id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
7985	Graphics crash, macOS 13.0, Intel Iris Plus Graphics 645	chimerax-bug-report@…	Tom Goddard	"{{{
The following bug report has been submitted:
Platform:        macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.4 (2022-06-03 23:39:42 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Aborted

Current thread 0x00007ff8571f34c0 (most recent call first):
  File ""/private/var/folders/67/zbgfsr490n96n9kvfh5wdkt00000gn/T/AppTranslocation/9F668363-A205-4256-B90C-94BD79DD4330/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/OpenGL/GL/VERSION/GL_1_5.py"", line 125 in glBufferSubData
  File ""/private/var/folders/67/zbgfsr490n96n9kvfh5wdkt00000gn/T/AppTranslocation/9F668363-A205-4256-B90C-94BD79DD4330/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/opengl.py"", line 1637 in set_multishadow_view
  File ""/private/var/folders/67/zbgfsr490n96n9kvfh5wdkt00000gn/T/AppTranslocation/9F668363-A205-4256-B90C-94BD79DD4330/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py"", line 227 in _draw_scene
  File ""/private/var/folders/67/zbgfsr490n96n9kvfh5wdkt00000gn/T/AppTranslocation/9F668363-A205-4256-B90C-94BD79DD4330/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py"", line 165 in draw
  File ""/private/var/folders/67/zbgfsr490n96n9kvfh5wdkt00000gn/T/AppTranslocation/9F668363-A205-4256-B90C-94BD79DD4330/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py"", line 73 in draw_new_frame
  File ""/private/var/folders/67/zbgfsr490n96n9kvfh5wdkt00000gn/T/AppTranslocation/9F668363-A205-4256-B90C-94BD79DD4330/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py"", line 139 in _redraw_timer_callback
  File ""/private/var/folders/67/zbgfsr490n96n9kvfh5wdkt00000gn/T/AppTranslocation/9F668363-A205-4256-B90C-94BD79DD4330/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py"", line 318 in event_loop
  File ""/private/var/folders/67/zbgfsr490n96n9kvfh5wdkt00000gn/T/AppTranslocation/9F668363-A205-4256-B90C-94BD79DD4330/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py"", line 870 in init
  File ""/private/var/folders/67/zbgfsr490n96n9kvfh5wdkt00000gn/T/AppTranslocation/9F668363-A205-4256-B90C-94BD79DD4330/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py"", line 1021 in 
  File ""/private/var/folders/67/zbgfsr490n96n9kvfh5wdkt00000gn/T/AppTranslocation/9F668363-A205-4256-B90C-94BD79DD4330/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 87 in _run_code
  File ""/private/var/folders/67/zbgfsr490n96n9kvfh5wdkt00000gn/T/AppTranslocation/9F668363-A205-4256-B90C-94BD79DD4330/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 197 in _run_module_as_main


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===== Log before crash start =====
UCSF ChimeraX version: 1.4 (2022-06-03)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /Users/zhiwen/Downloads/suyuelyu_hexon/6cgv-assembly1.cif

6cgv-assembly1.cif title:  
Revised crystal structure of human adenovirus [more info...]  
  
