id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 8562 QQuickWidget: Failed to make context current when creating FBO lochuynh@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-10.16-x86_64-i386-64bit ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Current thread 0x000000020131be00 (most recent call first): File ""/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py"", line 283 in event_loop File ""/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 884 in init File ""/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 1035 in File ""/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 87 in _run_code File ""/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 197 in _run_module_as_main Process: ChimeraX [47815] Path: /Applications/ChimeraX-1.5.app/Contents/MacOS/ChimeraX Identifier: edu.ucsf.cgl.ChimeraX Version: 1.5.0 (1.5.0.0) Code Type: X86-64 (Translated) Parent Process: ??? [1] Responsible: ChimeraX [47815] User ID: 501 Date/Time: 2023-02-24 14:53:13.199 -0500 OS Version: macOS 11.7.3 (20G1116) Report Version: 12 Anonymous UUID: C238F01D-9DEB-7541-57C9-DA5B77559D9C Sleep/Wake UUID: FD33A8D2-0519-43C4-90F5-F29E899196FD Time Awake Since Boot: 1300000 seconds System Integrity Protection: enabled Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread Exception Type: EXC_BAD_ACCESS (SIGSEGV) Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000008 Exception Note: EXC_CORPSE_NOTIFY VM Regions Near 0x8: --> __TEXT 100eb7000-100eb8000 [ 4K] r-x/r-x SM=COW /Applications/ChimeraX-1.5.app/Contents/MacOS/ChimeraX Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread 0 ??? 0x00007ffe949268f4 ??? 1 libsystem_kernel.dylib 0x00007fff2050f91e __pthread_kill + 10 2 libsystem_c.dylib 0x00007fff20422bd5 raise + 26 3 libsystem_platform.dylib 0x00007fff20583d7d _sigtramp + 29 4 ??? 000000000000000000 0 + 0 5 ??? 000000000000000000 0 + 0 6 ??? 0x00000001000000d8 0 + 4294967512 7 QtCore 0x0000000122accb30 QEvent::~QEvent() + 48 8 ??? 0xffff878948004915 0 + 18446611622421088533 Thread 1:: com.apple.rosetta.exceptionserver 0 runtime 0x00007ffdffdcaa28 0x7ffdffdc6000 + 18984 1 runtime 0x00007ffdffdcfeec 0x7ffdffdc6000 + 40684 2 runtime 0x00007ffdffdd12c0 0x7ffdffdc6000 + 45760 Thread 2: 0 ??? 0x00007ffe949268f4 ??? 1 libsystem_kernel.dylib 0x00007fff2050bcce __psynch_cvwait + 10 2 libopenblas64_.0.dylib 0x000000010af0023f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff2053e8fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff2053a443 thread_start + 15 Thread 3: 0 ??? 0x00007ffe949268f4 ??? 1 libsystem_kernel.dylib 0x00007fff2050bcce __psynch_cvwait + 10 2 libopenblas64_.0.dylib 0x000000010af0023f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff2053e8fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff2053a443 thread_start + 15 Thread 4: 0 ??? 0x00007ffe949268f4 ??? 1 libsystem_kernel.dylib 0x00007fff2050bcce __psynch_cvwait + 10 2 libopenblas64_.0.dylib 0x000000010af0023f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff2053e8fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff2053a443 thread_start + 15 Thread 5: 0 ??? 0x00007ffe949268f4 ??? 1 libsystem_kernel.dylib 0x00007fff2050bcce __psynch_cvwait + 10 2 libopenblas64_.0.dylib 0x000000010af0023f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff2053e8fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff2053a443 thread_start + 15 Thread 6: 0 ??? 0x00007ffe949268f4 ??? 1 libsystem_kernel.dylib 0x00007fff2050bcce __psynch_cvwait + 10 2 libopenblas64_.0.dylib 0x000000010af0023f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff2053e8fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff2053a443 thread_start + 15 Thread 7: 0 ??? 0x00007ffe949268f4 ??? 1 libsystem_kernel.dylib 0x00007fff2050bcce __psynch_cvwait + 10 2 libopenblas64_.0.dylib 0x000000010af0023f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff2053e8fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff2053a443 thread_start + 15 Thread 8: 0 ??? 