id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 8427 Unsupported scale factor (0.000000) detected on Display0 chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-13.1-arm64-arm-64bit ChimeraX Version: 1.6.dev202301280224 (2023-01-28 02:24:25 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Current thread 0x00000001f31e7a80 (most recent call first): File ""/private/var/folders/th/hvr39ggj7ws1fg_m600c2gnr0000gn/T/AppTranslocation/D2C65C2F-17D9-4D41-B50D-0327E361DEA4/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py"", line 284 in event_loop File ""/private/var/folders/th/hvr39ggj7ws1fg_m600c2gnr0000gn/T/AppTranslocation/D2C65C2F-17D9-4D41-B50D-0327E361DEA4/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 892 in init File ""/private/var/folders/th/hvr39ggj7ws1fg_m600c2gnr0000gn/T/AppTranslocation/D2C65C2F-17D9-4D41-B50D-0327E361DEA4/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 1043 in File ""/private/var/folders/th/hvr39ggj7ws1fg_m600c2gnr0000gn/T/AppTranslocation/D2C65C2F-17D9-4D41-B50D-0327E361DEA4/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 87 in _run_code File ""/private/var/folders/th/hvr39ggj7ws1fg_m600c2gnr0000gn/T/AppTranslocation/D2C65C2F-17D9-4D41-B50D-0327E361DEA4/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 197 in _run_module_as_main {""app_name"":""ChimeraX"",""timestamp"":""2023-02-02 00:50:34.00 -0800"",""app_version"":""1.6.0"",""slice_uuid"":""a5992708-d5b4-36ec-ac0a-e525f6105b56"",""build_version"":""1.6.0.0"",""platform"":1,""bundleID"":""edu.ucsf.cgl.ChimeraX"",""share_with_app_devs"":1,""is_first_party"":0,""bug_type"":""309"",""os_version"":""macOS 13.1 (22C65)"",""roots_installed"":0,""name"":""ChimeraX"",""incident_id"":""AEC385BD-77C3-4BCE-9FC6-7251027158EF""} { ""uptime"" : 120000, ""procRole"" : ""Background"", ""version"" : 2, ""userID"" : 501, ""deployVersion"" : 210, ""modelCode"" : ""MacBookPro18,1"", ""coalitionID"" : 5997, ""osVersion"" : { ""train"" : ""macOS 13.1"", ""build"" : ""22C65"", ""releaseType"" : ""User"" }, ""captureTime"" : ""2023-02-02 00:50:27.9925 -0800"", ""incident"" : ""AEC385BD-77C3-4BCE-9FC6-7251027158EF"", ""pid"" : 15946, ""translated"" : false, ""cpuType"" : ""ARM-64"", ""roots_installed"" : 0, ""bug_type"" : ""309"", ""procLaunch"" : ""2023-02-01 22:50:12.5413 -0800"", ""procStartAbsTime"" : 2724164512710, ""procExitAbsTime"" : 2897329583713, ""procName"" : ""ChimeraX"", ""procPath"" : ""\/Volumes\/VOLUME\/*\/ChimeraX_Daily.app\/Contents\/MacOS\/ChimeraX"", ""bundleInfo"" : {""CFBundleShortVersionString"":""1.6.0"",""CFBundleVersion"":""1.6.0.0"",""CFBundleIdentifier"":""edu.ucsf.cgl.ChimeraX""}, ""storeInfo"" : {""deviceIdentifierForVendor"":""F912F92E-CA30-569F-B04C-03ED65D3E610"",""thirdParty"":true}, ""parentProc"" : ""launchd"", ""parentPid"" : 1, ""coalitionName"" : ""edu.ucsf.cgl.ChimeraX"", ""crashReporterKey"" : ""0E87F8DE-9969-30DB-F909-D0E1A2D30D1C"", ""throttleTimeout"" : 2147483647, ""wakeTime"" : 7956, ""sleepWakeUUID"" : ""EF00D03D-E3C7-4CAF-99D0-39E732C95448"", ""sip"" : ""enabled"", ""vmRegionInfo"" : ""0x18 is not in any region. 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""P"", ""arch"" : ""arm64"", ""base"" : 4351295488, ""size"" : 20709376, ""uuid"" : ""6b8373ed-7142-34ea-9b4b-9f502e8a6f33"", ""path"" : ""\/Volumes\/VOLUME\/*\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib"", ""name"" : ""libopenblas64_.0.