id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 8600 Crash closing window while XMAS in use chimerax-bug-report@… Richard Scheltema "{{{ The following bug report has been submitted: Platform: macOS-10.16-x86_64-i386-64bit ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. 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""60da5e84ab0ca017dace9abf"", ""factorPackIds"" : { }, ""deploymentId"" : 240000008 }, { ""rolloutId"" : ""60f8ddccefea4203d95cbeef"", ""factorPackIds"" : { ""NETWORK_SERVICE_PROXY_CONFIG_UPDATE"" : ""6401414cc679dd6bc5828183"" }, ""deploymentId"" : 240000025 } ], ""experiments"" : [ ] } } ===== Log before crash start ===== UCSF ChimeraX version: 1.5 (2022-11-24) © 2016-2022 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/laura/Documents/RSC/Analyse_structurale/20220112_J622_head.mrc Opened 20220112_J622_head.mrc as #1, grid size 450,450,450, pixel 0.84, shown at level 0.0471, step 2, values float32 > volume #1 step 1 > volume #1 level 0.1816 > open /Users/laura/Documents/RSC/Analyse_structurale/mask42_Carlo.pdb Chain information for mask42_Carlo.pdb #2 --- Chain | Description 1 | No description available 2 | No description available A | No description available B | No description available D | No description available F | No description available G | No description available H | No description available K | No description available W | No description available X | No description available > ui tool show XMAS Peptide pair mapping of Xi evidence file: /Users/laura/Downloads/RSC_BS3_msconvert_Xi1.7.6.7_PeptidePairs_xiFDR2.1.5.5.csv Unique peptide pairs: 1198 out of 1211 Unique peptide pairs with pseudobonds: 21 Pseudobonds are stored in /Users/laura/Downloads/RSC_BS3_msconvert_Xi1.7.6.7_PeptidePairs_xiFDR2.1.5.5_2.pb Mapping information is stored in /Users/laura/Downloads/RSC_BS3_msconvert_Xi1.7.6.7_PeptidePairs_xiFDR2.1.5.5_2.tsv > hide #!2 models > hide #!1 models > show #!2 models > show #!1 models > hide #!1 models > style stick Changed 8496 atom styles > open > /Users/laura/Documents/RSC/Science4/CaRSC_Structure/model_CA_core_wofoot_3.pdb Chain information for model_CA_core_wofoot_3.pdb #4 --- Chain | Description A | No description available E | No description available J | No description available Peptide pair mapping of Xi evidence file: /Users/laura/Downloads/RSC_BS3_msconvert_Xi1.7.6.7_PeptidePairs_xiFDR2.1.5.5.csv Unique peptide pairs: 1198 out of 1211 Unique peptide pairs with pseudobonds: 51 Pseudobonds are stored in /Users/laura/Downloads/RSC_BS3_msconvert_Xi1.7.6.7_PeptidePairs_xiFDR2.1.5.5_2,4.pb Mapping information is stored in /Users/laura/Downloads/RSC_BS3_msconvert_Xi1.7.6.7_PeptidePairs_xiFDR2.1.5.5_2,4.tsv > open > /Users/laura/Documents/RSC/Analyse_structurale/cryosparc_P197_J456_006_volume_map_sharp.mrc Opened cryosparc_P197_J456_006_volume_map_sharp.mrc as #6, grid size 450,450,450, pixel 0.84, shown at level 0.102, step 2, values float32 > show #!1 models > hide #!1 models > hide #3 models > select subtract #3 Nothing selected > hide #5 models > volume #6 step 1 > surface dust #6 size 8.4 > volume #6 level 0.2521 > hide #!2 models > fitmap #4 inMap #6 Fit molecule model_CA_core_wofoot_3.pdb (#4) to map cryosparc_P197_J456_006_volume_map_sharp.mrc (#6) using 5169 atoms average map value = 0.03277, steps = 220 shifted from previous position = 9.96 rotated from previous position = 14 degrees atoms outside contour = 5168, contour level = 0.25211 Position of model_CA_core_wofoot_3.pdb (#4) relative to cryosparc_P197_J456_006_volume_map_sharp.mrc (#6) coordinates: Matrix rotation and translation 0.97040927 0.22668597 0.08318250 -66.40857136 -0.22835857 0.97351438 0.01105071 48.30755244 -0.07847432 -0.02971915 0.99647306 21.75662245 Axis -0.08412676 0.33357147 -0.93896366 Axis point 173.14021730 315.08303197 0.00000000 Rotation angle (degrees) 14.02304332 Shift along axis 1.27208137 > volume #6 color #ffffb299 > select add #4 5169 atoms, 5254 bonds, 20 pseudobonds, 634 residues, 3 models selected > select add #5 5169 