0x00007ffe949268f4 ??? 1 libsystem_kernel.dylib 0x00007fff2050bcce __psynch_cvwait + 10 2 libopenblas64_.0.dylib 0x000000010af0023f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff2053e8fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff2053a443 thread_start + 15 Thread 9:: ThreadPoolServiceThread 0 ??? 0x00007ffe949268f4 ??? 1 libsystem_kernel.dylib 0x00007fff205121c2 kevent64 + 10 2 QtWebEngineCore 0x000000012ce99927 0x128f39000 + 66455847 3 QtWebEngineCore 0x000000012ce16a5c 0x128f39000 + 65919580 4 QtWebEngineCore 0x000000012cdce998 0x128f39000 + 65624472 5 QtWebEngineCore 0x000000012ce38eb8 0x128f39000 + 66059960 6 QtWebEngineCore 0x000000012ce202ad 0x128f39000 + 65958573 7 QtWebEngineCore 0x000000012ce3904a 0x128f39000 + 66060362 8 QtWebEngineCore 0x000000012ce60908 0x128f39000 + 66222344 9 libsystem_pthread.dylib 0x00007fff2053e8fc _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff2053a443 thread_start + 15 Thread 10:: Chrome_IOThread 0 ??? 0x00007ffe949268f4 ??? 1 libsystem_kernel.dylib 0x00007fff205121c2 kevent64 + 10 2 QtWebEngineCore 0x000000012ce99927 0x128f39000 + 66455847 3 QtWebEngineCore 0x000000012ce16a5c 0x128f39000 + 65919580 4 QtWebEngineCore 0x000000012cdce998 0x128f39000 + 65624472 5 QtWebEngineCore 0x000000012ce38eb8 0x128f39000 + 66059960 6 QtWebEngineCore 0x000000012bd5e3a2 0x128f39000 + 48386978 7 QtWebEngineCore 0x000000012ce3904a 0x128f39000 + 66060362 8 QtWebEngineCore 0x000000012ce60908 0x128f39000 + 66222344 9 libsystem_pthread.dylib 0x00007fff2053e8fc _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff2053a443 thread_start + 15 Thread 11:: NetworkConfigWatcher 0 ??? 0x00007ffe949268f4 ??? 1 libsystem_kernel.dylib 0x00007fff205092aa mach_msg_trap + 10 2 QtWebEngineCore 0x000000012ce67e26 0x128f39000 + 66252326 3 QtWebEngineCore 0x000000012ce67bef 0x128f39000 + 66251759 4 QtWebEngineCore 0x000000012cd9d1c9 0x128f39000 + 65421769 5 QtWebEngineCore 0x000000012ce16a5c 0x128f39000 + 65919580 6 QtWebEngineCore 0x000000012cdce998 0x128f39000 + 65624472 7 QtWebEngineCore 0x000000012ce38eb8 0x128f39000 + 66059960 8 QtWebEngineCore 0x000000012ce3904a 0x128f39000 + 66060362 9 QtWebEngineCore 0x000000012ce60908 0x128f39000 + 66222344 10 libsystem_pthread.dylib 0x00007fff2053e8fc _pthread_start + 224 11 libsystem_pthread.dylib 0x00007fff2053a443 thread_start + 15 Thread 12:: ThreadPoolForegroundWorker 0 ??? 0x00007ffe949268f4 ??? 1 libsystem_kernel.dylib 0x00007fff205092aa mach_msg_trap + 10 2 QtWebEngineCore 0x000000012ce67e26 0x128f39000 + 66252326 3 QtWebEngineCore 0x000000012ce2c7bf 0x128f39000 + 66009023 4 QtWebEngineCore 0x000000012ce2d26c 0x128f39000 + 66011756 5 QtWebEngineCore 0x000000012ce2ce6d 0x128f39000 + 66010733 6 QtWebEngineCore 0x000000012ce60908 0x128f39000 + 66222344 7 libsystem_pthread.dylib 0x00007fff2053e8fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff2053a443 thread_start + 15 Thread 13:: CompositorTileWorker1 0 ??? 0x00007ffe949268f4 ??? 1 libsystem_kernel.dylib 0x00007fff2050bcce __psynch_cvwait + 10 2 QtWebEngineCore 0x000000012ce5fd1b 0x128f39000 + 66219291 3 QtWebEngineCore 0x000000012ef2d92d 0x128f39000 + 100616493 4 QtWebEngineCore 0x000000012ce60908 0x128f39000 + 66222344 5 libsystem_pthread.dylib 0x00007fff2053e8fc _pthread_start + 224 6 libsystem_pthread.dylib 0x00007fff2053a443 thread_start + 15 Thread 14:: Chrome_InProcGpuThread 0 ??? 0x00007ffe949268f4 ??? 1 libsystem_kernel.dylib 0x00007fff205092aa mach_msg_trap + 10 2 QtWebEngineCore 0x000000012ce67e26 0x128f39000 + 66252326 3 QtWebEngineCore 0x000000012ce67bef 0x128f39000 + 66251759 4 QtWebEngineCore 0x000000012cd9d1c9 0x128f39000 + 65421769 5 QtWebEngineCore 0x000000012ce16a5c 0x128f39000 + 65919580 6 QtWebEngineCore 0x000000012cdce998 0x128f39000 + 65624472 7 QtWebEngineCore 0x000000012ce38eb8 0x128f39000 + 66059960 8 QtWebEngineCore 0x000000012ce3904a 0x128f39000 + 66060362 9 QtWebEngineCore 0x000000012ce60908 0x128f39000 + 66222344 10 libsystem_pthread.dylib 0x00007fff2053e8fc _pthread_start + 224 11 libsystem_pthread.dylib 0x00007fff2053a443 thread_start + 15 Thread 15:: Chrome_ChildIOThread 0 ??? 