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 5701337088, ""size"" : 154746880, ""uuid"" : ""3bb8485a-3fbc-3d6e-81e9-c7f5635b6909"", ""path"" : ""\/Volumes\/VOLUME\/*\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineCore.framework\/Versions\/A\/QtWebEngineCore"", ""name"" : ""QtWebEngineCore"" }, { ""size"" : 0, ""source"" : ""A"", ""base"" : 0, ""uuid"" : ""00000000-0000-0000-0000-000000000000"" } ], ""vmSummary"" : ""ReadOnly portion of Libraries: Total=1.6G resident=0K(0%) swapped_out_or_unallocated=1.6G(100%)\nWritable regions: Total=2.6G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.6G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 384K 3 \nActivity Tracing 256K 1 \nCG backing stores 3904K 8 \nCG image 752K 33 \nColorSync 560K 28 \nCoreAnimation 336K 21 \nCoreGraphics 48K 3 \nCoreUI image data 4544K 33 \nFoundation 48K 2 \nKernel Alloc Once 32K 1 \nMALLOC 622.3M 299 \nMALLOC guard page 192K 11 \nMALLOC_MEDIUM (reserved) 1.1G 10 reserved VM address space (unallocated)\nMALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)\nMach message 64K 2 \nOpenGL GLSL 384K 4 \nSTACK GUARD 528K 33 \nStack 152.8M 34 \nStack Guard 56.0M 1 \nVM_ALLOCATE 162.6M 332 \nVM_ALLOCATE (reserved) 224.0M 3 reserved VM address space (unallocated)\n__AUTH 1933K 360 \n__AUTH_CONST 24.8M 588 \n__CTF 756 1 \n__DATA 19.9M 717 \n__DATA_CONST 37.6M 726 \n__DATA_DIRTY 1983K 229 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__LINKEDIT 794.3M 137 \n__OBJC_CONST 4752K 325 \n__OBJC_RO 65.4M 1 \n__OBJC_RW 1986K 1 \n__TEXT 819.6M 747 \ndyld private memory 256K 1 \nmapped file 516.2M 80 \nshared memory 3264K 32 \n=========== ======= ======= \nTOTAL 4.9G 4810 \nTOTAL, minus reserved VM space 3.2G 4810 \n"", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""61fd92db295c182621ececc3"", ""factorPackIds"" : { }, ""deploymentId"" : 240000247 }, { ""rolloutId"" : ""62fe74515312cd4599bd3c80"", ""factorPackIds"" : { ""MYRIAD_BOOSTS"" : ""62fe74805312cd4599bd3c81"" }, ""deploymentId"" : 240000006 } ], ""experiments"" : [ ] }, ""reportNotes"" : [ ""dyld_process_snapshot_create_for_process failed with 5"" ] } ===== Log before crash start ===== UCSF ChimeraX version: 1.6.dev202301280224 (2023-01-28) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/minhanhpham/Downloads/PAPA1_CARPA_cut.eq.1.pdb format pdb Chain information for PAPA1_CARPA_cut.eq.1.pdb #1 --- Chain | Description A | No description available > open > /Users/minhanhpham/Downloads/protein_28_928d3.result/protein_28_928d3_unrelaxed_rank_1_model_3.pdb Chain information for protein_28_928d3_unrelaxed_rank_1_model_3.pdb #2 --- Chain | Description A | No description available > ui tool show Matchmaker > matchmaker #2 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker PAPA1_CARPA_cut.eq.1.pdb, chain A (#1) with protein_28_928d3_unrelaxed_rank_1_model_3.pdb, chain A (#2), sequence alignment score = 624.1 RMSD between 190 pruned atom pairs is 0.928 angstroms; (across all 208 pairs: 1.729) > ui tool show ""Show Sequence Viewer"" > sequence chain #1/A Alignment identifier is 1/A > sequence chain #2/A Alignment identifier is 2/A > select #2/A:361 5 atoms, 4 bonds, 1 residue, 1 model selected > select #2/A:355-361 51 atoms, 52 bonds, 7 residues, 1 model selected > select #2/A:361 5 atoms, 4 bonds, 1 residue, 1 model selected > select #2/A:354-361 57 atoms, 58 bonds, 8 residues, 1 model selected > select #1/A:212 15 atoms, 14 bonds, 1 residue, 1 model selected > select #1/A:204-212 144 atoms, 146 bonds, 9 residues, 1 model selected > select #1/A:212 15 atoms, 14 bonds, 1 residue, 1 model selected > select #1/A:205-212 130 atoms, 132 bonds, 8 residues, 1 model selected > select #1/A:25-42,52,53-56,68-77,97,118-127,139-142,199-201 785 atoms, 787 bonds, 51 residues, 1 model selected > select #1/A:25 10 atoms, 9 bonds, 1 residue, 1 model selected > select #1/A:25-37 191 atoms, 193 bonds, 13 residues, 1 model selected > select #1/A:42-43 21 atoms, 20 bonds, 2 residues, 1 model