atoms, 5254 bonds, 41 pseudobonds, 634 residues, 3 models selected > select subtract #5 5169 atoms, 5254 bonds, 4 pseudobonds, 634 residues, 2 models selected > ui mousemode right ""rotate selected models"" > ui mousemode right ""translate selected models"" > view matrix models > #4,0.97041,0.22669,0.083182,-63.886,-0.22836,0.97351,0.011051,73.451,-0.078474,-0.029719,0.99647,19.145 > view matrix models > #4,-0.032113,0.71419,0.69922,-123.56,-0.49492,-0.61915,0.60968,340.54,0.86834,-0.32648,0.37335,48.613 > view matrix models > #4,-0.35828,0.70096,0.61667,-50.124,-0.31795,-0.71265,0.62533,328.04,0.8778,0.027971,0.4782,-49.671 > view matrix models > #4,-0.17179,0.070969,0.98257,-18.597,-0.18783,-0.98147,0.03805,480.27,0.96706,-0.17802,0.18194,38.278 > view matrix models > #4,-0.17179,0.070969,0.98257,-28.128,-0.18783,-0.98147,0.03805,458.48,0.96706,-0.17802,0.18194,33.723 > fitmap #4 inMap #6 Fit molecule model_CA_core_wofoot_3.pdb (#4) to map cryosparc_P197_J456_006_volume_map_sharp.mrc (#6) using 5169 atoms average map value = 0.04199, steps = 80 shifted from previous position = 5.15 rotated from previous position = 4.85 degrees atoms outside contour = 4983, contour level = 0.25211 Position of model_CA_core_wofoot_3.pdb (#4) relative to cryosparc_P197_J456_006_volume_map_sharp.mrc (#6) coordinates: Matrix rotation and translation -0.24013779 0.02887201 0.97030936 -0.71513498 -0.15411908 -0.98801359 -0.00874348 465.21482550 0.95842639 -0.15164283 0.24170913 15.79636696 Axis -0.61467249 0.05111382 -0.78712458 Axis point 10.68615808 232.87844790 0.00000000 Rotation angle (degrees) 173.32483498 Shift along axis 11.78477194 > view matrix models > #4,-0.24014,0.028872,0.97031,-26.948,-0.15412,-0.98801,-0.0087435,405.9,0.95843,-0.15164,0.24171,-16.78 > view matrix models > #4,-0.056898,0.47313,0.87916,-134.57,-0.82474,-0.51853,0.22568,370.44,0.56264,-0.71224,0.41971,133.94 > view matrix models > #4,-0.056898,0.47313,0.87916,-117.1,-0.82474,-0.51853,0.22568,414.82,0.56264,-0.71224,0.41971,155.84 > view matrix models > #4,-0.056898,0.47313,0.87916,-113.82,-0.82474,-0.51853,0.22568,403.75,0.56264,-0.71224,0.41971,139.92 > view matrix models > #4,-0.048394,0.59881,0.79943,-107.71,-0.86536,-0.42483,0.26583,395.23,0.49881,-0.67893,0.53874,127.02 > view matrix models > #4,0.054234,-0.39041,0.91904,63.361,-0.26476,-0.89307,-0.36376,520.45,0.96279,-0.2236,-0.1518,88.694 > view matrix models > #4,0.054234,-0.39041,0.91904,69.502,-0.26476,-0.89307,-0.36376,511.71,0.96279,-0.2236,-0.1518,79.616 > view matrix models > #4,0.054234,-0.39041,0.91904,74.714,-0.26476,-0.89307,-0.36376,522.49,0.96279,-0.2236,-0.1518,79.773 > view matrix models > #4,0.054234,-0.39041,0.91904,76.995,-0.26476,-0.89307,-0.36376,524.66,0.96279,-0.2236,-0.1518,80.537 > fitmap #4 inMap #6 Fit molecule model_CA_core_wofoot_3.pdb (#4) to map cryosparc_P197_J456_006_volume_map_sharp.mrc (#6) using 5169 atoms average map value = 0.1533, steps = 152 shifted from previous position = 4.4 rotated from previous position = 14.2 degrees atoms outside contour = 3650, contour level = 0.25211 Position of model_CA_core_wofoot_3.pdb (#4) relative to cryosparc_P197_J456_006_volume_map_sharp.mrc (#6) coordinates: Matrix rotation and translation 0.04090101 -0.18184759 0.98247573 19.43869326 -0.36638736 -0.91753314 -0.15457438 500.42607919 0.92956302 -0.35364444 -0.10415469 104.06348707 Axis -0.71981662 0.19132685 -0.66727661 Axis point -0.00000000 258.21477003 18.98628349 Rotation angle (degrees) 172.05176798 Shift along axis 12.31352141 > hide #!6 models > show #!2 models > show #3 models > show #5 models > style sel stick Changed 5169 atom styles > show sel atoms > hide sel cartoons > color sel bychain > set bgColor white > color #3 black models > color #5 black models > select subtract #4 Nothing selected > open > /Users/laura/Documents/RSC/Analyse_structurale/J456_J622_6v8o_adjusted2.cxs Opened cryosparc_P197_J622_007_volume_map(2).mrc copy as #7, grid size 450,450,450, pixel 0.84, shown at level 0.18, step 1, values float32 Opened