0x00007ffe949268f4 ??? 1 libsystem_kernel.dylib 0x00007fff205121c2 kevent64 + 10 2 QtWebEngineCore 0x000000012ce99927 0x128f39000 + 66455847 3 QtWebEngineCore 0x000000012ce16a5c 0x128f39000 + 65919580 4 QtWebEngineCore 0x000000012cdce998 0x128f39000 + 65624472 5 QtWebEngineCore 0x000000012ce38eb8 0x128f39000 + 66059960 6 QtWebEngineCore 0x000000012ce3904a 0x128f39000 + 66060362 7 QtWebEngineCore 0x000000012ce60908 0x128f39000 + 66222344 8 libsystem_pthread.dylib 0x00007fff2053e8fc _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff2053a443 thread_start + 15 Thread 16:: VizCompositorThread 0 ??? 0x00007ffe949268f4 ??? 1 libsystem_kernel.dylib 0x00007fff205092aa mach_msg_trap + 10 2 QtWebEngineCore 0x000000012ce67e26 0x128f39000 + 66252326 3 QtWebEngineCore 0x000000012cd9d168 0x128f39000 + 65421672 4 QtWebEngineCore 0x000000012ce16a5c 0x128f39000 + 65919580 5 QtWebEngineCore 0x000000012cdce998 0x128f39000 + 65624472 6 QtWebEngineCore 0x000000012ce38eb8 0x128f39000 + 66059960 7 QtWebEngineCore 0x000000012ce3904a 0x128f39000 + 66060362 8 QtWebEngineCore 0x000000012ce60908 0x128f39000 + 66222344 9 libsystem_pthread.dylib 0x00007fff2053e8fc _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff2053a443 thread_start + 15 Thread 17:: NetworkConfigWatcher 0 ??? 0x00007ffe949268f4 ??? 1 libsystem_kernel.dylib 0x00007fff205092aa mach_msg_trap + 10 2 QtWebEngineCore 0x000000012ce67e26 0x128f39000 + 66252326 3 QtWebEngineCore 0x000000012ce67bef 0x128f39000 + 66251759 4 QtWebEngineCore 0x000000012cd9d1c9 0x128f39000 + 65421769 5 QtWebEngineCore 0x000000012ce16a5c 0x128f39000 + 65919580 6 QtWebEngineCore 0x000000012cdce998 0x128f39000 + 65624472 7 QtWebEngineCore 0x000000012ce38eb8 0x128f39000 + 66059960 8 QtWebEngineCore 0x000000012ce3904a 0x128f39000 + 66060362 9 QtWebEngineCore 0x000000012ce60908 0x128f39000 + 66222344 10 libsystem_pthread.dylib 0x00007fff2053e8fc _pthread_start + 224 11 libsystem_pthread.dylib 0x00007fff2053a443 thread_start + 15 Thread 18:: NetworkService 0 ??? 0x00007ffe949268f4 ??? 1 libsystem_kernel.dylib 0x00007fff205121c2 kevent64 + 10 2 QtWebEngineCore 0x000000012ce99927 0x128f39000 + 66455847 3 QtWebEngineCore 0x000000012ce16a5c 0x128f39000 + 65919580 4 QtWebEngineCore 0x000000012cdce998 0x128f39000 + 65624472 5 QtWebEngineCore 0x000000012ce38eb8 0x128f39000 + 66059960 6 QtWebEngineCore 0x000000012ce3904a 0x128f39000 + 66060362 7 QtWebEngineCore 0x000000012ce60908 0x128f39000 + 66222344 8 libsystem_pthread.dylib 0x00007fff2053e8fc _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff2053a443 thread_start + 15 Thread 19:: NetworkConfigWatcher 0 ??? 0x00007ffe949268f4 ??? 1 libsystem_kernel.dylib 0x00007fff205092aa mach_msg_trap + 10 2 QtWebEngineCore 0x000000012ce67e26 0x128f39000 + 66252326 3 QtWebEngineCore 0x000000012ce67bef 0x128f39000 + 66251759 4 QtWebEngineCore 0x000000012cd9d1c9 0x128f39000 + 65421769 5 QtWebEngineCore 0x000000012ce16a5c 0x128f39000 + 65919580 6 QtWebEngineCore 0x000000012cdce998 0x128f39000 + 65624472 7 QtWebEngineCore 0x000000012ce38eb8 0x128f39000 + 66059960 8 QtWebEngineCore 0x000000012ce3904a 0x128f39000 + 66060362 9 QtWebEngineCore 0x000000012ce60908 0x128f39000 + 66222344 10 libsystem_pthread.dylib 0x00007fff2053e8fc _pthread_start + 224 11 libsystem_pthread.dylib 0x00007fff2053a443 thread_start + 15 Thread 20:: ThreadPoolSingleThreadForegroundBlocking0 0 ??? 0x00007ffe949268f4 ??? 