selected > select #1/A:38-43 105 atoms, 104 bonds, 6 residues, 1 model selected > select #1/A:25-42,52,53-56,68-77,97,118-127,139-142,199-201 785 atoms, 787 bonds, 51 residues, 1 model selected > select #1/A:42 14 atoms, 13 bonds, 1 residue, 1 model selected > select #1/A:25-42 289 atoms, 291 bonds, 18 residues, 1 model selected > select #1/A:25-42,52,53-56,68-77,97,118-127,139-142,199-201 785 atoms, 787 bonds, 51 residues, 1 model selected > select #1/A:42 14 atoms, 13 bonds, 1 residue, 1 model selected > select #1/A:25-42 289 atoms, 291 bonds, 18 residues, 1 model selected > color sel red > select #1/A:25-42,52,53-56,68-77,97,118-127,139-142,199-201 785 atoms, 787 bonds, 51 residues, 1 model selected > select #1/A:56-57 22 atoms, 21 bonds, 2 residues, 1 model selected > select #1/A:53-57 72 atoms, 71 bonds, 5 residues, 1 model selected > select #1/A:25-42,52,53-56,68-77,97,118-127,139-142,199-201 785 atoms, 787 bonds, 51 residues, 1 model selected > select #1/A:52 15 atoms, 14 bonds, 1 residue, 1 model selected > select #1/A:52,53-56,97 90 atoms, 89 bonds, 6 residues, 1 model selected > select #1/A:25-42,52,53-56,68-77,97,118-127,139-142,199-201 785 atoms, 787 bonds, 51 residues, 1 model selected > select #1/A:77-78 38 atoms, 38 bonds, 2 residues, 1 model selected > select #1/A:76-78 48 atoms, 48 bonds, 3 residues, 1 model selected > select #1/A:77 17 atoms, 16 bonds, 1 residue, 1 model selected > select #1/A:68-77 157 atoms, 159 bonds, 10 residues, 1 model selected > select #1/A:25-42,52,53-56,68-77,97,118-127,139-142,199-201 785 atoms, 787 bonds, 51 residues, 1 model selected > select #1/A:77 17 atoms, 16 bonds, 1 residue, 1 model selected > select #1/A:68-77 157 atoms, 159 bonds, 10 residues, 1 model selected > select #1/A:25-42,52,53-56,68-77,97,118-127,139-142,199-201 785 atoms, 787 bonds, 51 residues, 1 model selected > select #1/A:127 14 atoms, 13 bonds, 1 residue, 1 model selected > select #1/A:118-127 145 atoms, 145 bonds, 10 residues, 1 model selected > select #1/A:25-42,52,53-56,68-77,97,118-127,139-142,199-201 785 atoms, 787 bonds, 51 residues, 1 model selected > select #1/A:142 17 atoms, 16 bonds, 1 residue, 1 model selected > select #1/A:139-142 71 atoms, 71 bonds, 4 residues, 1 model selected > select #1/A:25-42,52,53-56,68-77,97,118-127,139-142,199-201 785 atoms, 787 bonds, 51 residues, 1 model selected > select #1/A:199 16 atoms, 15 bonds, 1 residue, 1 model selected > select #1/A:199-201 33 atoms, 32 bonds, 3 residues, 1 model selected > select #1/A:25-42,52,53-56,68-77,97,118-127,139-142,199-201 785 atoms, 787 bonds, 51 residues, 1 model selected > select #1/A:56 10 atoms, 9 bonds, 1 residue, 1 model selected > select #1/A:52,53-56,97 90 atoms, 89 bonds, 6 residues, 1 model selected > select #1/A:77-78 38 atoms, 38 bonds, 2 residues, 1 model selected > select #1/A:76-78 48 atoms, 48 bonds, 3 residues, 1 model selected > select #1/A:109-112,130-134,159-166,170-174,186-190,207-210 526 atoms, 527 bonds, 31 residues, 1 model selected > select #1/A:25-42,52,53-56,68-77,97,118-127,139-142,199-201 785 atoms, 787 bonds, 51 residues, 1 model selected > select #1/A:77 17 atoms, 16 bonds, 1 residue, 1 model selected > select #1/A:68-77 157 atoms, 159 bonds, 10 residues, 1 model selected > select #1/A:127 14 atoms, 13 bonds, 1 residue, 1 model selected > select #1/A:118-127 145 atoms, 145 bonds, 10 residues, 1 model selected > select #1/A:142 17 atoms, 16 bonds, 1 residue, 1 model selected > select #1/A:139-142 71 atoms, 71 bonds, 4 residues, 1 model selected > select #1/A:199 16 atoms, 15 bonds, 1 residue, 1 model selected > select #1/A:199-201 33 atoms, 32 bonds, 3 residues, 1 model selected > select #1/A:109-112,130-134,159-166,170-174,186-190,207-210 