id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 8591 Crash in garbage collection from timer after structure closed ppratap@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-10.16-x86_64-i386-64bit ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. 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""x86_64"", ""base"" : 140703450132480, ""size"" : 609392, ""uuid"" : ""bb7a0970-8c62-3dce-a7a2-5cec9c501f11"", ""path"" : ""\/usr\/lib\/dyld"", ""name"" : ""dyld"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4572893184, ""size"" : 64028672, ""uuid"" : ""24c9d5c5-4854-3af4-9550-cb0204044dfa"", ""path"" : ""\/Applications\/ChimeraX-1.5.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib"", ""name"" : ""libopenblas64_.0.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 5152432128, ""size"" : 165052416, ""uuid"" : ""4aa1de3e-464c-340c-ab61-bcd39bfc7658"", ""path"" : ""\/Applications\/ChimeraX-1.5.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineCore.framework\/Versions\/A\/QtWebEngineCore"", ""name"" : ""QtWebEngineCore"" } ], ""vmSummary"" : ""ReadOnly portion of Libraries: Total=1.1G resident=0K(0%) swapped_out_or_unallocated=1.1G(100%)\nWritable regions: Total=1.2G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.2G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 256K 2 \nActivity Tracing 256K 1 \nCG backing stores 5408K 8 \nCG image 196K 21 \nColorSync 248K 29 \nCoreAnimation 80K 12 \nCoreGraphics 24K 4 \nCoreUI image data 3736K 28 \nFoundation 36K 2 \nKernel Alloc Once 8K 1 \nMALLOC 829.0M 691 \nMALLOC guard page 32K 7 \nMALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)\nMach message 16K 4 \nOpenGL GLSL 384K 4 \nSTACK GUARD 116K 29 \nStack 173.2M 30 \nStack Guard 56.0M 1 \nVM_ALLOCATE 126.8M 157 \nVM_ALLOCATE (reserved) 96.0M 1 reserved VM address space (unallocated)\n__CTF 756 1 \n__DATA 47.1M 742 \n__DATA_CONST 53.4M 392 \n__DATA_DIRTY 1823K 226 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__LINKEDIT 211.8M 133 \n__OBJC_RO 65.4M 1 \n__OBJC_RW 1988K 2 \n__TEXT 911.7M 747 \ndyld private memory 416K 3 \nmapped file 220.6M 59 \nshared memory 3512K 28 \n=========== ======= ======= \nTOTAL 2.7G 3369 \nTOTAL, minus reserved VM space 2.7G 3369 \n"", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""610d52e1fc54bc3389840408"", ""factorPackIds"" : { ""SIRI_UNDERSTANDING_ASR_ASSISTANT"" : ""63619607c8a2104545a570c7"", ""SIRI_UNDERSTANDING_MORPHUN"" : ""62ec7220c682040ba94e6a20"" }, ""deploymentId"" : 240000625 }, { ""rolloutId"" : ""63582c5f8a53461413999550"", ""factorPackIds"" : { }, ""deploymentId"" : 240000002 } ], ""experiments"" : [ ] }, ""reportNotes"" : [ ""dyld_process_snapshot_create_for_process failed with 5"" ] } ===== Log before crash start ===== UCSF ChimeraX version: 1.5 (2022-11-24) © 2016-2022 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/payalpratap/Desktop/Desktop > Folder/CryoEMPEM/32613_wk42/32613-IF3-coot-local-directory/IF3_Boost2_Fv- > coot-20.pdb"" Summary of feedback from opening /Users/payalpratap/Desktop/Desktop Folder/CryoEMPEM/32613_wk42/32613-IF3-coot-local-directory/IF3_Boost2_Fv- coot-20.pdb --- warnings | Start residue of secondary structure not found: HELIX 1 1 GLY B 13 GLY B 16 1 4 Start residue of secondary structure not found: HELIX 2 2 MET B 19 LEU B 34 1 16 Start residue of secondary structure not found: HELIX 3 3 GLN B 52 LYS B 56 1 5 Start residue of secondary structure not found: HELIX 4 4 THR B 58 TRP B 85 1 28 Start residue of secondary structure not found: HELIX 5 5 LEU B 108 TRP B 112 1 5 1 messages similar to the above omitted End residue of secondary