1 libsystem_kernel.dylib 0x00007fff205092aa mach_msg_trap + 10 2 QtWebEngineCore 0x000000012ce67e26 0x128f39000 + 66252326 3 QtWebEngineCore 0x000000012ce2c7bf 0x128f39000 + 66009023 4 QtWebEngineCore 0x000000012ce2d26c 0x128f39000 + 66011756 5 QtWebEngineCore 0x000000012ce2cecd 0x128f39000 + 66010829 6 QtWebEngineCore 0x000000012ce60908 0x128f39000 + 66222344 7 libsystem_pthread.dylib 0x00007fff2053e8fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff2053a443 thread_start + 15 Thread 21:: NetworkConfigWatcher 0 ??? 0x00007ffe949268f4 ??? 1 libsystem_kernel.dylib 0x00007fff205092aa mach_msg_trap + 10 2 QtWebEngineCore 0x000000012ce67e26 0x128f39000 + 66252326 3 QtWebEngineCore 0x000000012ce67bef 0x128f39000 + 66251759 4 QtWebEngineCore 0x000000012cd9d1c9 0x128f39000 + 65421769 5 QtWebEngineCore 0x000000012ce16a5c 0x128f39000 + 65919580 6 QtWebEngineCore 0x000000012cdce998 0x128f39000 + 65624472 7 QtWebEngineCore 0x000000012ce38eb8 0x128f39000 + 66059960 8 QtWebEngineCore 0x000000012ce3904a 0x128f39000 + 66060362 9 QtWebEngineCore 0x000000012ce60908 0x128f39000 + 66222344 10 libsystem_pthread.dylib 0x00007fff2053e8fc _pthread_start + 224 11 libsystem_pthread.dylib 0x00007fff2053a443 thread_start + 15 Thread 22:: ThreadPoolBackgroundWorker 0 ??? 0x00007ffe949268f4 ??? 1 libsystem_kernel.dylib 0x00007fff205092aa mach_msg_trap + 10 2 QtWebEngineCore 0x000000012ce67e26 0x128f39000 + 66252326 3 QtWebEngineCore 0x000000012ce2c7bf 0x128f39000 + 66009023 4 QtWebEngineCore 0x000000012ce2d26c 0x128f39000 + 66011756 5 QtWebEngineCore 0x000000012ce2cddd 0x128f39000 + 66010589 6 QtWebEngineCore 0x000000012ce60908 0x128f39000 + 66222344 7 libsystem_pthread.dylib 0x00007fff2053e8fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff2053a443 thread_start + 15 Thread 23:: com.apple.NSEventThread 0 ??? 0x00007ffe949268f4 ??? 1 libsystem_kernel.dylib 0x00007fff205092aa mach_msg_trap + 10 2 com.apple.CoreFoundation 0x00007fff20636c75 __CFRunLoopServiceMachPort + 316 3 com.apple.CoreFoundation 0x00007fff2063533b __CFRunLoopRun + 1332 4 com.apple.CoreFoundation 0x00007fff20634740 CFRunLoopRunSpecific + 567 5 com.apple.AppKit 0x00007fff22eedbba _NSEventThread + 124 6 libsystem_pthread.dylib 0x00007fff2053e8fc _pthread_start + 224 7 libsystem_pthread.dylib 0x00007fff2053a443 thread_start + 15 Thread 24:: MemoryInfra 0 ??? 0x00007ffe949268f4 ??? 1 libsystem_kernel.dylib 0x00007fff205092aa mach_msg_trap + 10 2 QtWebEngineCore 0x000000012ce67e26 0x128f39000 + 66252326 3 QtWebEngineCore 0x000000012ce67bef 0x128f39000 + 66251759 4 QtWebEngineCore 0x000000012cd9d1c9 0x128f39000 + 65421769 5 QtWebEngineCore 0x000000012ce16a5c 0x128f39000 + 65919580 6 QtWebEngineCore 0x000000012cdce998 0x128f39000 + 65624472 7 QtWebEngineCore 0x000000012ce38eb8 0x128f39000 + 66059960 8 QtWebEngineCore 0x000000012ce3904a 0x128f39000 + 66060362 9 QtWebEngineCore 0x000000012ce60908 0x128f39000 + 66222344 10 libsystem_pthread.dylib 0x00007fff2053e8fc _pthread_start + 224 11 libsystem_pthread.dylib 0x00007fff2053a443 thread_start + 15 Thread 25:: ThreadPoolSingleThreadSharedBackgroundBlocking1 0 ??? 0x00007ffe949268f4 ??? 1 libsystem_kernel.dylib 0x00007fff205092aa mach_msg_trap + 10 2 QtWebEngineCore 0x000000012ce67e26 0x128f39000 + 66252326 3 QtWebEngineCore 0x000000012ce2c7bf 0x128f39000 + 66009023 4 QtWebEngineCore 0x000000012ce2cf9a 0x128f39000 + 66011034 5 QtWebEngineCore 0x000000012ce2ce0d 0x128f39000 + 66010637 6 QtWebEngineCore 0x000000012ce60908 0x128f39000 + 66222344 7 libsystem_pthread.dylib 0x00007fff2053e8fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff2053a443 thread_start + 15 Thread 26: 0 ??? 0x00007ffe949268f4 ??? 1 libsystem_kernel.dylib 0x00007fff2050bcce __psynch_cvwait + 10 2 libopenblas.0.dylib 0x000000018d83d70f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff2053e8fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff2053a443 thread_start + 15 Thread 27: 0 ??? 0x00007ffe949268f4 ??? 