id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 8492 ISOLDE: Can't install package: invalid requirement specified ichcharisma@… Tristan Croll "{{{ The following bug report has been submitted: Platform: macOS-10.16-x86_64-i386-64bit ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC) Description Every time i try to install ISOLDE through Tools > More Tools, the loading process below the windows never finished even the .whl file in my finder shows complete download. So no pop up for installing ISOLDE Log: > open 7u0n 7u0n title: Crystal structure of chimeric ο RBD (strain BA.1) complexed with human ACE2 [more info...] Chain information for 7u0n #1 --- Chain | Description | UniProt A B | Angiotensin-converting enzyme 2 | ACE2_HUMAN E F | Spike protein S1 | Non-standard residues in 7u0n #1 --- BMA — beta-D-mannopyranose (beta-D-mannose; D-mannose; mannose) CL — chloride ion EDO — 1,2-ethanediol (ethylene glycol) MG — magnesium ion NAG — 2-acetamido-2-deoxy-beta-D-glucopyranose (N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE) ZN — zinc ion 7u0n mmCIF Assemblies --- 1| author_defined_assembly 2| author_defined_assembly > sym #1 assembly 1 copies true > close #1 > view > delete ~protein > color bychaij Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero', 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', or 'random' or a keyword > color bychain > viewe top Unknown command: viewe top > view > view matrix view matrix camera 1,0,0,16.215,0,1,0,-1.4103,0,0,1,446.16 view matrix models #2,1,0,0,0,0,1,0,0,0,0,1,0,#2.1,1,0,0,0,0,1,0,0,0,0,1,0,#2.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#2.1.2,1,0,0,0,0,1,0,0,0,0,1,0 > turn y 90 [Repeated 3 time(s)] > turn x 90 [Repeated 3 time(s)] > turn z 90 [Repeated 2 time(s)] > view > turn z 90 > \ Unknown command: \ > \ Unknown command: \ > turn z 90 > turn y 90 [Repeated 1 time(s)] > select /a 4862 atoms, 5002 bonds, 596 residues, 1 model selected > select /b Nothing selected > select /c Nothing selected > select /e 1500 atoms, 1546 bonds, 1 pseudobond, 188 residues, 2 models selected > select zone /e 10 Selected 412 atoms > hbonds sel restrict /e intraMol true log true reveal true Finding intermodel H-bonds Finding intramodel H-bonds Constraints relaxed by 0.4 angstroms and 20 degrees Models used: 2.1 7u0n 11 H-bonds H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist): /A SER 19 OG /E ALA 475 O no hydrogen 3.403 N/A /A HIS 34 NE2 /E SER 494 O no hydrogen 3.211 N/A /A TYR 41 OH /E THR 500 OG1 no hydrogen 2.491 N/A /A TYR 83 OH /E ASN 487 OD1 no hydrogen 2.332 N/A /E ARG 439 NH2 /A GLU 329 OE2 no hydrogen 3.369 N/A /E TYR 449 OH /A ASP 38 OD1 no hydrogen 3.373 N/A /E TYR 449 OH /A ASP 38 OD2 no hydrogen 3.173 N/A /E ASN 487 ND2 /A GLN 24 OE1 no hydrogen 2.960 N/A /E SER 496 OG /A ASP 38 OD1 no hydrogen 2.508 N/A /E THR 500 OG1 /A TYR 41 OH no hydrogen 2.491 N/A /E GLY 502 N /A LYS 353 O no hydrogen 3.175 N/A 11 hydrogen bonds found > surface /e color tan > lighting soft > select fro name zone10 sel Expected an objects specifier or a keyword > name frozen zone10 sel > select clear > label hbond Expected one of 'atoms', 'bonds', 'pseudobonds', or 'residues' or a keyword > label hyd Expected one of 'atoms', 'bonds', 'pseudobonds', or 'residues' or a keyword > label hydrogen bonds Expected one of 'atoms', 'bonds', 'pseudobonds', or 'residues' or a keyword > label #2.1.3 > label #2.1.3 height 5 offset 1,1,1 > label #2.1.3 height 1 offset 1,1,1 > select /a 4862 atoms, 5002 bonds, 596 residues, 1 model selected > hide sel target c > color sel byelement Drag select of 85 atoms, 79 bonds > hide sel target a Drag select of 23 atoms, 22 bonds Drag select of 25 atoms, 23 bonds Drag select of 8 atoms, 7 bonds Drag select of 18 atoms, 16 bonds Drag select of 8 atoms, 7 bonds > hide sel target a > select up 2 atoms, 1 bond, 1 residue, 1 model selected > select up 9 atoms, 8 bonds, 1 residue, 1 model selected > hide sel target a > view > label #2.1.3 height 0.1 offset 1,1,1 > label #2.1.3 height 0.5 offset 1,1,1 > select /e 1500 atoms, 1546 bonds, 1 pseudobond, 188 residues, 2 models selected > select /a 4862 atoms, 5002 bonds, 596 residues, 1 model selected > select /e 1500 atoms, 1546 bonds, 1 pseudobond, 188 residues, 2 models selected > color sel tan target c > select clear > select /e 1500 atoms, 1546 bonds, 1 pseudobond, 188 residues, 2 models selected > select /e:439,449,487,496,500,502,475,494,500,487 59 atoms, 52 bonds, 8 residues, 1 model selected > color sel orange > select clear > lighting simple > lighting soft > lighting full > lighting soft > show /e > show /a target c > select residues true sequence IEEQAKTFLDKFNHEAEDLF 171 atoms, 174 bonds, 20 residues, 1 model selected > select residues true sequence Missing ""sequence"" keyword's argument > AGDKWSAFLKE Unknown command: AGDKWSAFLKE > AGDKWSAFLKE Unknown command: AGDKWSAFLKE > select clear > select residues true sequence Missing ""sequence"" keyword's argument > AGDKWSAFLKE Unknown command: AGDKWSAFLKE > select residues true sequence Missing ""sequence"" keyword's argument > AGDKWSAFLKE Unknown command: AGDKWSAFLKE > select residues true sequence AGDKWSAFLKE 88 atoms, 90 bonds, 11 residues, 1 model selected Alignment identifier is 2.1/A > select residues true sequence AGDKWSAFLKE 88 atoms, 90 bonds, 11 residues, 1 model selected > select residues true sequence AGDKWSAFLKE 88 atoms, 90 bonds, 11 residues, 1 model selected > select > /A:20-52,55-88,90-101,103-130,146-155,157-195,198-208,218-252,265-267,275-283,293-300,303-318,324-331,336-340,365-393,399-422,431-446,449-466,469-484,499-508,513-533,538-542,547-559,565-575,581-602 3611 atoms, 3686 bonds, 436 residues, 1 model selected > select clear > Incomplete command: sequence > show Unknown command: sequence show > sequence chain /e Alignment identifier is 2.1/E > select /A:65-66 9 atoms, 8 bonds, 2 residues, 1 model selected > select /A:65-74 79 atoms, 81 bonds, 10 residues, 1 model selected > select /E:455 8 atoms, 7 bonds, 1 residue, 1 model selected > select /E:455-456 19 atoms, 19 bonds, 2 residues, 1 model selected > select /A:65 5 atoms, 4 bonds, 1 residue, 1 model selected > select /A:65-71 51 atoms, 52 bonds, 7 residues, 1 model selected > select /E:455 8 atoms, 7 bonds, 1 residue, 1 model selected > select /E:455-458 39 atoms, 39 bonds, 4 residues, 1 model selected > select residues true sequence AGDKWSAFLKE 88 atoms, 90 bonds, 11 residues, 1 model selected > hide #!2 models > open 6m17 Summary of feedback from opening 6m17 fetched from pdb --- note | Fetching compressed mmCIF 6m17 from http://files.rcsb.org/download/6m17.cif 6m17 title: The 2019-nCoV RBD/ACE2-B0AT1 complex [more info...] Chain information for 6m17 #1 --- Chain | Description | UniProt A C | Sodium-dependent neutral amino acid transporter B(0)AT1 | S6A19_HUMAN B D | Angiotensin-converting enzyme 2 | ACE2_HUMAN E F | Spike protein S1 | SPIKE_SARS2 Non-standard residues in 6m17 #1 --- LEU — leucine NAG — 2-acetamido-2-deoxy-beta-D-glucopyranose (N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE) ZN — zinc ion > view > sym #1 assembly 1 copy t Expected a keyword > sym #1 assembly 1 > hide #!3.1 models > show #!3.1 models > hide #!3.1 models > show #!3.1 models > delete ~protein > hide #1 target a > hide #3 target a > show #3 target c > select residues true sequence AGDKWSAFLKE 440 atoms, 450 bonds, 55 residues, 3 models selected > sequence chain #3/b Alignment identifier is 3.1/B > select #1/B:21-768 6089 atoms, 6255 bonds, 748 residues, 1 model selected > select #1/B:21-768 6089 atoms, 6255 bonds, 748 residues, 1 model selected > select #1/D:21-768 6089 atoms, 6255 bonds, 748 residues, 1 model selected > close #1 > select #3.1/B:65-66 9 atoms, 8 bonds, 2 residues, 1 model selected > select #3.1/B:65-74 79 atoms, 81 bonds, 10 residues, 1 model selected > select #3.1/B:22 9 atoms, 8 bonds, 1 residue, 1 model selected > select #3.1/B:22-29 67 atoms, 67 bonds, 8 residues, 1 model selected > hide #!3 models > show #!2 models > view > movie record > turn y 2 180 > wait 180 > movie encode /Users/ich/Desktop/movie1.mp4 Movie saved to /Users/ich/Desktop/movie1.mp4 > close #3 > view [Repeated 1 time(s)] > hide /e target c > view > ui mousemode right select Drag select of 263 residues > select up 3122 atoms, 3205 bonds, 378 residues, 1 model selected > select up 4862 atoms, 5002 bonds, 596 residues, 1 model selected > hide sel target c > view > select clear > select /E:415@O 1 atom, 1 residue, 1 model selected > select up 7 atoms, 6 bonds, 1 residue, 2 models selected > select up 32 atoms, 32 bonds, 5 residues, 2 models selected > select up 1500 atoms, 1546 bonds, 188 residues, 2 models selected > select up 6362 atoms, 6548 bonds, 784 residues, 2 models selected > select down 1500 atoms, 1546 bonds, 188 residues, 2 models selected > hide sel target s > select clear > select /E:509@NH1 1 atom, 1 residue, 1 model selected > select up 11 atoms, 10 bonds, 1 residue, 2 models selected > select up 93 atoms, 95 bonds, 11 residues, 2 models selected > select up 1500 atoms, 1546 bonds, 188 