3hcflq04bz_k40000gn/T/AppTranslocation/368B44F6-C194-4391-B820-8A21CFAA1411/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py"", line 2267 in File ""/private/var/folders/xw/qnsy1ktj7yb3hcflq04bz_k40000gn/T/AppTranslocation/368B44F6-C194-4391-B820-8A21CFAA1411/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py"", line 283 in event_loop File ""/private/var/folders/xw/qnsy1ktj7yb3hcflq04bz_k40000gn/T/AppTranslocation/368B44F6-C194-4391-B820-8A21CFAA1411/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 884 in init File 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Bytes after previous region: 50947054228425 Bytes before following region: 54600660298808\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n VM_ALLOCATE 141e10000-141f80000 [ 1472K] rw-\/rwx SM=PRV \n---> GAP OF 0x5ffebe080000 BYTES\n MALLOC_NANO 600000000000-600008000000 [128.0M] rw-\/rwx SM=PRV "", ""isCorpse"" : 1, ""exception"" : {""codes"":""0x0000000000000001, 0x00002e574b09d3c8"",""rawCodes"":[1,50952455967688],""type"":""EXC_BAD_ACCESS"",""signal"":""SIGSEGV"",""subtype"":""KERN_INVALID_ADDRESS at 0x00002e574b09d3c8""}, ""vmregioninfo"" : ""0x2e574b09d3c8 is not in any region. 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""5fb4245a1bbfe8005e33a1e1"", ""factorPackIds"" : { }, ""deploymentId"" : 240000021 }, { ""rolloutId"" : ""5f72dc58705eff005a46b3a9"", ""factorPackIds"" : { }, ""deploymentId"" : 240000015 }, { ""rolloutId"" : ""60f8ddccefea4203d95cbeef"", ""factorPackIds"" : { ""NETWORK_SERVICE_PROXY_CONFIG_UPDATE"" : ""6401414cc679dd6bc5828183"" }, ""deploymentId"" : 240000025 }, { ""rolloutId"" : ""5fc94383418129005b4e9ae0"", ""factorPackIds"" : { }, ""deploymentId"" : 240000614 }, { ""rolloutId"" : ""5ffde50ce2aacd000d47a95f"", ""factorPackIds"" : { }, ""deploymentId"" : 240000255 } ], ""experiments"" : [ { ""treatmentId"" : ""c28e4ee6-1b08-4f90-8e05-2809e78310a3"", ""experimentId"" : ""6317d2003d24842ff850182a"", ""deploymentId"" : 400000012 } ] } } ===== Log before crash start ===== UCSF ChimeraX version: 1.5 (2022-11-24) © 2016-2022 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open 2I3C format mmcif fromDatabase pdb 2i3c title: Crystal Structure of an Aspartoacylase from Homo Sapiens [more info...] Chain information for 2i3c #1 --- Chain | Description | UniProt A B | Aspartoacylase | ACY2_HUMAN Non-standard residues in 2i3c #1 --- PO4 — phosphate ion ZN — zinc ion > turn y 1 90 > set bgColor white > select /A 2465 atoms, 2507 bonds, 5 pseudobonds, 321 residues, 2 models selected > select /B:9-310 2430 atoms, 2491 bonds, 302 residues, 1 model selected > select /A:9-310 2430 atoms, 2491 bonds, 302 residues, 1 model selected > select :PO4 40 atoms, 32 bonds, 8 residues, 1 model selected > select :PO4 40 atoms, 32 bonds, 8 residues, 1 model selected > select :PO4 40 atoms, 32 bonds, 8 residues, 1 model selected > select :ZN 2 atoms, 2 residues, 1 model selected > select :PO4 40 atoms, 32 bonds, 8 residues, 1 model selected > select /A:9-310 2430 atoms, 2491 bonds, 302 residues, 1 model selected > color sel red > select /B:9-310 2430 atoms, 2491 bonds, 302 residues, 1 model selected > color sel yellow > turn y 1 90 > 2dlabels text ’Monomer 1’ color red size 26 x .03 y .92 Expected a keyword > 2dlabels text ’monomer 1’ color red size 26 x .03 y .92 Expected a keyword > 2dlabels text ’monomerA’ color red size 26 xpos .03 ypos .92 > 2dlabels text ’monomerA’ color red size 26 xpos .03 ypos .82 > 2dlabels text ’monomerA’ color red size 26 xpos .03 ypos .72 > 2dlabels text monomer A color red size 26 x .03 y .72 Expected a keyword > 2dlabels text ""monomer A"" color red size 26 xpos .03 ypos .72 > close labels Expected a models specifier or a keyword > select add #2 2430 atoms, 2491 bonds, 302 residues, 6 models selected > hide #!2 models > 2dlabels text ""monomer A"" color red size 26 xpos .03 ypos .72 > show #!2 models > turn y 1 90 > delete labels Missing or invalid ""atoms"" argument: invalid atoms specifier > delete label Missing or invalid ""atoms"" argument: invalid atoms specifier > close > open 2I3C format mmcif fromDatabase pdb 2i3c title: Crystal Structure of an Aspartoacylase from Homo Sapiens [more info...] Chain information for 2i3c #1 --- Chain | Description | UniProt A B | Aspartoacylase | ACY2_HUMAN Non-standard residues in 2i3c #1 --- PO4 — phosphate ion ZN — zinc ion > turn y 1 90 > select /A:9-310 2430 atoms, 2491 bonds, 302 residues, 1 model selected > 2dlabels text ""monomer A"" color red size 26 xpos .03 ypos .72 > 2dlabels text ""monomer A"" color red size 26 xpos .08 ypos .72 > 2dlabels text ""monomer A"" color red size 26 xpos .20 ypos .72 > 2dlabels text ""monomer A"" color red size 26 xpos .90 ypos .72 > 2dlabels text ""monomer A"" color red size 26 xpos .70 ypos .72 > 2dlabels text ""monomer A"" color red size 26 xpos .60 ypos .72 > 2dlabels text ""monomer A"" color red size 26 xpos .75 ypos .72 > close > open 2I3C format mmcif fromDatabase pdb 2i3c title: Crystal Structure of an Aspartoacylase from Homo Sapiens [more info...] Chain information for 2i3c #1 --- Chain | Description | UniProt A B | Aspartoacylase | ACY2_HUMAN Non-standard residues in 2i3c #1 --- PO4 — phosphate ion ZN — zinc ion > turn y 1 90 > select /A:9-310 2430 atoms, 2491 bonds, 302 residues, 1 model selected > color sel red > select /B:9-310 2430 atoms, 2491 bonds, 302 residues, 1 model selected > color sel blue > 2dlabels text ""monomer A"" color red size 26 xpos .03 ypos .72 > 2dlabels text 'monomer B’ color blue size 26 x .75 y .72 Invalid ""text"" argument: incomplete quoted text > 2dlabels text monomer B color blue size 26 x .75 y .72 Expected a keyword > 2dlabels text ""monomer B"" color blue size 26 xpos .75 ypos .72 > movie record > turn y 2 180 > wait 180 > movie encode /Users/zahirahkargbo/Desktop/movie3.mp4 Movie saved to /Users/zahirahkargbo/Desktop/movie3.mp4 > close > open 2I3C format mmcif fromDatabase pdb 2i3c title: Crystal Structure of an Aspartoacylase from Homo Sapiens [more info...] Chain information for 2i3c #1 --- Chain | Description | UniProt A B | Aspartoacylase | ACY2_HUMAN Non-standard residues in 2i3c #1 --- PO4 — phosphate ion ZN — zinc ion > turn y 1 90 > label #1 attribute name > ave my_transparent_image.png trans Unknown command: ave my_transparent_image.png trans > save my_transparent_image.png transparentBackground Missing ""transparentBackground"" keyword's argument > save /Users/zahirahkargbo/Desktop/image1.png supersample 3 > turn y 1 90 > movie record > turn y 1 90 > movie encode Movie encoding failed because no images were recorded. > movie record > turn y 1 90 > movie encode Movie encoding failed because no images were recorded. > movie record > turn y 1 90 > movie stop > rock y 2 180 cycle 30 > label #1 text ""{0.name} {0.number}{0.insertion_code}"" > label #1 attribute name > oll y 2 720 rock 12 Unknown command: oll y 2 720 