1 libsystem_kernel.dylib 0x00007fff2050bcce __psynch_cvwait + 10 2 libopenblas.0.dylib 0x000000018d83d70f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff2053e8fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff2053a443 thread_start + 15 Thread 28: 0 ??? 0x00007ffe949268f4 ??? 1 libsystem_kernel.dylib 0x00007fff2050bcce __psynch_cvwait + 10 2 libopenblas.0.dylib 0x000000018d83d70f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff2053e8fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff2053a443 thread_start + 15 Thread 29: 0 ??? 0x00007ffe949268f4 ??? 1 libsystem_kernel.dylib 0x00007fff2050bcce __psynch_cvwait + 10 2 libopenblas.0.dylib 0x000000018d83d70f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff2053e8fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff2053a443 thread_start + 15 Thread 30: 0 ??? 0x00007ffe949268f4 ??? 1 libsystem_kernel.dylib 0x00007fff2050bcce __psynch_cvwait + 10 2 libopenblas.0.dylib 0x000000018d83d70f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff2053e8fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff2053a443 thread_start + 15 Thread 31: 0 ??? 0x00007ffe949268f4 ??? 1 libsystem_kernel.dylib 0x00007fff2050bcce __psynch_cvwait + 10 2 libopenblas.0.dylib 0x000000018d83d70f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff2053e8fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff2053a443 thread_start + 15 Thread 32: 0 ??? 0x00007ffe949268f4 ??? 1 libsystem_kernel.dylib 0x00007fff2050bcce __psynch_cvwait + 10 2 libopenblas.0.dylib 0x000000018d83d70f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff2053e8fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff2053a443 thread_start + 15 Thread 33: 0 runtime 0x00007ffdffde87c8 0x7ffdffdc6000 + 141256 Thread 34: 0 runtime 0x00007ffdffde87c8 0x7ffdffdc6000 + 141256 Thread 35: 0 runtime 0x00007ffdffde87c8 0x7ffdffdc6000 + 141256 Thread 36: 0 runtime 0x00007ffdffde87c8 0x7ffdffdc6000 + 141256 Thread 37: 0 runtime 0x00007ffdffde87c8 0x7ffdffdc6000 + 141256 Thread 38: 0 runtime 0x00007ffdffde87c8 0x7ffdffdc6000 + 141256 Thread 39: 0 runtime 0x00007ffdffde87c8 0x7ffdffdc6000 + 141256 Thread 40: 0 runtime 0x00007ffdffde87c8 0x7ffdffdc6000 + 141256 Thread 41: 0 runtime 0x00007ffdffde87c8 0x7ffdffdc6000 + 141256 Thread 42: 0 runtime 0x00007ffdffde87c8 0x7ffdffdc6000 + 141256 Thread 43: 0 runtime 0x00007ffdffde87c8 0x7ffdffdc6000 + 141256 Thread 44: 0 runtime 0x00007ffdffde87c8 0x7ffdffdc6000 + 141256 Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000000000000 rbx: 0x000000020131be00 rcx: 0x0000000000000000 rdx: 0x0000000000000000 rdi: 0xebad5d4ae73797ce rsi: 0x0000000148d76088 rbp: 0xebad5d4ae73797ce rsp: 0x0000000148d76088 r8: 0x000000000000000b r9: 0xebad5d4ae73797ce r10: 0x000000020131be00 r11: 0x00007fff20422bbb r12: 0x0000000000000103 r13: 0x0000000000000000 r14: 0x000000000000000b r15: 0x0000000000000016 rip: rfl: 0x0000000000000283 Binary Images: 0x100eb7000 - 0x100eb7fff +edu.ucsf.cgl.ChimeraX (1.5.0 - 1.5.0.0) /Applications/ChimeraX-1.5.app/Contents/MacOS/ChimeraX 0x108ed0000 - 0x108f1ffff +libRosettaRuntime (203.58) 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libpmsample.dylib (227.140.1) /usr/lib/libpmsample.dylib 0x7fff54189000 - 0x7fff541bffff com.apple.ReplayKit (1.0 - 1) /System/Library/Frameworks/ReplayKit.framework/Versions/A/ReplayKit 0x7fff557b5000 - 0x7fff557b8fff com.apple.ForceFeedback (1.0.6 - 1.0.6) /System/Library/Frameworks/ForceFeedback.framework/Versions/A/ForceFeedback 0x7fff698ad000 - 0x7fff698b1fff libmetal_timestamp.dylib (31001.192.1) /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/31001/Libraries/libmetal_timestamp.dylib 0x7fff6bcf8000 - 0x7fff6bcfefff libCoreFSCache.dylib (200.12) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreFSCache.dylib 0x7fff6bcff000 - 0x7fff6bd03fff libCoreVMClient.dylib (200.12) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib 0x7fff6bd04000 - 0x7fff6bd13fff com.apple.opengl (18.5.9 - 18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL 0x7fff6bd14000 - 0x7fff6bd16fff libCVMSPluginSupport.