residues, 2 models selected > color sel dark red > select clear > lighting full > select up 2 atoms, 1 bond, 1 residue, 1 model selected > select up 7 atoms, 6 bonds, 1 residue, 2 models selected > color sel byelement > select up 2 atoms, 1 bond, 1 residue, 1 model selected > select up 11 atoms, 10 bonds, 1 residue, 2 models selected > color sel by chain Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero', 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', or 'random' or a keyword > color sel byelement > select up 2 atoms, 1 bond, 1 residue, 1 model selected > select up 4 atoms, 3 bonds, 1 residue, 2 models selected > select up 25 atoms, 25 bonds, 4 residues, 2 models selected > color sel byelement > view > select up 2 atoms, 1 bond, 1 residue, 1 model selected > select up 8 atoms, 7 bonds, 1 residue, 2 models selected > color sel byelement > select up 2 atoms, 1 bond, 2 residues, 1 model selected > select up 9 atoms, 8 bonds, 2 residues, 2 models selected > color sel byelement > select /E:477@CB 1 atom, 1 residue, 1 model selected > select up 6 atoms, 5 bonds, 1 residue, 2 models selected > select up 82 atoms, 83 bonds, 13 residues, 2 models selected > select up 1500 atoms, 1546 bonds, 188 residues, 2 models selected > show sel target s > surface sel color tan > select clear > select /E:477@CB 1 atom, 1 residue, 1 model selected > select up 6 atoms, 5 bonds, 1 residue, 2 models selected > select up 82 atoms, 83 bonds, 13 residues, 2 models selected > select up 1500 atoms, 1546 bonds, 188 residues, 2 models selected > transparency surf Missing or invalid ""percent"" argument: Expected a number > transparency surf 50 Missing or invalid ""percent"" argument: Expected a number > transparency sel 50 > view > sill t Unknown command: sill t > transparency sel 80 > set bgColor white > surface sel color dark green > transparency sel 80 > graphics silhouettes true > lighting soft > open open 6m17 'open' has no suffix > open 6m17 6m17 title: The 2019-nCoV RBD/ACE2-B0AT1 complex [more info...] Chain information for 6m17 #1 --- Chain | Description | UniProt A C | Sodium-dependent neutral amino acid transporter B(0)AT1 | S6A19_HUMAN B D | Angiotensin-converting enzyme 2 | ACE2_HUMAN E F | Spike protein S1 | SPIKE_SARS2 Non-standard residues in 6m17 #1 --- LEU — leucine NAG — 2-acetamido-2-deoxy-beta-D-glucopyranose (N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE) ZN — zinc ion > hide #!2 models > view > delete ~protein > movie record > turn y 2 180 > wait 180 > movie encode /Users/ich/Desktop/movie2.mp4 Movie saved to /Users/ich/Desktop/movie2.mp4 > color #1 bychain > hide #1 target a > show #1 target c > select #1/e,f 2924 atoms, 3012 bonds, 366 residues, 1 model selected > select #1/a,c 9598 atoms, 9884 bonds, 1210 residues, 1 model selected > delete sel > select #1/d,f 7551 atoms, 7761 bonds, 931 residues, 1 model selected > delete sel > view > select #1/e 1462 atoms, 1506 bonds, 183 residues, 1 model selected > show sel target s > color list 1 custom color: ocean . 248 builtin colors: alice blue , aliceblue , antique white , antiquewhite , aqua , aquamarine , azure , beige , bisque , black , blanched almond , blanchedalmond , blue , blue violet , blueviolet , brown , burly wood , burlywood , cadet blue , cadetblue , chartreuse , chocolate , coral , cornflower blue , cornflowerblue , cornsilk , crimson , cyan , dark blue , dark cyan , dark goldenrod , dark gray , dark green , dark grey , dark khaki , dark magenta , dark olive green , dark orange , dark orchid , dark red , dark salmon , dark sea green , dark seagreen , dark slate blue , dark slate gray , dark slate grey , dark turquoise , dark violet , darkblue , darkcyan , darkgoldenrod , darkgray , darkgreen , darkgrey , darkkhaki , darkmagenta , darkolivegreen , darkorange , darkorchid , darkred , darksalmon , darkseagreen , darkslateblue , darkslategray , darkslategrey , darkturquoise , darkviolet , deep pink , deep sky blue , deep skyblue , deeppink , deepskyblue , dim gray , dim grey , dimgray , dimgrey , dodger blue , dodgerblue , fire brick , firebrick , floral white , floralwhite , forest green , forestgreen , fuchsia , gainsboro , ghost white , ghostwhite , gold , goldenrod , gray , green , green yellow , greenyellow , grey , honeydew , hot pink , hotpink , indian red , indianred , indigo , ivory , khaki , lavender , lavender blush , lavenderblush , lawn green , lawngreen , lemon chiffon , lemonchiffon , light blue , light coral , light cyan , light goldenrod yellow , light gray , light green , light