id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 8085 Modeller target is None chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: Windows-10-10.0.19045 ChimeraX Version: 1.5rc202211171732 (2022-11-17 17:32:15 UTC) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 1.5rc202211171732 (2022-11-17) © 2016-2022 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open pdb:2ZVW format mmcif fromDatabase pdb 2zvw title: Crystal structure of Proliferating cell nuclear antigen 2 and Short peptide from human P21 [more info...] Chain information for 2zvw #1 --- Chain | Description | UniProt A B C D E F G H | Proliferating cell nuclear antigen 2 | PCNA2_ARATH I J K L M N O P | Cyclin-dependent kinase inhibitor 1 | CDN1A_HUMAN Non-standard residues in 2zvw #1 --- SO4 — sulfate ion 2zvw mmCIF Assemblies --- 1| author_and_software_defined_assembly 2| author_and_software_defined_assembly 3| author_and_software_defined_assembly 4| author_and_software_defined_assembly > close session > open D:\Downloads\LjPCNA1.fa format fasta Summary of feedback from opening D:\Downloads\LjPCNA1.fa --- note | Alignment identifier is LjPCNA1.fa Opened 1 sequences from LjPCNA1.fa > blastprotein LjPCNA1.fa:1 Webservices job id: HCI2GBQZ0D0L1U7P > open pdb:6O09 Summary of feedback from opening 6O09 fetched from pdb --- note | Fetching compressed mmCIF 6o09 from http://files.rcsb.org/download/6o09.cif 6o09 title: Structure of AtPCNA in complex with the PIP motif of ATXR6 [more info...] Chain information for 6o09 #1 --- Chain | Description | UniProt A C D F H K | Proliferating cellular nuclear antigen 1 | PCNA1_ARATH B E G I J L | Uncharacterized protein | K7MRE7_SOYBN 6o09 mmCIF Assemblies --- 1| author_and_software_defined_assembly 2| author_and_software_defined_assembly > select clear > close session > open D:\Downloads\LjPCNA1.fa format fasta Summary of feedback from opening D:\Downloads\LjPCNA1.fa --- note | Alignment identifier is LjPCNA1.fa Opened 1 sequences from LjPCNA1.fa > blastprotein LjPCNA1.fa:1 Webservices job id: HT5LGIFONB3A9JFX > open pdb:2ZVV Summary of feedback from opening 2ZVV fetched from pdb --- note | Fetching compressed mmCIF 2zvv from http://files.rcsb.org/download/2zvv.cif 2zvv title: Crystal structure of Proliferating cellular nuclear antigen 1 and Short peptide from human P21 [more info...] Chain information for 2zvv #1 --- Chain | Description | UniProt A B | Proliferating cellular nuclear antigen 1 | PCNA1_ARATH X Y | Cyclin-dependent kinase inhibitor 1 | CDN1A_HUMAN Non-standard residues in 2zvv #1 --- SO4 — sulfate ion 2zvv mmCIF Assemblies --- 1| author_and_software_defined_assembly 2| author_and_software_defined_assembly > select clear > close session > ui tool show ""Modeller Comparative"" No alignments chosen for modeling > open D:\Downloads\LjPCNA1.fa format fasta Summary of feedback from opening D:\Downloads\LjPCNA1.fa --- note | Alignment identifier is LjPCNA1.fa Opened 1 sequences from LjPCNA1.fa > open pdb:2ZVV format mmcif fromDatabase pdb 2zvv title: Crystal structure of Proliferating cellular nuclear antigen 1 and Short peptide from human P21 [more info...] Chain information for 2zvv #1 --- Chain | Description | UniProt A B | Proliferating cellular nuclear antigen 1 | PCNA1_ARATH X Y | Cyclin-dependent kinase inhibitor 1 | CDN1A_HUMAN Non-standard residues in 2zvv #1 --- SO4 — sulfate ion 2zvv mmCIF Assemblies --- 1| author_and_software_defined_assembly 2| author_and_software_defined_assembly > close session > ui tool show ""Modeller Comparative"" > open pdb:2ZVV format mmcif fromDatabase pdb 2zvv title: Crystal structure of Proliferating cellular nuclear antigen 1 and Short peptide from human P21 [more info...] Chain information for 2zvv #1 --- Chain | Description | UniProt A B | Proliferating cellular nuclear antigen 1 | PCNA1_ARATH X Y | Cyclin-dependent kinase inhibitor 1 | CDN1A_HUMAN Non-standard residues in 2zvv #1 --- SO4 — sulfate ion 2zvv mmCIF Assemblies --- 1| author_and_software_defined_assembly 2| author_and_software_defined_assembly > open pdb:2ZVV format mmcif fromDatabase pdb 2zvv title: Crystal structure of Proliferating cellular nuclear antigen 1 and Short peptide from human P21 [more info...] Chain information for 2zvv #2 --- Chain | Description | UniProt A B | Proliferating cellular nuclear antigen 1 | PCNA1_ARATH X Y | Cyclin-dependent kinase inhibitor 1 | CDN1A_HUMAN Non-standard residues in 2zvv #2 --- SO4 — sulfate ion 2zvv mmCIF Assemblies --- 1| author_and_software_defined_assembly 2| author_and_software_defined_assembly > open D:\Downloads\LjPCNA1.fa format fasta Summary of feedback from opening D:\Downloads\LjPCNA1.fa --- note | Alignment identifier is LjPCNA1.fa Opened 1 sequences from LjPCNA1.fa QWindowsWindow::setGeometry: Unable to set geometry 1920x1049+0+35 (frame: 1942x1105-11-10) on QWidgetWindow/""MainWindowClassWindow"" on ""\\\\.\DISPLAY1"". Resulting geometry: 1920x1046+0+34 (frame: 1942x1102-11-11) margins: 11, 45, 11, 11 minimum size: 511x699 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=0, y=0), mintrack=POINT(x=789, y=1105))) > open pdb:2ZVV format mmcif fromDatabase pdb 2zvv title: Crystal structure of Proliferating cellular nuclear antigen 1 and Short peptide from human P21 [more info...] Chain information for 2zvv #3 --- Chain | Description | UniProt A B | Proliferating cellular nuclear antigen 1 | PCNA1_ARATH X Y | Cyclin-dependent kinase inhibitor 1 | CDN1A_HUMAN Non-standard residues in 2zvv #3 --- SO4 — sulfate ion 2zvv mmCIF Assemblies --- 1| author_and_software_defined_assembly 2| author_and_software_defined_assembly > modeller comparative LjPCNA1.fa:1 numModels 5 fast false multichain true > hetPreserve false hydrogens false waterPreserve false Alignment LjPCNA1.fa has no associated chains > open pdb:2ZVV format mmcif fromDatabase pdb 2zvv title: Crystal structure of Proliferating cellular nuclear antigen 1 and Short peptide from human P21 [more info...] Chain information for 2zvv #4 --- Chain | Description | UniProt A B | Proliferating cellular nuclear antigen 1 | PCNA1_ARATH X Y | Cyclin-dependent kinase inhibitor 1 | CDN1A_HUMAN Non-standard residues in 2zvv #4 --- SO4 — sulfate ion 2zvv mmCIF Assemblies --- 1| author_and_software_defined_assembly 2| author_and_software_defined_assembly > open pdb:2ZVV format mmcif fromDatabase pdb 2zvv title: Crystal structure of Proliferating cellular nuclear antigen 1 and Short peptide from human P21 [more info...] Chain information for 2zvv #5 --- Chain | Description | UniProt A B | Proliferating cellular nuclear antigen 1 | PCNA1_ARATH X Y | Cyclin-dependent kinase inhibitor 1 | CDN1A_HUMAN Non-standard residues in 2zvv #5 --- SO4 — sulfate ion 2zvv mmCIF Assemblies --- 1| author_and_software_defined_assembly 2| author_and_software_defined_assembly > log metadata #5 Metadata for 2zvv #5 --- Title | Crystal structure of Proliferating cellular nuclear antigen 1 and Short peptide from human P21 Citation | Strzalka, W., Oyama, T., Tori, K., Morikawa, K. (2009). Crystal structures of the Arabidopsis thaliana proliferating cell nuclear antigen 1 and 2 proteins complexed with the human p21 C-terminal segment. Protein Sci., 18, 1072-1080. PMID: 19388052. DOI: 10.1002/pro.117 Non-standard residue | SO4 — sulfate ion Gene source | Arabidopsis thaliana (mouse-ear cress,thale-cress) Experimental method | X-ray diffraction Resolution | 2.00Å > open pdb:2ZVV format mmcif fromDatabase pdb 2zvv title: Crystal structure of Proliferating cellular nuclear antigen 1 and Short peptide from human P21 [more info...] Chain information for 2zvv #6 --- Chain | Description | UniProt A B | Proliferating cellular nuclear antigen 1 | PCNA1_ARATH X Y | Cyclin-dependent kinase inhibitor 1 | CDN1A_HUMAN Non-standard residues in 2zvv #6 --- SO4 — sulfate ion 2zvv mmCIF Assemblies --- 1| author_and_software_defined_assembly 2| author_and_software_defined_assembly > blastprotein