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib 0x7fff6bd17000 - 0x7fff6bd1ffff libGFXShared.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib 0x7fff6bd20000 - 0x7fff6bd53fff libGLImage.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib 0x7fff6bd54000 - 0x7fff6bd90fff libGLU.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib 0x7fff6bd91000 - 0x7fff6bf24fff libGLProgrammability.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib 0x7fff6bf25000 - 0x7fff6bf2ffff libGL.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib 0x7fff6bf30000 - 0x7fff6c0adfff GLEngine (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine 0x7fff6c0ae000 - 0x7fff6c0d6fff GLRendererFloat (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat 0x7fff6d36f000 - 0x7fff6d3c7fff com.apple.opencl (4.6 - 4.6) /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL 0x7fff6e471000 - 0x7fff6e478fff com.apple.agl (3.3.4 - AGL-3.3.3) /System/Library/Frameworks/AGL.framework/Versions/A/AGL 0x7fff6e479000 - 0x7fff6e560fff com.apple.audio.AVFAudio (1.0 - 477.88) /System/Library/Frameworks/AVFAudio.framework/Versions/A/AVFAudio 0x7fff6f6f8000 - 0x7fff6f702fff com.apple.AccessibilityBundles (1.0 - 174) /System/Library/PrivateFrameworks/AccessibilityBundles.framework/Versions/A/AccessibilityBundles 0x7fff6fae6000 - 0x7fff6faf8fff com.apple.CMImaging (1.0 - 82.6) /System/Library/PrivateFrameworks/CMImaging.framework/Versions/A/CMImaging 0x7fff73e12000 - 0x7fff73e1dfff com.apple.SymptomAnalytics (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomAnalytics.framework/Versions/A/SymptomAnalytics 0x7fff74033000 - 0x7fff7404bfff com.apple.SymptomPresentationFeed (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomPresentationFeed.framework/Versions/A/SymptomPresentationFeed 0x7fff7795a000 - 0x7fff77961fff libRosetta.dylib (203.58) /usr/lib/libRosetta.dylib Translated Code Information: tmp0: 0xffffffffffffffff tmp1: 0x00007ffe949268c8 tmp2: 0x00007fff2050f914 External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 0 thread_create: 0 thread_set_state: 0 VM Region Summary: ReadOnly portion of Libraries: Total=1.2G resident=0K(0%) swapped_out_or_unallocated=1.2G(100%) Writable regions: Total=2.6G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.6G(100%) VIRTUAL REGION REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Accelerate framework 384K 3 Activity Tracing 256K 1 CG backing stores 18.6M 17 CG image 192K 31 CoreAnimation 184K 29 CoreGraphics 20K 4 CoreServices 144K 1 CoreUI image data 2404K 26 Foundation 36K 2 Kernel Alloc Once 8K 1 MALLOC 1.1G 243 MALLOC guard page 192K 8 MALLOC_MEDIUM (reserved) 624.0M 8 reserved VM address space (unallocated) Mach message 16K 4 OpenGL GLSL 384K 4 Rosetta Arena 4096K 2 Rosetta Generic 1440K 357 Rosetta IndirectBranch 2048K 1 Rosetta JIT 128.0M 1 Rosetta Return Stack 880K 88 Rosetta Thread Context 880K 88 STACK GUARD 48K 12 Stack 149.7M 44 Stack Guard 56.1M 32 VM_ALLOCATE 105.7M 354 VM_ALLOCATE (reserved) 224.1M 19 reserved VM address space (unallocated) __DATA 38.2M 703 __DATA_CONST 25.6M 312 __DATA_DIRTY 1710K 212 __FONT_DATA 4K 1 __GLSLBUILTINS 5176K 1 __LINKEDIT 546.1M 285 __OBJC_RO 70.2M 1 __OBJC_RW 2496K 2 __TEXT 734.2M 679 __UNICODE 588K 1 mapped file 4.3G 1210 shared memory 3856K 30 unshared pmap 10.5M 6 =========== ======= ======= TOTAL 8.1G 4823 TOTAL, minus reserved VM space 7.3G 4823 ===== Log before crash start ===== UCSF ChimeraX version: 1.5 (2022-11-24) © 2016-2022 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/lochuynh/OneDrive - University of Florida/LAB > RESEARCH/ChimeraX/7uo1 - Eco RNase P with ptRNA-CAU/7uo1 - AU v5.cxs"" format > session opened ChimeraX session > select /C:-4 30 atoms, 31 bonds, 1 residue, 1 model selected > select /C:-4-0 154 