Chain information for 6cgv-assembly1.cif #1  
---  
Chain | Description  
A A-10 A-11 A-12 A-13 A-14 A-15 A-16 A-17 A-18 A-19 A-2 A-20 A-21 A-22 A-23
A-24 A-25 A-26 A-27 A-28 A-29 A-3 A-30 A-31 A-32 A-33 A-34 A-35 A-36 A-37 A-38
A-39 A-4 A-40 A-41 A-42 A-43 A-44 A-45 A-46 A-47 A-48 A-49 A-5 A-50 A-51 A-52
A-53 A-54 A-55 A-56 A-57 A-58 A-59 A-6 A-60 A-7 A-8 A-9 B B-10 B-11 B-12 B-13
B-14 B-15 B-16 B-17 B-18 B-19 B-2 B-20 B-21 B-22 B-23 B-24 B-25 B-26 B-27 B-28
B-29 B-3 B-30 B-31 B-32 B-33 B-34 B-35 B-36 B-37 B-38 B-39 B-4 B-40 B-41 B-42
B-43 B-44 B-45 B-46 B-47 B-48 B-49 B-5 B-50 B-51 B-52 B-53 B-54 B-55 B-56 B-57
B-58 B-59 B-6 B-60 B-7 B-8 B-9 C C-10 C-11 C-12 C-13 C-14 C-15 C-16 C-17 C-18
C-19 C-2 C-20 C-21 C-22 C-23 C-24 C-25 C-26 C-27 C-28 C-29 C-3 C-30 C-31 C-32
C-33 C-34 C-35 C-36 C-37 C-38 C-39 C-4 C-40 C-41 C-42 C-43 C-44 C-45 C-46 C-47
C-48 C-49 C-5 C-50 C-51 C-52 C-53 C-54 C-55 C-56 C-57 C-58 C-59 C-6 C-60 C-7
C-8 C-9 D D-10 D-11 D-12 D-13 D-14 D-15 D-16 D-17 D-18 D-19 D-2 D-20 D-21 D-22
D-23 D-24 D-25 D-26 D-27 D-28 D-29 D-3 D-30 D-31 D-32 D-33 D-34 D-35 D-36 D-37
D-38 D-39 D-4 D-40 D-41 D-42 D-43 D-44 D-45 D-46 D-47 D-48 D-49 D-5 D-50 D-51
D-52 D-53 D-54 D-55 D-56 D-57 D-58 D-59 D-6 D-60 D-7 D-8 D-9 E E-10 E-11 E-12
E-13 E-14 E-15 E-16 E-17 E-18 E-19 E-2 E-20 E-21 E-22 E-23 E-24 E-25 E-26 E-27
E-28 E-29 E-3 E-30 E-31 E-32 E-33 E-34 E-35 E-36 E-37 E-38 E-39 E-4 E-40 E-41
E-42 E-43 E-44 E-45 E-46 E-47 E-48 E-49 E-5 E-50 E-51 E-52 E-53 E-54 E-55 E-56
E-57 E-58 E-59 E-6 E-60 E-7 E-8 E-9 F F-10 F-11 F-12 F-13 F-14 F-15 F-16 F-17
F-18 F-19 F-2 F-20 F-21 F-22 F-23 F-24 F-25 F-26 F-27 F-28 F-29 F-3 F-30 F-31
F-32 F-33 F-34 F-35 F-36 F-37 F-38 F-39 F-4 F-40 F-41 F-42 F-43 F-44 F-45 F-46
F-47 F-48 F-49 F-5 F-50 F-51 F-52 F-53 F-54 F-55 F-56 F-57 F-58 F-59 F-6 F-60
F-7 F-8 F-9 G G-10 G-11 G-12 G-13 G-14 G-15 G-16 G-17 G-18 G-19 G-2 G-20 G-21
G-22 G-23 G-24 G-25 G-26 G-27 G-28 G-29 G-3 G-30 G-31 G-32 G-33 G-34 G-35 G-36
G-37 G-38 G-39 G-4 G-40 G-41 G-42 G-43 G-44 G-45 G-46 G-47 G-48 G-49 G-5 G-50
G-51 G-52 G-53 G-54 G-55 G-56 G-57 G-58 G-59 G-6 G-60 G-7 G-8 G-9 H H-10 H-11