LjPCNA1.fa:1 Webservices job id: YUN2VPZ9XRVOH884 Alignment identifier is bp3 [1] Associated 2zvv chain A to 2ZVV_A with 0 mismatches Associated 2zvv chain B to 2ZVV_A with 0 mismatches Associated 2zvv chain A to 2ZVV_A with 0 mismatches Associated 2zvv chain B to 2ZVV_A with 0 mismatches Associated 2zvv chain A to 2ZVV_A with 0 mismatches Associated 2zvv chain B to 2ZVV_A with 0 mismatches Associated 2zvv chain A to 2ZVV_A with 0 mismatches Associated 2zvv chain B to 2ZVV_A with 0 mismatches Associated 2zvv chain A to 2ZVV_A with 0 mismatches Associated 2zvv chain B to 2ZVV_A with 0 mismatches Associated 2zvv chain A to 2ZVV_A with 0 mismatches Associated 2zvv chain B to 2ZVV_A with 0 mismatches Showing conservation header (""seq_conservation"" residue attribute) for alignment bp3 [1] > sequence identity ""bp3 [1]:1"" ""bp3 [1]:2"" query vs. 2ZVV_A: 89.95% identity > ui tool show ""Modeller Comparative"" > modeller comparative ""bp3 [1]:1"" numModels 2 fast false multichain true > hetPreserve false hydrogens false waterPreserve false Traceback (most recent call last): File ""C:\Users\Sebastian\OneDrive\Studium\ChimeraX\bin\lib\site- packages\chimerax\modeller\tool.py"", line 302, in launch_modeller run( File ""C:\Users\Sebastian\OneDrive\Studium\ChimeraX\bin\lib\site- packages\chimerax\core\commands\run.py"", line 38, in run results = command.run(text, log=log, return_json=return_json) File ""C:\Users\Sebastian\OneDrive\Studium\ChimeraX\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2897, in run result = ci.function(session, **kw_args) File ""C:\Users\Sebastian\OneDrive\Studium\ChimeraX\bin\lib\site- packages\chimerax\modeller\cmd.py"", line 37, in sequence_model comparative.model(session, targets, block=block, multichain=multichain, File ""C:\Users\Sebastian\OneDrive\Studium\ChimeraX\bin\lib\site- packages\chimerax\modeller\comparative.py"", line 160, in model target_name = ""target"" if len(targets) > 1 else target.name AttributeError: 'NoneType' object has no attribute 'name' AttributeError: 'NoneType' object has no attribute 'name' File ""C:\Users\Sebastian\OneDrive\Studium\ChimeraX\bin\lib\site- packages\chimerax\modeller\comparative.py"", line 160, in model target_name = ""target"" if len(targets) > 1 else target.name See log for complete Python traceback. > modeller comparative ""bp3 [1]:1"" numModels 2 fast false multichain true > hetPreserve false hydrogens false waterPreserve false Traceback (most recent call last): File ""C:\Users\Sebastian\OneDrive\Studium\ChimeraX\bin\lib\site- packages\chimerax\modeller\tool.py"", line 302, in launch_modeller run( File ""C:\Users\Sebastian\OneDrive\Studium\ChimeraX\bin\lib\site- packages\chimerax\core\commands\run.py"", line 38, in run results = command.run(text, log=log, return_json=return_json) File ""C:\Users\Sebastian\OneDrive\Studium\ChimeraX\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2897, in run result = ci.function(session, **kw_args) File ""C:\Users\Sebastian\OneDrive\Studium\ChimeraX\bin\lib\site- packages\chimerax\modeller\cmd.py"", line 37, in sequence_model comparative.model(session, targets, block=block, multichain=multichain, File ""C:\Users\Sebastian\OneDrive\Studium\ChimeraX\bin\lib\site- packages\chimerax\modeller\comparative.py"", line 160, in model target_name = ""target"" if len(targets) > 1 else target.name AttributeError: 'NoneType' object has no attribute 'name' AttributeError: 'NoneType' object has no attribute 'name' File ""C:\Users\Sebastian\OneDrive\Studium\ChimeraX\bin\lib\site- packages\chimerax\modeller\comparative.py"", line 160, in model target_name = ""target"" if len(targets) > 1 else target.name See log for complete Python traceback. > modeller comparative LjPCNA1.fa:1 numModels 2 fast false multichain true > hetPreserve false hydrogens false waterPreserve false Alignment LjPCNA1.fa has no associated chains > modeller comparative ""bp3 [1]:1"" numModels 2 fast false multichain true > hetPreserve false hydrogens false waterPreserve false Traceback (most recent call last): File ""C:\Users\Sebastian\OneDrive\Studium\ChimeraX\bin\lib\site- packages\chimerax\modeller\tool.py"", line 302, in launch_modeller run( File ""C:\Users\Sebastian\OneDrive\Studium\ChimeraX\bin\lib\site- packages\chimerax\core\commands\run.py"", line 38, in run results = command.run(text, log=log, return_json=return_json) File ""C:\Users\Sebastian\OneDrive\Studium\ChimeraX\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2897, in run result = ci.function(session, **kw_args) File ""C:\Users\Sebastian\OneDrive\Studium\ChimeraX\bin\lib\site- packages\chimerax\modeller\cmd.py"", line 37, in sequence_model comparative.model(session, targets, block=block, multichain=multichain, File ""C:\Users\Sebastian\OneDrive\Studium\ChimeraX\bin\lib\site- packages\chimerax\modeller\comparative.py"", line 160, in model target_name = ""target"" if len(targets) > 1 else target.name AttributeError: 'NoneType' object has no attribute 'name' AttributeError: 'NoneType' object has no attribute 'name' File ""C:\Users\Sebastian\OneDrive\Studium\ChimeraX\bin\lib\site- packages\chimerax\modeller\comparative.py"", line 160, in model target_name = ""target"" if len(targets) > 1 else target.name See log for complete Python traceback. > modeller comparative ""bp3 [1]:2"" numModels 2 fast false multichain true > hetPreserve false hydrogens false waterPreserve false Traceback (most recent call last): File ""C:\Users\Sebastian\OneDrive\Studium\ChimeraX\bin\lib\site- packages\chimerax\modeller\tool.py"", line 302, in launch_modeller run( File ""C:\Users\Sebastian\OneDrive\Studium\ChimeraX\bin\lib\site- packages\chimerax\core\commands\run.py"", line 38, in run results = command.run(text, log=log, return_json=return_json) File ""C:\Users\Sebastian\OneDrive\Studium\ChimeraX\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2897, in run result = ci.function(session, **kw_args) File ""C:\Users\Sebastian\OneDrive\Studium\ChimeraX\bin\lib\site- packages\chimerax\modeller\cmd.py"", line 37, in sequence_model comparative.model(session, targets, block=block, multichain=multichain, File ""C:\Users\Sebastian\OneDrive\Studium\ChimeraX\bin\lib\site- packages\chimerax\modeller\comparative.py"", line 160, in model target_name = ""target"" if len(targets) > 1 else target.name AttributeError: 'NoneType' object has no attribute 'name' AttributeError: 'NoneType' object has no attribute 'name' File ""C:\Users\Sebastian\OneDrive\Studium\ChimeraX\bin\lib\site- packages\chimerax\modeller\comparative.py"", line 160, in model target_name = ""target"" if len(targets) > 1 else target.name See log for complete Python traceback. > modeller comparative ""bp3 [1]:1"" numModels 2 fast false multichain true > hetPreserve false hydrogens false waterPreserve false Traceback (most recent call last): File ""C:\Users\Sebastian\OneDrive\Studium\ChimeraX\bin\lib\site- packages\chimerax\modeller\tool.py"", line 302, in launch_modeller run( File ""C:\Users\Sebastian\OneDrive\Studium\ChimeraX\bin\lib\site- packages\chimerax\core\commands\run.py"", line 38, in run results = command.run(text, log=log, return_json=return_json) File ""C:\Users\Sebastian\OneDrive\Studium\ChimeraX\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2897, in run result = ci.function(session, **kw_args) File ""C:\Users\Sebastian\OneDrive\Studium\ChimeraX\bin\lib\site- packages\chimerax\modeller\cmd.py"", line 37, in sequence_model comparative.model(session, targets, block=block, multichain=multichain, File ""C:\Users\Sebastian\OneDrive\Studium\ChimeraX\bin\lib\site- packages\chimerax\modeller\comparative.py"", line 160, in model target_name = ""target"" if len(targets) > 1 else target.name AttributeError: 'NoneType' object has no attribute 'name' AttributeError: 'NoneType' object has no attribute 'name' File ""C:\Users\Sebastian\OneDrive\Studium\ChimeraX\bin\lib\site- packages\chimerax\modeller\comparative.py"", line 