atoms, 164 bonds, 5 residues, 1 model selected > style sel ringFill thick Changed 5 residue ring styles > undo > style sel ringFill thin Changed 5 residue ring styles > undo > select /C:-4 30 atoms, 31 bonds, 1 residue, 1 model selected > select /B:248 33 atoms, 35 bonds, 1 residue, 1 model selected > label (#!1 & sel) text ""{0.name} {0.number}{0.insertion_code}"" > select /C:-4 30 atoms, 31 bonds, 1 residue, 1 model selected > select /C:-4-0 154 atoms, 164 bonds, 5 residues, 1 model selected > label sel text ""{0.name} {0.number}{0.insertion_code}"" > undo > select /C:-4 30 atoms, 31 bonds, 1 residue, 1 model selected > select /C:-4-0 154 atoms, 164 bonds, 5 residues, 1 model selected > ~label sel residues > select /B:248 33 atoms, 35 bonds, 1 residue, 1 model selected > ~label (#!1 & sel) residues > label (#!1 & sel) text A248 > undo > select clear > select /B:248 33 atoms, 35 bonds, 1 residue, 1 model selected > ~label (#!1 & sel) residues > select /C:-4 30 atoms, 31 bonds, 1 residue, 1 model selected > select /C:-4-0 154 atoms, 164 bonds, 5 residues, 1 model selected > style spec stick Expected a keyword > style sel spec stick Expected a keyword > select /B:324-325 65 atoms, 69 bonds, 2 residues, 1 model selected > select /B:324-325 65 atoms, 69 bonds, 2 residues, 1 model selected > select /B:320-373 1728 atoms, 1861 bonds, 54 residues, 1 model selected > select /B:1-373 12071 atoms, 13034 bonds, 373 residues, 1 model selected > cartoon style sel width 1.25 thickness 1.25 xsection oval > select /B:373 32 atoms, 33 bonds, 1 residue, 1 model selected > select /B:1-373 12071 atoms, 13034 bonds, 373 residues, 1 model selected > cartoon style sel width 1.25 thickness 1.25 xsection oval > cartoon style sel width 1.25 thickness 1.925 xsection oval > cartoon style sel width 1.25 thickness 1.25 xsection oval > cartoon style sel width 1 thickness 1 xsection oval > select clear > lighting simple > lighting soft > lighting full > lighting soft > lighting simple > save ""/Users/lochuynh/OneDrive - University of Florida/LAB > RESEARCH/ChimeraX/7uo1 - Eco RNase P with ptRNA-CAU/7uo1 - AU v6A.png"" width > 5000 height 2800 supersample 3 > save ""/Users/lochuynh/OneDrive - University of Florida/LAB > RESEARCH/ChimeraX/7uo1 - Eco RNase P with ptRNA-CAU/7uo1 - AU v6.cxs"" > ui tool show ""Side View"" > save ""/Users/lochuynh/OneDrive - University of Florida/LAB > RESEARCH/ChimeraX/7uo1 - Eco RNase P with ptRNA-CAU/7uo1 - AU v6.cxs"" > save ""/Users/lochuynh/OneDrive - University of Florida/LAB > RESEARCH/ChimeraX/7uo1 - Eco RNase P with ptRNA-CAU/7uo1 - AU v6A.png"" width > 5000 height 2800 supersample 3 > save ""/Users/lochuynh/OneDrive - University of Florida/LAB > RESEARCH/ChimeraX/7uo1 - Eco RNase P with ptRNA-CAU/7uo1 - AU v6.cxs"" QQuickWidget: Failed to make context current when creating FBO QQuickWidget: Cannot render due to failing makeCurrent() QQuickWidget: Failed to make context current when creating FBO QQuickWidget: Cannot render due to failing makeCurrent() Window position QRect(-29,194 1984x1111) outside any known screen, using primary screen QQuickWidget: Failed to make context current when creating FBO QQuickWidget: Cannot render due to failing makeCurrent() QQuickWidget: Failed to make context current when creating FBO QQuickWidget: Cannot render due to failing makeCurrent() ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.5 (2022-11-24) © 2016-2022 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 71.7.1 OpenGL renderer: Apple M1 OpenGL vendor: Apple Python: 3.9.11 Locale: en_US.UTF-8 Qt version: PyQt6 6.3.1, Qt 6.3.1 Qt runtime version: 6.3.