H-12 H-13 H-14 H-15 H-16 H-17 H-18 H-19 H-2 H-20 H-21 H-22 H-23 H-24 H-25 H-26
H-27 H-28 H-29 H-3 H-30 H-31 H-32 H-33 H-34 H-35 H-36 H-37 H-38 H-39 H-4 H-40
H-41 H-42 H-43 H-44 H-45 H-46 H-47 H-48 H-49 H-5 H-50 H-51 H-52 H-53 H-54 H-55
H-56 H-57 H-58 H-59 H-6 H-60 H-7 H-8 H-9 I I-10 I-11 I-12 I-13 I-14 I-15 I-16
I-17 I-18 I-19 I-2 I-20 I-21 I-22 I-23 I-24 I-25 I-26 I-27 I-28 I-29 I-3 I-30
I-31 I-32 I-33 I-34 I-35 I-36 I-37 I-38 I-39 I-4 I-40 I-41 I-42 I-43 I-44 I-45
I-46 I-47 I-48 I-49 I-5 I-50 I-51 I-52 I-53 I-54 I-55 I-56 I-57 I-58 I-59 I-6
I-60 I-7 I-8 I-9 J J-10 J-11 J-12 J-13 J-14 J-15 J-16 J-17 J-18 J-19 J-2 J-20
J-21 J-22 J-23 J-24 J-25 J-26 J-27 J-28 J-29 J-3 J-30 J-31 J-32 J-33 J-34 J-35
J-36 J-37 J-38 J-39 J-4 J-40 J-41 J-42 J-43 J-44 J-45 J-46 J-47 J-48 J-49 J-5
J-50 J-51 J-52 J-53 J-54 J-55 J-56 J-57 J-58 J-59 J-6 J-60 J-7 J-8 J-9 K K-10
K-11 K-12 K-13 K-14 K-15 K-16 K-17 K-18 K-19 K-2 K-20 K-21 K-22 K-23 K-24 K-25
K-26 K-27 K-28 K-29 K-3 K-30 K-31 K-32 K-33 K-34 K-35 K-36 K-37 K-38 K-39 K-4
K-40 K-41 K-42 K-43 K-44 K-45 K-46 K-47 K-48 K-49 K-5 K-50 K-51 K-52 K-53 K-54
K-55 K-56 K-57 K-58 K-59 K-6 K-60 K-7 K-8 K-9 L L-10 L-11 L-12 L-13 L-14 L-15
L-16 L-17 L-18 L-19 L-2 L-20 L-21 L-22 L-23 L-24 L-25 L-26 L-27 L-28 L-29 L-3
L-30 L-31 L-32 L-33 L-34 L-35 L-36 L-37 L-38 L-39 L-4 L-40 L-41 L-42 L-43 L-44
L-45 L-46 L-47 L-48 L-49 L-5 L-50 L-51 L-52 L-53 L-54 L-55 L-56 L-57 L-58 L-59
L-6 L-60 L-7 L-8 L-9 | Hexon protein  
M M-10 M-11 M-12 M-13 M-14 M-15 M-16 M-17 M-18 M-19 M-2 M-20 M-21 M-22 M-23
M-24 M-25 M-26 M-27 M-28 M-29 M-3 M-30 M-31 M-32 M-33 M-34 M-35 M-36 M-37 M-38
M-39 M-4 M-40 M-41 M-42 M-43 M-44 M-45 M-46 M-47 M-48 M-49 M-5 M-50 M-51 M-52
M-53 M-54 M-55 M-56 M-57 M-58 M-59 M-6 M-60 M-7 M-8 M-9 | Pre-hexon-linking
protein IIIa  
N N-10 N-11 N-12 N-13 N-14 N-15 N-16 N-17 N-18 N-19 N-2 N-20 N-21 N-22 N-23
N-24 N-25 N-26 N-27 N-28 N-29 N-3 N-30 N-31 N-32 N-33 N-34 N-35 N-36 N-37 N-38
N-39 N-4 N-40 N-41 N-42 N-43 N-44 N-45 N-46 N-47 N-48 N-49 N-5 N-50 N-51 N-52
N-53 N-54 N-55 N-56 N-57 N-58 N-59 N-6 N-60 N-7 N-8 N-9 | Penton protein  