structure not found: HELIX 7 7 VAL C 38 HIS C 42 1 5 Start residue of secondary structure not found: HELIX 8 8 ASN C 69 LEU C 86 1 18 Start residue of secondary structure not found: HELIX 9 9 THR C 93 LEU C 95 1 3 Start residue of secondary structure not found: HELIX 10 10 ARG C 140 ASP C 142 1 3 Start residue of secondary structure not found: HELIX 11 11 ILE C 164 CYS C 166 1 3 Start residue of secondary structure not found: HELIX 12 12 LYS C 304 PHE C 322 1 19 8 messages similar to the above omitted End residue of secondary structure not found: HELIX 21 21 VAL D 38 HIS D 42 1 5 Start residue of secondary structure not found: HELIX 22 22 ASN D 69 LEU D 86 1 18 Start residue of secondary structure not found: HELIX 23 23 THR D 93 LEU D 95 1 3 Start residue of secondary structure not found: HELIX 24 24 ARG D 140 ASP D 142 1 3 Start residue of secondary structure not found: HELIX 25 25 ILE D 164 CYS D 166 1 3 Start residue of secondary structure not found: HELIX 26 26 LYS D 304 PHE D 322 1 19 14 messages similar to the above omitted End residue of secondary structure not found: SHEET 7 7 7 LEU C 116 THR C 124 0 Start residue of secondary structure not found: SHEET 8 8 8 LYS C 131 TYR C 139 0 Start residue of secondary structure not found: SHEET 9 9 9 VAL C 143 GLN C 145 0 Start residue of secondary structure not found: SHEET 10 1010 TYR C 161 LEU C 163 0 Start residue of secondary structure not found: SHEET 11 1111 ALA C 170 GLN C 173 0 Start residue of secondary structure not found: SHEET 12 1212 HIS C 186 CYS C 188 0 26 messages similar to the above omitted End residue of secondary structure not found: SHEET 39 3939 LEU D 116 THR D 124 0 Start residue of secondary structure not found: SHEET 40 4040 LYS D 131 TYR D 139 0 Start residue of secondary structure not found: SHEET 41 4141 VAL D 143 GLN D 145 0 Start residue of secondary structure not found: SHEET 42 4242 TYR D 161 LEU D 163 0 Start residue of secondary structure not found: SHEET 43 4343 ALA D 170 GLN D 173 0 Start residue of secondary structure not found: SHEET 44 4444 HIS D 186 CYS D 188 0 20 messages similar to the above omitted End residue of secondary structure not found: SHEET 74 7474 ALA H 101 CYS H 104 0 Start residue of secondary structure not found: SHEET 75 7575 ALA H 124 ALA H 127 0 Start residue of secondary structure not found: SHEET 83 8383 ALA L 122 ALA L 125 0 Chain information for IF3_Boost2_Fv-coot-20.pdb #1 --- Chain | Description A C | No description available B E F | No description available D | No description available H | No description available L | No description available > show cartoons > style stick Changed 15937 atom styles > hide atoms > ui tool show ""Show Sequence Viewer"" > sequence chain /A /C Alignment identifier is 1 > select /A,C:66 20 atoms, 20 bonds, 2 residues, 1 model selected > select /A,C:66 20 atoms, 20 bonds, 2 residues, 1 model selected > show sel atoms > select /H:18 5 atoms, 4 bonds, 1 residue, 1 model selected > select /H:90 5 atoms, 4 bonds, 1 residue, 1 model selected > select up 30 atoms, 29 bonds, 6 residues, 1 model selected > select up 644 atoms, 651 bonds, 117 residues, 1 model selected > select add /L:41 649 atoms, 655 bonds, 118 residues, 1 model selected > select up 674 atoms, 680 bonds, 123 residues, 1 model selected > select up 1262 atoms, 1272 bonds, 236 residues, 1 model selected > select up 15937 atoms, 16235 bonds, 2097 residues, 1 model selected > select down 1262 atoms, 1272 bonds, 236 residues, 1 model selected > name frozen IF3 sel > select zone IF3 5 #1/A Selected 47 atoms > show sel atoms > select up 111 atoms, 108 bonds, 12 