grey , light pink , light salmon , light sea green , light seagreen , light sky blue , light skyblue , light slate gray , light slate grey , light steel blue , light yellow , lightblue , lightcoral , lightcyan , lightgoldenrodyellow , lightgray , lightgreen , lightgrey , lightpink , lightsalmon , lightseagreen , lightskyblue , lightslategray , lightslategrey , lightsteelblue , lightyellow , lime , lime green , limegreen , linen , magenta , maroon , medium aquamarine , medium blue , medium orchid , medium purple , medium sea green , medium seagreen , medium slate blue , medium spring green , medium turquoise , medium violet red , mediumaquamarine , mediumblue , mediumorchid , mediumpurple , mediumseagreen , mediumslateblue , mediumspringgreen , mediumturquoise , mediumvioletred , midnight blue , midnightblue , mint cream , mintcream , misty rose , mistyrose , moccasin , navajo white , navajowhite , navy , old lace , oldlace , olive , olive drab , olivedrab , orange , orange red , orangered , orchid , pale goldenrod , pale green , pale turquoise , pale violet red , palegoldenrod , palegreen , paleturquoise , palevioletred , papaya whip , papayawhip , peach puff , peachpuff , peru , pink , plum , powder blue , powderblue , purple , rebecca purple , rebeccapurple , red , rosy brown , rosybrown , royal blue , royalblue , saddle brown , saddlebrown , salmon , sandy brown , sandybrown , sea green , seagreen , seashell , sienna , silver , sky blue , skyblue , slate blue , slate gray , slate grey , slateblue , slategray , slategrey , snow , spring green , springgreen , steel blue , steelblue , tan , teal , thistle , tomato , transparent , turquoise , violet , wheat , white , white smoke , whitesmoke , yellow , yellow green , and yellowgreen . > surface /e color tan transparency 80 > select clear > select zone /b 10 Selected 362 atoms > hbonds sel restrict /b intraMol true reveal true log true label 2 Expected a keyword > hbonds sel restrict /b intraMol true reveal true log true showDist true Finding intermodel H-bonds Finding intramodel H-bonds Constraints relaxed by 0.4 angstroms and 20 degrees Models used: 1 6m17 9 H-bonds H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist): 6m17 #1/B TYR 83 OH 6m17 #1/E ASN 487 OD1 no hydrogen 2.908 N/A 6m17 #1/B LYS 353 NZ 6m17 #1/E GLY 496 O no hydrogen 3.107 N/A 6m17 #1/B LYS 353 NZ 6m17 #1/E ASN 501 OD1 no hydrogen 3.008 N/A 6m17 #1/B ARG 357 NH1 6m17 #1/E THR 500 OG1 no hydrogen 2.577 N/A 6m17 #1/E LYS 417 NZ 6m17 #1/B ASP 30 OD1 no hydrogen 3.085 N/A 6m17 #1/E LYS 417 NZ 6m17 #1/B ASP 30 OD2 no hydrogen 2.921 N/A 6m17 #1/E TYR 449 OH 6m17 #1/B ASP 38 OD1 no hydrogen 2.989 N/A 6m17 #1/E GLN 498 NE2 6m17 #1/B GLN 42 OE1 no hydrogen 2.734 N/A 6m17 #1/E THR 500 OG1 6m17 #1/B ASP 355 OD2 no hydrogen 3.101 N/A 9 hydrogen bonds found > style #1 stick Changed 7551 atom styles > color #2.1.3 black models > color #2.1.3 #00fdffff models > color #1.3.1 black models > color #1.3.1 #424242ff models > color #1.3.1 #919191ff models > color #1.3.1 #797979ff models > color #1.3.1 #424242ff models > label #1.3.1 height 0.5 offset 1,1,1 > select clear > select add #1.3 9 pseudobonds, 2 models selected > select subtract #1.3 Nothing selected > select #1/E:487@OD1 1 atom, 1 residue, 1 model selected > select #1/E:487@OD1 1 atom, 1 residue, 1 model selected > select clear > close #2 > select residues true sequence Missing ""sequence"" keyword's argument > IEEQAKTFLDKFNHEAEDLF Unknown command: IEEQAKTFLDKFNHEAEDLF > select residues true sequence IEEQAKTFLDKFNHEAEDLF 171 atoms, 174 bonds, 20 residues, 1 model selected > color > color modify sel saturation 60 [Repeated 1 time(s)] > color modify sel saturation -60 > color modify sel saturation 60 > undo [Repeated 3 time(s)] > color modify sel lightness 50 > color modify sel lightness -50 > color modify sel lightness 10 > color modify sel lightness -10 > color modify sel lightness -1 > color modify sel contrast 50 > color modify sel contrast 0 > color modify sel contrast 100 > color modify sel saturation 10 > color modify sel saturation 30 > color modify sel saturation 70 > color modify sel saturation 100 > color sel green sat 40 Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels', 'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword > color sel lightgreen > select residues true sequence Missing ""sequence"" keyword's argument > AGDKWSAFLKE Unknown command: AGDKWSAFLKE > AGDKWSAFLKE Unknown command: AGDKWSAFLKE > select residues true sequence AGDKWSAFLKE 88 atoms, 90 bonds, 11 residues, 1 model