id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 8194 chimerax.build_structure.bond.CreateBondError: Must specify two or more atoms kristen.browne@… Eric Pettersen "{{{ Since switching to the new presets have started seeing this error come up. This was for PDB 2JTN. I just extracted the part of the logs around the error, let me know if you would like more. Opened 1 biological assemblies for 2JTN STATUS: Opened 1 biological assemblies for 2JTN NIH3D INFO: HEAVY ATOM MASS: 0.1 kDa INFO: Executing: ~bond #1 INFO: Executing: bond #1 ERROR: Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-packages/chimerax/build_structure/cmd.py"", line 20, in cmd_bondcreated = create_bonds(*args, **kw) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.9/site-packages/chimerax/build_structure/bond.py"", line 27, in create_bonds raise CreateBondError(""Must specify two or more atoms"") chimerax.build_structure.bond.CreateBondError: Must specify two or more atoms Kristen Browne, MSc, MscBMC Contractor - MSC, Inc. | A Guidehouse Company 3D Modeling and Biovisualization Specialist Bioinformatics and Computational Biosciences Branch (BCBB) OCICB/OSMO/OD/NIAID/NIH 5601 Fishers Lane, Room 4A60 Rockville, MD 20852 Office 202-253-5228 }}} " defect closed normal Depiction fixed michal.stolarczyk@… all ChimeraX