526 atoms, 527 bonds, 31 residues, 1 model selected > select #1/A:112 17 atoms, 16 bonds, 1 residue, 1 model selected > select #1/A:109-112 64 atoms, 63 bonds, 4 residues, 1 model selected > select #1/A:109-112,130-134,159-166,170-174,186-190,207-210 526 atoms, 527 bonds, 31 residues, 1 model selected > select #1/A:134 19 atoms, 18 bonds, 1 residue, 1 model selected > select #1/A:130-134 78 atoms, 77 bonds, 5 residues, 1 model selected > select #1/A:109-112,130-134,159-166,170-174,186-190,207-210 526 atoms, 527 bonds, 31 residues, 1 model selected > select #1/A:134 19 atoms, 18 bonds, 1 residue, 1 model selected > select #1/A:130-134 78 atoms, 77 bonds, 5 residues, 1 model selected > select #1/A:109-112,130-134,159-166,170-174,186-190,207-210 526 atoms, 527 bonds, 31 residues, 1 model selected > select #1/A:166 21 atoms, 21 bonds, 1 residue, 1 model selected > select #1/A:159-166 108 atoms, 109 bonds, 8 residues, 1 model selected > select #1/A:109-112,130-134,159-166,170-174,186-190,207-210 526 atoms, 527 bonds, 31 residues, 1 model selected > select #1/A:166 21 atoms, 21 bonds, 1 residue, 1 model selected > select #1/A:159-166 108 atoms, 109 bonds, 8 residues, 1 model selected > select #1/A:174 22 atoms, 21 bonds, 1 residue, 1 model selected > select #1/A:170-174 100 atoms, 100 bonds, 5 residues, 1 model selected > select #1/A:190 22 atoms, 21 bonds, 1 residue, 1 model selected > select #1/A:186-190 105 atoms, 105 bonds, 5 residues, 1 model selected > select #1/A:174 22 atoms, 21 bonds, 1 residue, 1 model selected > select #1/A:170-174 100 atoms, 100 bonds, 5 residues, 1 model selected > select #1/A:190 22 atoms, 21 bonds, 1 residue, 1 model selected > select #1/A:188-190 65 atoms, 64 bonds, 3 residues, 1 model selected > select #1/A:25-42,52,53-56,68-77,97,118-127,139-142,199-201 785 atoms, 787 bonds, 51 residues, 1 model selected > select #1/A:109-112,130-134,159-166,170-174,186-190,207-210 526 atoms, 527 bonds, 31 residues, 1 model selected > select #1/A:190 22 atoms, 21 bonds, 1 residue, 1 model selected > select #1/A:186-190 105 atoms, 105 bonds, 5 residues, 1 model selected > select #1/A:210 16 atoms, 15 bonds, 1 residue, 1 model selected > select #1/A:207-210 71 atoms, 73 bonds, 4 residues, 1 model selected > select #1/A:112 17 atoms, 16 bonds, 1 residue, 1 model selected > select #1/A:109-112 64 atoms, 63 bonds, 4 residues, 1 model selected > select #1/A:134 19 atoms, 18 bonds, 1 residue, 1 model selected > select #1/A:130-134 78 atoms, 77 bonds, 5 residues, 1 model selected > select #1/A:166 21 atoms, 21 bonds, 1 residue, 1 model selected > select #1/A:159-166 108 atoms, 109 bonds, 8 residues, 1 model selected > select #1/A:174 22 atoms, 21 bonds, 1 residue, 1 model selected > select #1/A:171-174 79 atoms, 78 bonds, 4 residues, 1 model selected > select #1/A:109-112,130-134,159-166,170-174,186-190,207-210 526 atoms, 527 bonds, 31 residues, 1 model selected > select #1/A:174 22 atoms, 21 bonds, 1 residue, 1 model selected > select #1/A:170-174 100 atoms, 100 bonds, 5 residues, 1 model selected > select #1/A:109-112,130-134,159-166,170-174,186-190,207-210 526 atoms, 527 bonds, 31 residues, 1 model selected > select #1/A:25-42,52,53-56,68-77,97,118-127,139-142,199-201 785 atoms, 787 bonds, 51 residues, 1 model selected > select #1/A:109-112,130-134,159-166,170-174,186-190,207-210 526 atoms, 527 bonds, 31 residues, 1 model selected > select #1/A:174 22 atoms, 21 bonds, 1 residue, 1 model selected > select #1/A:170-174 100 atoms, 100 bonds, 5 residues, 1 model selected > select #1/A:109-112,130-134,159-166,170-174,186-190,207-210 526 atoms, 527 bonds, 31 residues, 1 model selected > select #1/A:190 22 atoms, 21 