160, in model target_name = ""target"" if len(targets) > 1 else target.name See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 526.98 OpenGL renderer: NVIDIA GeForce GTX 960/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Python: 3.9.11 Locale: de_DE.cp1252 Qt version: PyQt6 6.3.1, Qt 6.3.1 Qt runtime version: 6.3.2 Qt platform: windows Manufacturer: To Be Filled By O.E.M. Model: To Be Filled By O.E.M. OS: Microsoft Windows 10 Pro (Build 19045) Memory: 17,095,184,384 MaxProcessMemory: 137,438,953,344 CPU: 4 Intel(R) Core(TM) i5-4460 CPU @ 3.20GHz OSLanguage: de-DE Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 asttokens: 2.1.0 Babel: 2.11.0 backcall: 0.2.0 blockdiag: 3.0.0 build: 0.8.0 certifi: 2022.9.24 cftime: 1.6.2 charset-normalizer: 2.1.1 ChimeraX-AddCharge: 1.4 ChimeraX-AddH: 2.2.1 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2.1 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.6 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.41.5 ChimeraX-AtomicLibrary: 8.0.3 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.7.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.1 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.2 ChimeraX-CommandLine: 1.2.4 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.5rc202211171732 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.1 ChimeraX-DistMonitor: 1.3 ChimeraX-DockPrep: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.2 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.2 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.1 ChimeraX-MatchMaker: 2.0.9 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.8 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.6 ChimeraX-ModelPanel: 1.3.6 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.1 ChimeraX-MouseModes: 1.1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.9.1 ChimeraX-PDB: 2.6.8 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.7.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.1.3 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.24.3 ChimeraX-uniprot: 2.2.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.1.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.1 ChimeraX-WebServices: 1.1.0 ChimeraX-Zone: 1.0.1 colorama: 0.4.5 comtypes: 1.1.10 cxservices: 1.2 cycler: 0.11.0 Cython: 0.29.32 debugpy: 1.6.3 decorator: 5.1.1 docutils: 0.19 entrypoints: 0.4 executing: 1.2.0 filelock: 3.7.1 fonttools: 4.38.0 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.7.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.33 imagecodecs: 2022.7.31 imagesize: 1.4.1 importlib-metadata: 5.0.0 ipykernel: 6.15.3 ipython: 8.4.0 ipython-genutils: 0.2.0 jedi: 0.18.1 Jinja2: 3.1.2 jupyter-client: 7.3.4 jupyter-core: 5.0.0 kiwisolver: 1.4.4 line-profiler: 3.5.1 lxml: 4.9.1 lz4: 4.0.2 MarkupSafe: 2.1.1 matplotlib: 3.5.2 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.0 networkx: 2.8.5 numexpr: 2.8.4 numpy: 1.23.1 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pickleshare: 0.7.5 Pillow: 9.2.0 pip: 22.2.2 pkginfo: 1.8.3 platformdirs: 2.5.4 prompt-toolkit: 3.0.32 psutil: 5.9.1 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.12.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 PyQt6-commercial: 6.3.1 PyQt6-Qt6: 6.3.2 PyQt6-sip: 13.4.0 PyQt6-WebEngine-commercial: 6.3.1 PyQt6-WebEngine-Qt6: 6.3.2 python-dateutil: 2.8.2 pytz: 2022.6 pywin32: 303 pyzmq: 24.0.1 qtconsole: 5.3.1 QtPy: 2.3.0 RandomWords: 0.4.0 requests: 2.28.1 scipy: 1.9.0 setuptools: 65.1.1 sfftk-rw: 0.7.2 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 5.1.1 sphinx-autodoc-typehints: 1.19.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.1 tables: 3.7.0 tifffile: 2022.7.31 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.2 traitlets: 5.3.0 urllib3: 1.26.12 wcwidth: 0.2.5 webcolors: 1.12 wheel: 0.37.1 wheel-filename: 1.4.1 WMI: 1.5.1 zipp: 3.10.0 }}} " defect closed normal Sequence duplicate Tom Goddard all ChimeraX