P P-10 P-11 P-12 P-13 P-14 P-15 P-16 P-17 P-18 P-19 P-2 P-20 P-21 P-22 P-23
P-24 P-25 P-26 P-27 P-28 P-29 P-3 P-30 P-31 P-32 P-33 P-34 P-35 P-36 P-37 P-38
P-39 P-4 P-40 P-41 P-42 P-43 P-44 P-45 P-46 P-47 P-48 P-49 P-5 P-50 P-51 P-52
P-53 P-54 P-55 P-56 P-57 P-58 P-59 P-6 P-60 P-7 P-8 P-9 Q Q-10 Q-11 Q-12 Q-13
Q-14 Q-15 Q-16 Q-17 Q-18 Q-19 Q-2 Q-20 Q-21 Q-22 Q-23 Q-24 Q-25 Q-26 Q-27 Q-28
Q-29 Q-3 Q-30 Q-31 Q-32 Q-33 Q-34 Q-35 Q-36 Q-37 Q-38 Q-39 Q-4 Q-40 Q-41 Q-42
Q-43 Q-44 Q-45 Q-46 Q-47 Q-48 Q-49 Q-5 Q-50 Q-51 Q-52 Q-53 Q-54 Q-55 Q-56 Q-57
Q-58 Q-59 Q-6 Q-60 Q-7 Q-8 Q-9 R R-10 R-11 R-12 R-13 R-14 R-15 R-16 R-17 R-18
R-19 R-2 R-20 R-21 R-22 R-23 R-24 R-25 R-26 R-27 R-28 R-29 R-3 R-30 R-31 R-32
R-33 R-34 R-35 R-36 R-37 R-38 R-39 R-4 R-40 R-41 R-42 R-43 R-44 R-45 R-46 R-47
R-48 R-49 R-5 R-50 R-51 R-52 R-53 R-54 R-55 R-56 R-57 R-58 R-59 R-6 R-60 R-7
R-8 R-9 S S-10 S-11 S-12 S-13 S-14 S-15 S-16 S-17 S-18 S-19 S-2 S-20 S-21 S-22
S-23 S-24 S-25 S-26 S-27 S-28 S-29 S-3 S-30 S-31 S-32 S-33 S-34 S-35 S-36 S-37
S-38 S-39 S-4 S-40 S-41 S-42 S-43 S-44 S-45 S-46 S-47 S-48 S-49 S-5 S-50 S-51
S-52 S-53 S-54 S-55 S-56 S-57 S-58 S-59 S-6 S-60 S-7 S-8 S-9 | Hexon-
interlacing protein  
U U-10 U-11 U-12 U-13 U-14 U-15 U-16 U-17 U-18 U-19 U-2 U-20 U-21 U-22 U-23
U-24 U-25 U-26 U-27 U-28 U-29 U-3 U-30 U-31 U-32 U-33 U-34 U-35 U-36 U-37 U-38
U-39 U-4 U-40 U-41 U-42 U-43 U-44 U-45 U-46 U-47 U-48 U-49 U-5 U-50 U-51 U-52
U-53 U-54 U-55 U-56 U-57 U-58 U-59 U-6 U-60 U-7 U-8 U-9 V V-10 V-11 V-12 V-13
V-14 V-15 V-16 V-17 V-18 V-19 V-2 V-20 V-21 V-22 V-23 V-24 V-25 V-26 V-27 V-28
V-29 V-3 V-30 V-31 V-32 V-33 V-34 V-35 V-36 V-37 V-38 V-39 V-4 V-40 V-41 V-42
V-43 V-44 V-45 V-46 V-47 V-48 V-49 V-5 V-50 V-51 V-52 V-53 V-54 V-55 V-56 V-57
V-58 V-59 V-6 V-60 V-7 V-8 V-9 | Pre-hexon-linking protein VIII  
W W-10 W-11 W-12 W-13 W-14 W-15 W-16 W-17 W-18 W-19 W-2 W-20 W-21 W-22 W-23
W-24 W-25 W-26 W-27 W-28 W-29 W-3 W-30 W-31 W-32 W-33 W-34 W-35 W-36 W-37 W-38
W-39 W-4 W-40 W-41 W-42 W-43 W-44 W-45 W-46 W-47 W-48 W-49 W-5 W-50 W-51 W-52
W-53 W-54 W-55 W-56 W-57 W-58 W-59 W-6 W-60 W-7 W-8 W-9 | Pre-protein VI  
  

