id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 8198 Index Error: list index out of range kristen.browne@… Eric Pettersen "{{{ Using most recent NIH 3D preset The attached is failing in NIH 3D with the following logs: ... File ""/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-packages/chimerax/hbonds/hbond.py"", line 603, in find_hbonds if not geom_func(donor_atom, donor_hyds, *args): File ""/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-packages/chimerax/hbonds/acceptor_geom.py"", line 115, in acc_theta_tau up_pos = bisectors[0] IndexError: list index out of range During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 747, in init run(sess, 'runscript %s' % script) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-packages/chimerax/core/commands/run.py"", line 38, in run results = command.run(text, log=log, return_json=return_json) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-packages/chimerax/core/commands/cli.py"", line 2897, in run result = ci.function(session, **kw_args) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-packages/chimerax/core/commands/runscript.py"", line 38, in runscript open_python_script(session, open(script_file, 'rb'), script_file, argv=argv) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-packages/chimerax/core/scripting.py"", line 90, in open_python_script raise UserError('Error opening python file %s' % stream.name) chimerax.core.errors.UserError: Error opening python file /usr/local/lib/python3.9/site-packages/nih_3d_workflows/flows/chimerax_flow/chimera_x_scripts/cx_unified.py Command failed with exit code 70 Kristen Browne, MSc, MscBMC Contractor - MSC, Inc. | A Guidehouse Company 3D Modeling and Biovisualization Specialist Bioinformatics and Computational Biosciences Branch (BCBB) OCICB/OSMO/OD/NIAID/NIH 5601 Fishers Lane, Room 4A60 Rockville, MD 20852 Office 202-253-5228 }}} [attachment:""HAG1.pdb""] " defect closed normal Structure Analysis fixed phil.cruz@… michal.stolarczyk@… all ChimeraX