residues, 1 model selected > show sel atoms > open ""/Users/payalpratap/Desktop/Desktop > Folder/CryoEMPEM/32613_wk42/32613-N355-coot-local- > directory/Trimer_Fv_N355-coot-3.pdb"" Summary of feedback from opening /Users/payalpratap/Desktop/Desktop Folder/CryoEMPEM/32613_wk42/32613-N355-coot-local- directory/Trimer_Fv_N355-coot-3.pdb --- warnings | Start residue of secondary structure not found: SHEET 90 9090 TRP H 41 ALA H 44 0 End residue of secondary structure not found: SHEET 96 9696 ALA H 101 CYS H 104 0 Start residue of secondary structure not found: SHEET 97 9797 ALA H 124 ALA H 127 0 Start residue of secondary structure not found: SHEET 105 10510 ALA L 122 ALA L 125 0 Chain information for Trimer_Fv_N355-coot-3.pdb #2 --- Chain | Description A | No description available B | No description available C | No description available D | No description available E | No description available F | No description available H | No description available L | No description available > style sel stick Changed 111 atom styles > show sel cartoons > hide sel atoms > close #1 ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.5 (2022-11-24) © 2016-2022 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/payalpratap/Desktop/Desktop > Folder/CryoEMPEM/32613_wk42/32613-N355-coot-local- > directory/Trimer_Fv_N355-coot-3.pdb"" Summary of feedback from opening /Users/payalpratap/Desktop/Desktop Folder/CryoEMPEM/32613_wk42/32613-N355-coot-local- directory/Trimer_Fv_N355-coot-3.pdb --- warnings | Start residue of secondary structure not found: SHEET 90 9090 TRP H 41 ALA H 44 0 End residue of secondary structure not found: SHEET 96 9696 ALA H 101 CYS H 104 0 Start residue of secondary structure not found: SHEET 97 9797 ALA H 124 ALA H 127 0 Start residue of secondary structure not found: SHEET 105 10510 ALA L 122 ALA L 125 0 Chain information for Trimer_Fv_N355-coot-3.pdb #1 --- Chain | Description A | No description available B | No description available C | No description available D | No description available E | No description available F | No description available H | No description available L | No description available Failed to send bug report. Bug report server www.rbvi.ucsf.edu is unavailable OpenGL version: 4.1 ATI-4.9.51 OpenGL renderer: AMD Radeon Pro 555X OpenGL Engine OpenGL vendor: ATI Technologies Inc. Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.3.1, Qt 6.3.1 Qt runtime version: 6.3.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro15,1 Processor Name: 6-Core Intel Core i7 Processor Speed: 2.2 GHz Number of Processors: 1 Total Number of Cores: 6 L2 Cache (per Core): 256 KB L3 Cache: 9 MB Hyper-Threading Technology: Enabled Memory: 16 GB System Firmware Version: 1916.60.2.0.0 (iBridge: 20.16.2059.0.0,0) OS Loader Version: 564.40.4~55 Software: System Software Overview: System Version: macOS 13.1 (22C65) Kernel Version: Darwin 22.2.0 Time since boot: 19 hours, 41 minutes Graphics/Displays: Intel UHD Graphics 630: Chipset Model: Intel UHD Graphics 630 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x3e9b Revision ID: 0x0000 Automatic Graphics Switching: Supported gMux Version: 5.0.0 Metal Support: Metal 3 Radeon Pro 555X: Chipset Model: Radeon Pro 555X Type: GPU Bus: PCIe PCIe Lane Width: x8 VRAM (Total): 4 GB Vendor: AMD (0x1002) Device ID: 0x67ef Revision ID: 0x00e3 ROM Revision: 113-C980AL-075 VBIOS Version: 113-C97501P-005 EFI Driver Version: 01.A1.075 Automatic Graphics Switching: Supported gMux Version: 5.0.0 Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2880 x 1800 Retina Framebuffer Depth: 30-Bit Color (ARGB2101010) Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal LG Ultra HD: Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition) UI Looks like: 1920 x 1080 @ 60.00Hz Framebuffer Depth: 30-Bit Color (ARGB2101010) Main Display: Yes Mirror: Off Online: Yes Rotation: Supported Connection Type: Thunderbolt/DisplayPort Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.1.0 Babel: 2.11.0 backcall: 0.2.0 blockdiag: 3.0.0 build: 0.8.0 certifi: 2021.10.8 cftime: 1.6.2 charset-normalizer: 2.1.1 ChimeraX-AddCharge: 1.4 ChimeraX-AddH: 2.2.1 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2.1 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.6 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.41.5 ChimeraX-AtomicLibrary: 8.0.3 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.7.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.1 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.2 ChimeraX-CommandLine: 1.2.4 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.5 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.1 ChimeraX-DistMonitor: 1.3 ChimeraX-DockPrep: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.2 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.2 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.1 ChimeraX-MatchMaker: 2.0.9 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.8 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.6 ChimeraX-ModelPanel: 1.3.6 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.1 ChimeraX-MouseModes: 1.1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.9.1 ChimeraX-PDB: 2.6.8 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.7.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.1.3 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.24.3 ChimeraX-uniprot: 2.2.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.1.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.1 ChimeraX-WebServices: 1.1.0 ChimeraX-Zone: 1.0.1 colorama: 0.4.5 cxservices: 1.2 cycler: 0.11.0 Cython: 0.29.32 debugpy: 1.6.4 decorator: 5.1.1 docutils: 0.19 entrypoints: 0.4 executing: 1.2.0 filelock: 3.7.1 fonttools: 4.38.0 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.7.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.33 imagecodecs: 2022.7.31 imagesize: 1.4.1 importlib-metadata: 5.1.0 ipykernel: 6.15.3 ipython: 8.4.0 ipython-genutils: 0.2.0 jedi: 0.18.1 Jinja2: 3.1.2 jupyter-client: 7.3.4 jupyter-core: 5.1.0 kiwisolver: 1.4.4 line-profiler: 3.5.1 lxml: 4.9.1 lz4: 4.0.2 MarkupSafe: 2.1.1 matplotlib: 3.5.2 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.0 networkx: 2.8.5 numexpr: 2.8.4 numpy: 1.23.1 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.2.0 pip: 22.2.2 pkginfo: 1.8.3 platformdirs: 2.5.4 prompt-toolkit: 3.0.33 psutil: 5.9.1 ptyprocess: 0.7.0 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.12.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 PyQt6-commercial: 6.3.1 PyQt6-Qt6: 6.3.2 PyQt6-sip: 13.4.0 PyQt6-WebEngine-commercial: 6.3.1 PyQt6-WebEngine-Qt6: 6.3.2 python-dateutil: 2.8.2 pytz: 2022.6 pyzmq: 24.0.1 qtconsole: 5.3.1 QtPy: 2.3.0 RandomWords: 0.4.0 requests: 2.28.1 scipy: 1.9.0 setuptools: 65.1.1 setuptools-scm: 7.0.5 sfftk-rw: 0.7.2 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 5.1.1 sphinx-autodoc-typehints: 1.19.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 tables: 3.7.0 tifffile: 2022.7.31 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.2 traitlets: 5.3.0 typing-extensions: 4.4.0 urllib3: 1.26.13 wcwidth: 0.2.5 webcolors: 1.12 wheel: 0.37.1 wheel-filename: 1.4.1 zipp: 3.11.0 }}} " defect closed normal Core fixed Tom Goddard all ChimeraX