bonds, 1 residue, 1 model selected > select #1/A:186-190 105 atoms, 105 bonds, 5 residues, 1 model selected > select #1/A:210 16 atoms, 15 bonds, 1 residue, 1 model selected > select #1/A:207-210 71 atoms, 73 bonds, 4 residues, 1 model selected > select > #2/A:42-69,76-98,116-123,172-189,197-203,210-212,216-226,263-270,284-287,349-351 896 atoms, 905 bonds, 113 residues, 1 model selected > select #2/A:104-106,254-257,275-279,289-292,304-313,319-324,336-340,357-360 331 atoms, 334 bonds, 41 residues, 1 model selected > select #2/A:106 8 atoms, 7 bonds, 1 residue, 1 model selected > select #2/A:104-106 27 atoms, 27 bonds, 3 residues, 1 model selected > select #1/A:1-2 35 atoms, 35 bonds, 2 residues, 1 model selected > select #1/A:1-2 35 atoms, 35 bonds, 2 residues, 1 model selected > select #2/A:1-2 16 atoms, 15 bonds, 2 residues, 1 model selected > select #2/A:1-2 16 atoms, 15 bonds, 2 residues, 1 model selected > select #2/A:1-2 16 atoms, 15 bonds, 2 residues, 1 model selected > select #2/A:1-2 16 atoms, 15 bonds, 2 residues, 1 model selected > select #2/A:1 8 atoms, 7 bonds, 1 residue, 1 model selected > select #2/A:1 8 atoms, 7 bonds, 1 residue, 1 model selected > select #2/A:2-3 16 atoms, 15 bonds, 2 residues, 1 model selected > select #2/A:1-3 24 atoms, 23 bonds, 3 residues, 1 model selected > select #2/A:361 5 atoms, 4 bonds, 1 residue, 1 model selected > select #2/A:360-361 12 atoms, 11 bonds, 2 residues, 1 model selected > select #2/A:361 5 atoms, 4 bonds, 1 residue, 1 model selected > select #2/A:357-361 37 atoms, 38 bonds, 5 residues, 1 model selected > select #1/A:212 15 atoms, 14 bonds, 1 residue, 1 model selected > select #1/A:209-212 67 atoms, 67 bonds, 4 residues, 1 model selected > select #1/A:25-42,52,53-56,68-77,97,118-127,139-142,199-201 785 atoms, 787 bonds, 51 residues, 1 model selected > select #1/A:25 10 atoms, 9 bonds, 1 residue, 1 model selected > select #1/A:25 10 atoms, 9 bonds, 1 residue, 1 model selected > select #1/A:25,159 28 atoms, 27 bonds, 2 residues, 1 model selected > select #1/A:25,159,195 42 atoms, 40 bonds, 3 residues, 1 model selected > select #1/A:25 10 atoms, 9 bonds, 1 residue, 1 model selected > select #1/A:25 10 atoms, 9 bonds, 1 residue, 1 model selected > select #1/A:25,159 28 atoms, 27 bonds, 2 residues, 1 model selected > select #1/A:25,159,175 42 atoms, 40 bonds, 3 residues, 1 model selected > show sel atoms > style sel sphere Changed 42 atom styles > show sel atoms > style sel sphere Changed 42 atom styles > style sel stick Changed 42 atom styles Unsupported scale factor (0.000000) detected on Display0 QPainter::begin: Paint device returned engine == 0, type: 3 ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.6.dev202301280224 (2023-01-28) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 83 OpenGL renderer: Apple M1 Pro OpenGL vendor: Apple Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.4.0, Qt 6.4.0 Qt runtime version: 6.4.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro18,1 Model Number: MK193LL/A Chip: Apple M1 Pro Total Number of Cores: 10 (8 performance and 2 efficiency) Memory: 16 GB System Firmware Version: 8419.60.44 OS Loader Version: 8419.60.44 Software: System Software Overview: System Version: macOS 13.1 (22C65) Kernel Version: Darwin 22.2.0 Time since boot: 3 days, 23 hours, 10 minutes Graphics/Displays: Apple M1 Pro: Chipset Model: Apple M1 Pro Type: GPU Bus: Built-In Total Number of Cores: 16 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-in Liquid Retina XDR Display Resolution: 3456 x 2234 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal DELL S2419NX: Resolution: 1920 x 1080 (1080p FHD - Full High Definition) UI Looks like: 1920 x 1080 @ 60.00Hz Mirror: Off Online: Yes Rotation: Supported Installed Packages: alabaster: 0.7.13 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.2.1 Babel: 2.11.0 backcall: 0.2.0 blockdiag: 3.0.0 build: 0.8.0 certifi: 2021.10.8 cftime: 1.6.2 charset-normalizer: 2.1.1 ChimeraX-AddCharge: 1.5.8 ChimeraX-AddH: 2.2.3 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.3.