rock 12 > oll y 2 720 rock 12 Unknown command: oll y 2 720 rock 12 > roll y 2 720 rock 120 > movie record > rock y 2 180 cycle 30 > movie encode Movie saved to /Users/zahirahkargbo/Desktop/movie.mp4 > movie record > rock y 2 180 cycle 30 > movie encode Movie encoding failed because no images were recorded. > rock y 2 180 cycle 30 > close > open 2I3C format mmcif fromDatabase pdb 2i3c title: Crystal Structure of an Aspartoacylase from Homo Sapiens [more info...] Chain information for 2i3c #1 --- Chain | Description | UniProt A B | Aspartoacylase | ACY2_HUMAN Non-standard residues in 2i3c #1 --- PO4 — phosphate ion ZN — zinc ion > rock y 2 180 cycle 30 > turn y 1 90 > turn z 1 90 > label #1 attribute name > rock y 2 180 cycle 30 > movie record > rock y 2 180 cycle 30 > wait 180 > movie encode Movie saved to /Users/zahirahkargbo/Desktop/movie.mp4 > select /A:9-310 2430 atoms, 2491 bonds, 302 residues, 1 model selected > color sel red > select /B:9-310 2430 atoms, 2491 bonds, 302 residues, 1 model selected > color sel blue > movie record > rock y 2 180 cycle 30 > wait 180 > movie encode Movie saved to /Users/zahirahkargbo/Desktop/movie.mp4 > close > open 2I3C format mmcif fromDatabase pdb 2i3c title: Crystal Structure of an Aspartoacylase from Homo Sapiens [more info...] Chain information for 2i3c #1 --- Chain | Description | UniProt A B | Aspartoacylase | ACY2_HUMAN Non-standard residues in 2i3c #1 --- PO4 — phosphate ion ZN — zinc ion > turn y 1 90 > ui tool show ""Side View"" > select protein 4860 atoms, 4982 bonds, 604 residues, 1 model selected > select /A 2465 atoms, 2507 bonds, 5 pseudobonds, 321 residues, 2 models selected > select main 4860 atoms, 4982 bonds, 604 residues, 1 model selected > select coil 1981 atoms, 1984 bonds, 252 residues, 1 model selected > select helix 1682 atoms, 1702 bonds, 202 residues, 1 model selected > select sideonly 2444 atoms, 1962 bonds, 568 residues, 1 model selected > open P45381 fromDatabase uniprot Summary of feedback from opening P45381 fetched from uniprot --- notes | Fetching compressed P45381 UniProt info from https://www.uniprot.org/uniprot/P45381.xml Alignment identifier is P45381 Associated 2i3c chain A to P45381 with 1 mismatch Associated 2i3c chain B to P45381 with 1 mismatch Opened UniProt P45381 > select /A-B:178 18 atoms, 16 bonds, 2 residues, 1 model selected > select /A-B:9-310 4860 atoms, 4982 bonds, 604 residues, 1 model selected ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.5 (2022-11-24) © 2016-2022 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 INTEL-18.2.10 OpenGL renderer: Intel(R) UHD Graphics 617 OpenGL vendor: Intel Inc. Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.3.1, Qt 6.3.1 Qt runtime version: 6.3.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Air Model Identifier: MacBookAir8,2 Processor Name: Dual-Core Intel Core i5 Processor Speed: 1.6 GHz Number of Processors: 1 Total Number of Cores: 2 L2 Cache (per Core): 256 KB L3 Cache: 4 MB Hyper-Threading Technology: Enabled Memory: 8 GB System Firmware Version: 1715.40.15.0.0 (iBridge: 19.16.10548.0.0,0) OS Loader Version: 540.40.4~45 Software: System Software Overview: System Version: macOS 12.0.1 (21A559) Kernel Version: Darwin 21.1.0 Time since boot: 9 days 11:11 Graphics/Displays: Intel UHD Graphics 617: Chipset Model: Intel UHD Graphics 617 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x87c0 Revision ID: 0x0002 Metal Family: Supported, Metal GPUFamily macOS 2 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Framebuffer Depth: 24-Bit Color (ARGB8888) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.1.0 Babel: 2.11.0 backcall: 0.2.0 blockdiag: 3.0.0 build: 0.8.0 certifi: 2021.10.8 cftime: 1.6.2 charset-normalizer: 2.1.1 ChimeraX-AddCharge: 1.4 ChimeraX-AddH: 2.2.1 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2.1 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.6 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.41.5 ChimeraX-AtomicLibrary: 8.0.3 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.7.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.1 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.2 ChimeraX-CommandLine: 1.2.4 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.5 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.1 ChimeraX-DistMonitor: 1.3 ChimeraX-DockPrep: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.2 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.2 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.1 ChimeraX-MatchMaker: 2.0.9 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.8 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.6 ChimeraX-ModelPanel: 1.3.6 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.1 ChimeraX-MouseModes: 1.1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.9.1 ChimeraX-PDB: 2.6.8 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.7.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.1.3 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.24.3 ChimeraX-uniprot: 2.2.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.1.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.1 ChimeraX-WebServices: 1.1.0 ChimeraX-Zone: 1.0.1 colorama: 0.4.5 cxservices: 1.2 cycler: 0.11.0 Cython: 0.29.32 debugpy: 1.6.4 decorator: 5.1.1 docutils: 0.19 entrypoints: 0.4 executing: 1.2.0 filelock: 3.7.1 fonttools: 4.38.0 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.7.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.33 imagecodecs: 2022.7.31 imagesize: 1.4.1 importlib-metadata: 5.1.0 ipykernel: 6.15.3 ipython: 8.4.0 ipython-genutils: 0.2.0 jedi: 0.18.1 Jinja2: 3.1.2 jupyter-client: 7.3.4 jupyter-core: 5.1.0 kiwisolver: 1.4.4 line-profiler: 3.5.1 lxml: 4.9.1 lz4: 4.0.2 MarkupSafe: 2.1.1 matplotlib: 3.5.2 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.0 networkx: 2.8.5 numexpr: 2.8.4 numpy: 1.23.1 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.2.0 pip: 22.2.2 pkginfo: 1.8.3 platformdirs: 2.5.4 prompt-toolkit: 3.0.33 psutil: 5.9.1 ptyprocess: 0.7.0 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.12.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 PyQt6-commercial: 6.3.1 PyQt6-Qt6: 6.3.2 PyQt6-sip: 13.4.0 PyQt6-WebEngine-commercial: 6.3.1 PyQt6-WebEngine-Qt6: 6.3.2 python-dateutil: 2.8.2 pytz: 2022.6 pyzmq: 24.0.1 qtconsole: 5.3.1 QtPy: 2.3.0 RandomWords: 0.4.0 requests: 2.28.1 scipy: 1.9.0 setuptools: 65.1.1 setuptools-scm: 7.0.5 sfftk-rw: 0.7.2 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 5.1.1 sphinx-autodoc-typehints: 1.19.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 tables: 3.7.0 tifffile: 2022.7.31 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.2 traitlets: 5.3.0 typing-extensions: 4.4.0 urllib3: 1.26.13 wcwidth: 0.2.5 webcolors: 1.12 wheel: 0.37.1 wheel-filename: 1.4.1 zipp: 3.11.0 }}} " defect closed normal UI can't reproduce Tom Goddard all ChimeraX