selected > color sel softgreen Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero', 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', or 'random' or a keyword > color sel darkgreen > select clear > select residues true sequence AGDKWSAFLKE 88 atoms, 90 bonds, 11 residues, 1 model selected > name frozen f1 sel > select residues true sequence IEEQAKTFLDKFNHEAEDLF 171 atoms, 174 bonds, 20 residues, 1 model selected > name frozen f2 sel > select /e 1462 atoms, 1506 bonds, 183 residues, 1 model selected > select /b 6089 atoms, 6255 bonds, 748 residues, 1 model selected > select subtract f1,f2 Expected an objects specifier or a keyword > select subtract f1 & f2 6089 atoms, 6255 bonds, 748 residues, 1 model selected > hide sel target c > select f1 & f2 Nothing selected > show sel target c > show f1 target c > show f2 target c > view > select clear > sill f Unknown command: sill f > sil f Unknown command: sil f > sil Unknown command: sil > silh Unknown command: silh > graphics silhouettes false > sil Unknown command: sil > graphics silhouettes 0.01 Expected true or false or a keyword > graphics silhouettes color grey > graphics silhouettes #1 col grey Expected true or false or a keyword > graphics silhouettes true > graphics silhouettes width 0.5 > graphics silhouettes width 1 > label > select clear > select up 2 atoms, 1 bond, 1 residue, 1 model selected > select up 11 atoms, 10 bonds, 1 residue, 1 model selected > select /B:355@CB 1 atom, 1 residue, 1 model selected > select clear > sequence chain /b Alignment identifier is 1/B > select /b 6089 atoms, 6255 bonds, 748 residues, 1 model selected > select clear > label #1.3.1 height 3 > label #1.3.1 height 10 > label #1.3 > label #1.3 color dark grey > label #1.3 color black > label #1.3 color black size 10 > label #1.3 color black height 10 > label #1.3 color black size 48 height 1 > label #1.3 color black size 48 height 0.1 > label #1.3 color black size 48 height 0.5 > select /b 6089 atoms, 6255 bonds, 748 residues, 1 model selected > select /b:21-40 171 atoms, 174 bonds, 20 residues, 1 model selected > color list 1 custom color: ocean . 248 builtin colors: alice blue , aliceblue , antique white , antiquewhite , aqua , aquamarine , azure , beige , bisque , black , blanched almond , blanchedalmond , blue , blue violet , blueviolet , brown , burly wood , burlywood , cadet blue , cadetblue , chartreuse , chocolate , coral , cornflower blue , cornflowerblue , cornsilk , crimson , cyan , dark blue , dark cyan , dark goldenrod , dark gray , dark green , dark grey , dark khaki , dark magenta , dark olive green , dark orange , dark orchid , dark red , dark salmon , dark sea green , dark seagreen , dark slate blue , dark slate gray , dark slate grey , dark turquoise , dark violet , darkblue , darkcyan , darkgoldenrod , darkgray , darkgreen , darkgrey , darkkhaki , darkmagenta , darkolivegreen , darkorange , darkorchid , darkred , darksalmon , darkseagreen , darkslateblue , darkslategray , darkslategrey , darkturquoise , darkviolet , deep pink , deep sky blue , deep skyblue , deeppink , deepskyblue , dim gray , dim grey , dimgray , dimgrey , dodger blue , dodgerblue , fire brick , firebrick , floral white , floralwhite , forest green , forestgreen , fuchsia , gainsboro , ghost white , ghostwhite , gold , goldenrod , gray , green , green yellow , greenyellow , grey , honeydew , hot pink , hotpink , indian red , indianred , indigo , ivory , khaki , lavender , lavender blush , lavenderblush , lawn green , lawngreen , lemon chiffon , lemonchiffon , light blue , light coral , light cyan , light goldenrod yellow , light gray , light green , light grey , light pink , light salmon , light sea green , light seagreen , light sky blue , light skyblue , light slate gray , light slate grey , light steel blue , light yellow , lightblue , lightcoral , lightcyan , lightgoldenrodyellow , lightgray , lightgreen , lightgrey , lightpink , lightsalmon , lightseagreen , lightskyblue , lightslategray , lightslategrey , lightsteelblue , lightyellow , lime , lime green , limegreen , linen , magenta , maroon , medium aquamarine , medium blue , medium orchid , medium purple , medium sea green , medium seagreen , medium slate blue , medium spring green , medium turquoise , medium violet red , mediumaquamarine , mediumblue , mediumorchid , mediumpurple , mediumseagreen , mediumslateblue , mediumspringgreen , mediumturquoise , mediumvioletred , midnight blue , midnightblue , mint cream , mintcream , misty rose , mistyrose , moccasin , navajo white , navajowhite , navy , old lace , oldlace , olive , olive drab , olivedrab , orange , orange red , orangered , orchid , pale goldenrod , pale green , pale turquoise , pale violet red , palegoldenrod , palegreen , paleturquoise , palevioletred , papaya whip , papayawhip , peach puff , peachpuff , peru , pink , plum , powder blue , powderblue , purple , rebecca purple , rebeccapurple , red , rosy brown , rosybrown , royal blue , royalblue , saddle brown , saddlebrown , salmon , sandy brown , sandybrown , sea green , seagreen , seashell , sienna , silver , sky blue , skyblue , slate blue , slate gray , slate grey , slateblue , slategray , slategrey , snow , spring green , springgreen , steel blue , steelblue , tan , teal , thistle , tomato , transparent , turquoise , violet , wheat , white , white smoke , whitesmoke , yellow , yellow green , and yellowgreen . > color sel sesagreen Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero', 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', or 'random' or a keyword > color sel seagreen > select /b:65-75 88 atoms, 90 bonds, 11 residues, 1 model selected > select /e:417,453,458 30 atoms, 28 bonds, 3 residues, 1 model selected > show sel target a > color modify saturation 100 > redo > undo > suurf /b col tan trans 80 Unknown command: suurf /b col tan trans 80 > surface /b color tan transparency 80 > delete /b targ s Expected a keyword > surface /b f Expected a keyword > surface hidePatches /b > surface /e color tan transparency 80 > select clear > select /B:355@OD2 1 atom, 1 residue, 1 model selected > select add /B:355@CA 2 atoms, 2 bonds, 1 residue, 2 models selected > select clear > select add /B:42@CG 1 atom, 2 bonds, 1 residue, 1 model selected > select clear > select add /B:355@OD2 1 atom, 1 bond, 1 residue, 1 model selected > select add /E:449@CD1 2 atoms, 3 bonds, 2 residues, 2 models selected > select subtract /E:449@CD1 1 atom, 3 bonds, 1 residue, 3 models selected > select add /E:417@CE 2 atoms, 7 bonds, 2 residues, 2 models selected > select subtract /E:417@CE 1 atom, 7 bonds, 1 residue, 3 models selected > select add /E:453@OH 2 atoms, 8 bonds, 2 residues, 2 models selected > select subtract /E:453@OH 1 atom, 8 bonds, 1 residue, 3 models selected > color sel byhetero > select clear > select up 2 atoms, 1 bond, 1 residue, 1 model selected > select up 9 atoms, 8 bonds, 1 residue, 2 models selected > color sel byhetero > select add /B:353@NZ 10 atoms, 13 bonds, 2 residues, 2 models selected > select add /B:353@CE 11 atoms, 13 bonds, 2 residues, 2 models selected > select add /B:353@CG 12 atoms, 13 bonds, 2 residues, 2 models selected > select add /E:505@CD2 13 atoms, 13 bonds, 3 residues, 2 models selected > select add /B:353@CB 14 atoms, 13 bonds, 3 residues, 3 models selected > select subtract /E:505@CD2 13 atoms, 13 bonds, 2 residues, 3 models selected > select add /B:353@CA 14 atoms, 13 bonds, 2 residues, 2 models selected > color sel byhetero > select up 2 atoms, 1 bond, 1 residue, 1 model selected > select up 11 atoms, 10 bonds, 1 residue, 2 models selected > select up 13 atoms, 11 bonds, 2 residues, 2 models selected > select up 19 atoms, 17 bonds, 2 residues, 2 models selected > select up 21 atoms, 18 bonds, 3 residues, 2 models selected > select up 27 atoms, 24 bonds, 3 residues, 2 models selected > select up 29 atoms, 25 bonds, 4 residues, 2 models selected > select up 39 atoms, 36 bonds, 4 residues, 2 models selected > color sel byhetero > select clear > select add /E:449@CZ 1 atom, 1 residue, 1 model selected > select /E:449@CD2 1 atom, 1 residue, 1 model selected > select /E:449@CD2 1 atom, 1 residue, 1 model selected > select clear > hide /e target s > select up 4 atoms, 2 bonds, 2 residues, 1 model selected > select up 16 atoms, 14 bonds, 2 residues, 2 models selected > select up 18 atoms, 15 bonds, 3 residues, 2 models selected > select up 28 atoms, 26 bonds, 3 residues, 2 models selected > select up 34 atoms, 29 bonds, 6 residues, 2 models selected > select up 53 atoms, 49 bonds, 6 residues, 2 models selected > select up 57 atoms, 51 bonds, 8 residues, 2 models selected > select up 74 atoms, 69 bonds, 8 residues, 2 models selected > color sel byhetero > label sel > label sel height 0.5 offset 1,1,1 > select clear > select add #1.3.1 1 model selected > select subtract #1.3.1 Nothing selected > select add #1.3 9 pseudobonds, 2 models selected > label sel color darkblue > select clear > label sel color darkblue height 0.3 offset 1,1,1 > select add #1.3 9 pseudobonds, 2 models selected > label sel