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: Mac mini Model Identifier: Macmini9,1 Processor Name: Unknown Processor Speed: 2.4 GHz Number of Processors: 1 Total Number of Cores: 8 L2 Cache (per Core): 4 MB Memory: 16 GB Software: System Software Overview: System Version: macOS 11.7.3 (20G1116) Kernel Version: Darwin 20.6.0 Time since boot: 15 days 4:05 Graphics/Displays: Apple M1: Chipset Model: Apple M1 Type: GPU Bus: Built-In Total Number of Cores: 8 Vendor: Apple (0x106b) Metal Family: Supported, Metal GPUFamily Apple 7 Displays: LG HDR 4K: Resolution: 5120 x 2880 (5K/UHD+ - Ultra High Definition Plus) UI Looks like: 2560 x 1440 @ 60.00Hz Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes LG HDR 4K: Resolution: 5120 x 2880 (5K/UHD+ - Ultra High Definition Plus) UI Looks like: 2560 x 1440 @ 60.00Hz Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.1.0 Babel: 2.11.0 backcall: 0.2.0 blockdiag: 3.0.0 build: 0.8.0 certifi: 2021.10.8 cftime: 1.6.2 charset-normalizer: 2.1.1 ChimeraX-AddCharge: 1.4 ChimeraX-AddH: 2.2.1 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2.1 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.6 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.41.5 ChimeraX-AtomicLibrary: 8.0.3 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.7.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.1 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.2 ChimeraX-CommandLine: 1.2.4 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.5 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.1 ChimeraX-DistMonitor: 1.3 ChimeraX-DockPrep: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.2 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.2 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.1 ChimeraX-MatchMaker: 2.0.9 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.8 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.6 ChimeraX-ModelPanel: 1.3.6 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.1 ChimeraX-MouseModes: 1.1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.9.1 ChimeraX-PDB: 2.6.8 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.7.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.1.3 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.24.3 ChimeraX-uniprot: 2.2.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.1.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.1 ChimeraX-WebServices: 1.1.0 ChimeraX-Zone: 1.0.1 colorama: 0.4.5 cxservices: 1.2 cycler: 0.11.0 Cython: 0.29.32 debugpy: 1.6.4 decorator: 5.1.1 docutils: 0.19 entrypoints: 0.4 executing: 1.2.0 filelock: 3.7.1 fonttools: 4.38.0 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.7.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.33 imagecodecs: 2022.7.31 imagesize: 1.4.1 importlib-metadata: 5.1.0 ipykernel: 6.15.3 ipython: 8.4.0 ipython-genutils: 0.2.0 jedi: 0.18.1 Jinja2: 3.1.2 jupyter-client: 7.3.4 jupyter-core: 5.1.0 kiwisolver: 1.4.4 line-profiler: 3.5.1 lxml: 4.9.1 lz4: 4.0.2 MarkupSafe: 2.1.1 matplotlib: 3.5.2 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.0 networkx: 2.8.5 numexpr: 2.8.4 numpy: 1.23.1 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.2.0 pip: 22.2.2 pkginfo: 1.8.3 platformdirs: 2.5.4 prompt-toolkit: 3.0.33 psutil: 5.9.1 ptyprocess: 0.7.0 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.12.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 PyQt6-commercial: 6.3.1 PyQt6-Qt6: 6.3.2 PyQt6-sip: 13.4.0 PyQt6-WebEngine-commercial: 6.3.1 PyQt6-WebEngine-Qt6: 6.3.2 python-dateutil: 2.8.2 pytz: 2022.6 pyzmq: 24.0.1 qtconsole: 5.3.1 QtPy: 2.3.0 RandomWords: 0.4.0 requests: 2.28.1 scipy: 1.9.0 setuptools: 65.1.1 setuptools-scm: 7.0.5 sfftk-rw: 0.7.2 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 5.1.1 sphinx-autodoc-typehints: 1.19.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 tables: 3.7.0 tifffile: 2022.7.31 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.2 traitlets: 5.3.0 typing-extensions: 4.4.0 urllib3: 1.26.13 wcwidth: 0.2.5 webcolors: 1.12 wheel: 0.37.1 wheel-filename: 1.4.1 zipp: 3.11.0 }}} " defect feedback normal Window Toolkit Eric Pettersen all ChimeraX