cryosparc_P197_J456_006_volume_map.mrc copy as #6, grid size 450,450,450, pixel 0.84, shown at level 0.15, step 1, values float32 Opened J700_labilehead_arm.mrc as #1, grid size 450,450,450, pixel 0.84, shown at level 0.2, step 1, values float32 Opened cryosparc_P197_J610_006_volume_map_sharp.mrc as #8, grid size 450,450,450, pixel 0.84, shown at level 0.206, step 1, values float32 > set bgColor transparent opened ChimeraX session > open > /Users/laura/Documents/RSC/Science4/CaRSC_Structure/refinement/20230203_DB_compilation.pdb Chain information for 20230203_DB_compilation.pdb #10 --- Chain | Description E | No description available J | No description available K | No description available M | No description available > open > /Users/laura/Documents/RSC/Science4/CaRSC_Structure/refinement/20230208_HBLobe_job121.pdb Chain information for 20230208_HBLobe_job121.pdb #11 --- Chain | Description A | No description available D | No description available F | No description available G | No description available H | No description available U | No description available > show #!9 models > style #!9-11 stick Changed 18250 atom styles > hide #!9-11 atoms > show #!9-11 cartoons > hide #!6 models > hide #!7 models > hide #!10 models > show #!10 models > hide #!1 models > hide #!9-11 cartoons > style #!9-11 stick Changed 18250 atom styles > style #!9-11 stick Changed 18250 atom styles > show #!9-11 atoms > color #!9-11 bychain Peptide pair mapping of Xi evidence file: /Users/laura/Downloads/RSC_BS3_msconvert_Xi1.7.6.7_PeptidePairs_xiFDR2.1.5.5.csv Unique peptide pairs: 1198 out of 1211 Unique peptide pairs with pseudobonds: 109 Pseudobonds are stored in /Users/laura/Downloads/RSC_BS3_msconvert_Xi1.7.6.7_PeptidePairs_xiFDR2.1.5.5_3,4,5,2,9,10,11.pb Mapping information is stored in /Users/laura/Downloads/RSC_BS3_msconvert_Xi1.7.6.7_PeptidePairs_xiFDR2.1.5.5_3,4,5,2,9,10,11.tsv > select subtract #12 Nothing selected > color #11 #919191ff > color #9 #797979ff > color #10 #797979ff > color #9 #fffb00ff > undo > set bgColor white > set bgColor #ffffff00 > color #9 #424242ff > color #11 #424242ff > color #10 #424242ff > ui mousemode right ""tape measure"" > ui mousemode right distance > distance #10/J:474@N #10/J:465@CA Distance between 20230203_DB_compilation.pdb #10/J LYS 474 N and TYR 465 CA: 13.941Å > ui mousemode right translate > undo > hide #12 models > show #12 models > color #11 #424242ff > color #10 #424242ff > color #9 #424242ff > hide #13 models > show #13 models > hide #!14 models > show #!14 models > close #12 Peptide pair mapping of Xi evidence file: /Users/laura/Downloads/RSC_BS3_msconvert_Xi1.7.6.7_PeptidePairs_xiFDR2.1.5.5.csv Unique peptide pairs: 1198 out of 1211 Unique peptide pairs with pseudobonds: 109 Pseudobonds are stored in /Users/laura/Downloads/RSC_BS3_msconvert_Xi1.7.6.7_PeptidePairs_xiFDR2.1.5.5_3,4,5,2,9,10,11.pb Mapping information is stored in /Users/laura/Downloads/RSC_BS3_msconvert_Xi1.7.6.7_PeptidePairs_xiFDR2.1.5.5_3,4,5,2,9,10,11.tsv ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.5 (2022-11-24) © 2016-2022 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 ATI-4.8.101 OpenGL renderer: AMD Radeon Pro 5500M OpenGL Engine OpenGL vendor: ATI Technologies Inc. Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.3.1, Qt 6.3.1 Qt runtime version: 6.3.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro16,1 Processor Name: 8-Core Intel Core i9 Processor Speed: 2,3 GHz Number of Processors: 1 Total Number of Cores: 8 L2 Cache (per Core): 256 KB L3 Cache: 16 MB Hyper-Threading Technology: Enabled Memory: 32 GB System Firmware Version: 1916.60.2.0.0 (iBridge: 20.16.2059.0.0,0) OS Loader Version: 540.120.3~22 Software: System Software Overview: System Version: macOS 12.6.2 (21G320) Kernel Version: Darwin 21.6.0 Time since boot: 1 day 12:58 Graphics/Displays: Intel UHD Graphics 630: Chipset Model: Intel UHD Graphics 630 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x3e9b Revision ID: 0x0002 Automatic Graphics Switching: Supported gMux