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.8 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.43.7 ChimeraX-AtomicLibrary: 10.0.3 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3.2 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.7.2 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.1 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.2 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3.1 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.3 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.6.dev202301280224 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.4.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.1 ChimeraX-DistMonitor: 1.3.3 ChimeraX-DockPrep: 1.1 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.2.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.0.11 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.11 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.8 ChimeraX-ModelPanel: 1.3.6 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.10 ChimeraX-PDB: 2.6.13 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.0 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 3.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.1 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.8.1 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Topography: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.26 ChimeraX-uniprot: 2.2.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.1.6 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.1 ChimeraX-Zone: 1.0.1 colorama: 0.4.5 comm: 0.1.2 contourpy: 1.0.7 cxservices: 1.2.2 cycler: 0.11.0 Cython: 0.29.32 debugpy: 1.6.6 decorator: 5.1.1 docutils: 0.19 entrypoints: 0.4 executing: 1.2.0 filelock: 3.7.1 fonttools: 4.38.0 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.8.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.35 imagecodecs: 2022.2.22 imagesize: 1.4.1 importlib-metadata: 6.0.0 ipykernel: 6.19.2 ipython: 8.7.0 ipython-genutils: 0.2.0 jedi: 0.18.2 Jinja2: 3.1.2 jupyter-client: 7.4.8 jupyter-core: 5.1.5 kiwisolver: 1.4.4 line-profiler: 3.5.1 lxml: 4.9.1 lz4: 4.0.2 MarkupSafe: 2.1.2 matplotlib: 3.6.2 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.0 networkx: 2.8.8 numexpr: 2.8.4 numpy: 1.23.5 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.3.0 pip: 22.2.2 pkginfo: 1.8.3 platformdirs: 2.6.2 prompt-toolkit: 3.0.36 psutil: 5.9.4 ptyprocess: 0.7.0 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.12.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 PyQt6-commercial: 6.4.0 PyQt6-Qt6: 6.4.2 PyQt6-sip: 13.4.0 PyQt6-WebEngine-commercial: 6.4.0 PyQt6-WebEngine-Qt6: 6.4.2 python-dateutil: 2.8.2 pytz: 2022.7.1 pyzmq: 25.0.0 qtconsole: 5.4.0 QtPy: 2.3.0 RandomWords: 0.4.0 requests: 2.28.1 scipy: 1.9.3 setuptools: 65.1.1 setuptools-scm: 7.0.5 sfftk-rw: 0.7.3 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 5.1.1 sphinx-autodoc-typehints: 1.19.1 sphinxcontrib-applehelp: 1.0.4 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 tables: 3.7.0 tifffile: 2022.10.10 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.2 traitlets: 5.8.0 typing-extensions: 4.4.0 urllib3: 1.26.14 wcwidth: 0.2.6 webcolors: 1.12 wheel: 0.37.1 wheel-filename: 1.4.1 zipp: 3.12.0 }}} " defect closed normal Window Toolkit can't reproduce Tom Goddard all ChimeraX