color darkblue height 0.3 offset 1,1,1 > select clear > surface showPatches /e > surface /e color tan transparency 80 > select clear > ui tool show Registration Window position QRect(0,1010 575x313) outside any known screen, using primary screen QDockWidget failed to find relevant screen info. screenFrom: QScreen(0x60000171fb00, name=""LG HDR WQHD"") screenTo: QScreen(0x60000171fb00, name=""LG HDR WQHD"") wdgScreen: QScreen(0x60000171fb00, name=""LG HDR WQHD"") orgWdgScreen QScreen(0x0) [Repeated 61 time(s)] > ui tool show Updates Errors may have occurred when running pip: pip standard error: \--- [notice] A new release of pip available: 22.2.2 -> 23.0 [notice] To update, run: /Applications/ChimeraX.app/Contents/MacOS/ChimeraX -m pip install --upgrade pip \--- pip standard output: \--- Looking in indexes: https://pypi.org/simple, https://cxtoolshed.rbvi.ucsf.edu/pypi/ Collecting ChimeraX-AddH==2.1.3 Using cached https://cxtoolshed.rbvi.ucsf.edu/media/chimeraxaddh/releases/2.1.3/ChimeraX_AddH-2.1.3-py3-none- any.whl (30 kB) Collecting ChimeraX-HKCage==1.3 Using cached https://cxtoolshed.rbvi.ucsf.edu/media/chimeraxhkcage/releases/1.3/ChimeraX_HKCage-1.3-py3-none- any.whl (8.4 kB) Installing collected packages: ChimeraX-HKCage, ChimeraX-AddH Successfully installed ChimeraX-AddH-2.1.3 ChimeraX-HKCage-1.3 \--- Successfully installed ChimeraX-AddH-2.1.3 ChimeraX-HKCage-1.3 Installed ChimeraX-AddH (2.1.3) Installed ChimeraX-HKCage (1.3) > toolshed show Downloading bundle ChimeraX_ISOLDE-1.5-cp39-cp39-macosx_10_13_universal2.whl [Repeated 1 time(s)] > pip install Can't possibly install an unspecified package. > pip install > /Users/ich/Downloads/ChimeraX_ISOLDE-1.5-cp39-cp39-macosx_10_13_universal2.whl Can't install package: invalid requirement specified. > ui tool show Shell Downloading bundle ChimeraX_StarMap-1.1.70-py3-none-any.whl Errors may have occurred when running pip: pip standard error: \--- [notice] A new release of pip available: 22.2.2 -> 23.0 [notice] To update, run: /Applications/ChimeraX.app/Contents/MacOS/ChimeraX -m pip install --upgrade pip \--- pip standard output: \--- Looking in indexes: https://pypi.org/simple, https://cxtoolshed.rbvi.ucsf.edu/pypi/ Processing /Users/ich/Downloads/ChimeraX_StarMap-1.1.70-py3-none-any.whl Requirement already satisfied: ChimeraX-Core>=1.4 in /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from ChimeraX-StarMap==1.1.70) (1.5) Requirement already satisfied: pyparsing in /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from ChimeraX-StarMap==1.1.70) (3.0.9) Collecting pyqtgraph Downloading pyqtgraph-0.13.1-py3-none-any.whl (966 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 966.1/966.1 kB 1.7 MB/s eta 0:00:00 Requirement already satisfied: numpy>=1.20.0 in /Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from pyqtgraph->ChimeraX-StarMap==1.1.70) (1.23.1) Installing collected packages: pyqtgraph, ChimeraX-StarMap Successfully installed ChimeraX-StarMap-1.1.70 pyqtgraph-0.13.1 \--- Successfully installed ChimeraX-StarMap-1.1.70 pyqtgraph-0.13.1 Installed ChimeraX-StarMap (1.1.70) > open > /Users/ich/Downloads/ChimeraX_ISOLDE-1.5-cp39-cp39-macosx_10_13_universal2.whl Unrecognized file suffix '.whl' > open > /Users/ich/Downloads/ChimeraX_ISOLDE-1.5-cp39-cp39-macosx_10_13_universal2.whl Unrecognized file suffix '.whl' Downloading bundle ChimeraX_ISOLDE-1.5-cp39-cp39-macosx_10_13_universal2.whl [Repeated 3 time(s)] > pip install > /Users/ich/Downloads/ChimeraX_ISOLDE-1.5-cp39-cp39-macosx_10_13_universal2.whl Can't install package: invalid requirement specified. Downloading bundle ChimeraX_ISOLDE-1.5-cp39-cp39-macosx_10_13_universal2.whl > set bgColor black > set bgColor white Downloading bundle ChimeraX_ISOLDE-1.5-cp39-cp39-macosx_10_13_universal2.whl [Repeated 1 time(s)] OpenGL version: 4.1 ATI-4.9.51 OpenGL renderer: AMD Radeon Pro 5500M OpenGL Engine OpenGL vendor: ATI Technologies Inc. Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.3.1, Qt 6.3.1 Qt runtime version: 6.3.