Version: 5.0.0 Metal Family: Supported, Metal GPUFamily macOS 2 AMD Radeon Pro 5500M: Chipset Model: AMD Radeon Pro 5500M Type: GPU Bus: PCIe PCIe Lane Width: x16 VRAM (Total): 8 GB Vendor: AMD (0x1002) Device ID: 0x7340 Revision ID: 0x0040 ROM Revision: 113-D3220E-190 VBIOS Version: 113-D32206U1-019 Option ROM Version: 113-D32206U1-019 EFI Driver Version: 01.A1.190 Automatic Graphics Switching: Supported gMux Version: 5.0.0 Metal Family: Supported, Metal GPUFamily macOS 2 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 3072 x 1920 Retina Framebuffer Depth: 24-Bit Color (ARGB8888) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.1.0 Babel: 2.11.0 backcall: 0.2.0 blockdiag: 3.0.0 build: 0.8.0 certifi: 2021.10.8 cftime: 1.6.2 charset-normalizer: 2.1.1 ChimeraX-AddCharge: 1.4 ChimeraX-AddH: 2.2.1 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2.1 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.6 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.41.5 ChimeraX-AtomicLibrary: 8.0.3 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.7.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.1 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.2 ChimeraX-CommandLine: 1.2.4 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.5 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.1 ChimeraX-DistMonitor: 1.3 ChimeraX-DockPrep: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.2 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.2 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.1 ChimeraX-MatchMaker: 2.0.9 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.8 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.6 ChimeraX-ModelPanel: 1.3.6 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.1 ChimeraX-MouseModes: 1.1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.9.1 ChimeraX-PDB: 2.6.8 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.7.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.1.3 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.24.3 ChimeraX-uniprot: 2.2.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.1.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.1 ChimeraX-WebServices: 1.1.0 ChimeraX-XMAS: 1.1.2 ChimeraX-Zone: 1.0.1 colorama: 0.4.5 cxservices: 1.2 cycler: 0.11.0 Cython: 0.29.32 debugpy: 1.6.4 decorator: 5.1.1 docutils: 0.19 entrypoints: 0.4 et-xmlfile: 1.1.0 executing: 1.2.0 filelock: 3.7.1 fonttools: 4.38.0 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.7.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.33 imagecodecs: 2022.7.31 imagesize: 1.4.1 importlib-metadata: 5.1.0 ipykernel: 6.15.3 ipython: 8.4.0 ipython-genutils: 0.2.0 jedi: 0.18.1 Jinja2: 3.1.2 jupyter-client: 7.3.4 jupyter-core: 5.1.0 kiwisolver: 1.4.4 line-profiler: 3.5.1 lxml: 4.9.1 lz4: 4.0.2 MarkupSafe: 2.1.1 matplotlib: 3.5.2 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.0 networkx: 2.8.5 numexpr: 2.8.4 numpy: 1.23.1 openpyxl: 3.1.0 openvr: 1.23.701 packaging: 21.3 pandas: 1.5.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.2.0 pip: 22.2.2 pkginfo: 1.8.3 platformdirs: 2.5.4 prompt-toolkit: 3.0.33 psutil: 5.9.1 ptyprocess: 0.7.0 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.12.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 PyQt6-commercial: 6.3.1 PyQt6-Qt6: 6.3.2 PyQt6-sip: 13.4.0 PyQt6-WebEngine-commercial: 6.3.1 PyQt6-WebEngine-Qt6: 6.3.2 python-dateutil: 2.8.2 pytz: 2022.6 pyzmq: 24.0.1 qtconsole: 5.3.1 QtPy: 2.3.0 QtRangeSlider: 0.1.5 RandomWords: 0.4.0 requests: 2.28.1 scipy: 1.9.0 seaborn: 0.12.2 setuptools: 65.1.1 setuptools-scm: 7.0.5 sfftk-rw: 0.7.2 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 5.1.1 sphinx-autodoc-typehints: 1.19.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 tables: 3.7.0 tifffile: 2022.7.31 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.2 traitlets: 5.3.0 typing-extensions: 4.4.0 urllib3: 1.26.13 wcwidth: 0.2.5 webcolors: 1.12 wheel: 0.37.1 wheel-filename: 1.4.1 zipp: 3.11.0 }}} " defect closed normal Third Party duplicate all ChimeraX