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro16,1 Processor Name: 8-Core Intel Core i9 Processor Speed: 2.3 GHz Number of Processors: 1 Total Number of Cores: 8 L2 Cache (per Core): 256 KB L3 Cache: 16 MB Hyper-Threading Technology: Enabled Memory: 16 GB System Firmware Version: 1916.80.2.0.0 (iBridge: 20.16.3045.0.0,0) OS Loader Version: 564.40.4~66 Software: System Software Overview: System Version: macOS 13.2 (22D49) Kernel Version: Darwin 22.3.0 Time since boot: 18 days, 15 hours, 10 minutes Graphics/Displays: Intel UHD Graphics 630: Chipset Model: Intel UHD Graphics 630 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x3e9b Revision ID: 0x0002 Automatic Graphics Switching: Supported gMux Version: 5.0.0 Metal Support: Metal 3 AMD Radeon Pro 5500M: Chipset Model: AMD Radeon Pro 5500M Type: GPU Bus: PCIe PCIe Lane Width: x16 VRAM (Total): 4 GB Vendor: AMD (0x1002) Device ID: 0x7340 Revision ID: 0x0040 ROM Revision: 113-D3220E-190 VBIOS Version: 113-D32206U1-020 Option ROM Version: 113-D32206U1-020 EFI Driver Version: 01.A1.190 Automatic Graphics Switching: Supported gMux Version: 5.0.0 Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 3072 x 1920 Retina Framebuffer Depth: 30-Bit Color (ARGB2101010) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal LG HDR WQHD: Resolution: 3440 x 1440 (UWQHD - Ultra-Wide Quad HD) UI Looks like: 3440 x 1440 @ 60.00Hz Framebuffer Depth: 30-Bit Color (ARGB2101010) Display Serial Number: 111NTJJ17772 Mirror: Off Online: Yes Rotation: Supported Adapter Type: DVI or HDMI Adapter Firmware Version: ff.c1 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.1.0 Babel: 2.11.0 backcall: 0.2.0 blockdiag: 3.0.0 build: 0.8.0 certifi: 2021.10.8 cftime: 1.6.2 charset-normalizer: 2.1.1 ChimeraX-AddCharge: 1.4 ChimeraX-AddH: 2.1.3 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2.1 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.6 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.41.5 ChimeraX-AtomicLibrary: 8.0.3 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.7.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.1 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.2 ChimeraX-CommandLine: 1.2.4 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.5 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.1 ChimeraX-DistMonitor: 1.3 ChimeraX-DockPrep: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.2 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.2 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.1 ChimeraX-MatchMaker: 2.0.9 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.8 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.6 ChimeraX-ModelPanel: 1.3.6 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.1 ChimeraX-MouseModes: 1.1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.9.1 ChimeraX-PDB: 2.6.8 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.7.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StarMap: 1.1.70 ChimeraX-StdCommands: 1.10 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.1.3 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.24.3 ChimeraX-uniprot: 2.2.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.1.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.1 ChimeraX-WebServices: 1.1.0 ChimeraX-Zone: 1.0.1 colorama: 0.4.5 cxservices: 1.2 cycler: 0.11.0 Cython: 0.29.32 debugpy: 1.6.4 decorator: 5.1.1 docutils: 0.19 entrypoints: 0.4 executing: 1.2.0 filelock: 3.7.1 fonttools: 4.38.0 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.7.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.33 imagecodecs: 2022.7.31 imagesize: 1.4.1 importlib-metadata: 5.1.0 ipykernel: 6.15.3 ipython: 8.4.0 ipython-genutils: 0.2.0 jedi: 0.18.1 Jinja2: 3.1.2 jupyter-client: 7.3.4 jupyter-core: 5.1.0 kiwisolver: 1.4.4 line-profiler: 3.5.1 lxml: 4.9.1 lz4: 4.0.2 MarkupSafe: 2.1.1 matplotlib: 3.5.2 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.0 networkx: 2.8.5 numexpr: 2.8.4 numpy: 1.23.1 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.2.0 pip: 22.2.2 pkginfo: 1.8.3 platformdirs: 2.5.4 prompt-toolkit: 3.0.33 psutil: 5.9.1 ptyprocess: 0.7.0 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.12.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 PyQt6-commercial: 6.3.1 PyQt6-Qt6: 6.3.2 PyQt6-sip: 13.4.0 PyQt6-WebEngine-commercial: 6.3.1 PyQt6-WebEngine-Qt6: 6.3.2 pyqtgraph: 0.13.1 python-dateutil: 2.8.2 pytz: 2022.6 pyzmq: 24.0.1 qtconsole: 5.3.1 QtPy: 2.3.0 RandomWords: 0.4.0 requests: 2.28.1 scipy: 1.9.0 setuptools: 65.1.1 setuptools-scm: 7.0.5 sfftk-rw: 0.7.2 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 5.1.1 sphinx-autodoc-typehints: 1.19.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 tables: 3.7.0 tifffile: 2022.7.31 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.2 traitlets: 5.3.0 typing-extensions: 4.4.0 urllib3: 1.26.13 wcwidth: 0.2.5 webcolors: 1.12 wheel: 0.37.1 wheel-filename: 1.4.1 zipp: 3.11.0 File attachment: SCR-20230214-n2k.png }}} [attachment:""SCR-20230214-n2k.png""] " defect assigned normal Tool Shed Greg Couch all ChimeraX