> select //chain_id='A-10':8-952

7345 atoms, 7543 bonds, 1 pseudobond, 917 residues, 2 models selected  

> ui tool show Contacts

> contacts ignoreHiddenModels true

4052780 contacts  


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.4 (2022-06-03)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 INTEL-20.2.44
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 645
OpenGL vendor: Intel Inc.

Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.0, Qt 6.3.0
Qt runtime version: 6.3.0
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro15,4
      Processor Name: Quad-Core Intel Core i5
      Processor Speed: 1.4 GHz
      Number of Processors: 1
      Total Number of Cores: 4
      L2 Cache (per Core): 256 KB
      L3 Cache: 6 MB
      Hyper-Threading Technology: Enabled
      Memory: 8 GB
      System Firmware Version: 1916.40.8.0.0 (iBridge: 20.16.411.0.0,0)
      OS Loader Version: 564.40.4~27

Software:

    System Software Overview:

      System Version: macOS 13.0 (22A380)
      Kernel Version: Darwin 22.1.0
      Time since boot: 3 days, 1 hour, 32 minutes

Graphics/Displays:

    Intel Iris Plus Graphics 645:

      Chipset Model: Intel Iris Plus Graphics 645
      Type: GPU
      Bus: Built-In
      VRAM (Dynamic, Max): 1536 MB
      Vendor: Intel
      Device ID: 0x3ea6
      Revision ID: 0x0001
      Metal Support: Metal 3
      Displays:
        LF24T35:
          Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
          UI Looks like: 1920 x 1080 @ 60.00Hz
          Framebuffer Depth: 30-Bit Color (ARGB2101010)
          Display Serial Number: HCNRB06626  
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Rotation: Supported
          Connection Type: DVI or HDMI
          Adapter Firmware Version: 7.55


Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    appnope: 0.1.3
    Babel: 2.10.1
    backcall: 0.2.0
    blockdiag: 3.0.0
    certifi: 2021.10.8
    cftime: 1.6.0
    charset-normalizer: 2.0.12
    ChimeraX-AddCharge: 1.2.3
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.4.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.39.1
    ChimeraX-AtomicLibrary: 7.0
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.1
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.7
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.1
    ChimeraX-CommandLine: 1.2.3
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.4
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.6
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.7
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.5.5
    ChimeraX-ModelPanel: 1.3.2
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.9
    ChimeraX-PDB: 2.6.6
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.8
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.0.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.1
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.18.3
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.26
    debugpy: 1.6.0
    decorator: 5.1.1
    docutils: 0.17.1
    entrypoints: 0.4
    filelock: 3.4.2
    fonttools: 4.33.3
    funcparserlib: 1.0.0
    grako: 3.16.5
    h5py: 3.7.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.27
    imagecodecs: 2021.11.20
    imagesize: 1.3.0
    ipykernel: 6.6.1
    ipython: 7.31.1
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.0.3
    jupyter-client: 7.1.0
    jupyter-core: 4.10.0
    kiwisolver: 1.4.2
    line-profiler: 3.4.0
    lxml: 4.7.1
    lz4: 3.1.10
    MarkupSafe: 2.1.1
    matplotlib: 3.5.1
    matplotlib-inline: 0.1.3
    msgpack: 1.0.3
    nest-asyncio: 1.5.5
    netCDF4: 1.5.8
    networkx: 2.6.3
    numexpr: 2.8.1
    numpy: 1.22.1
    openvr: 1.16.802
    packaging: 21.0
    ParmEd: 3.4.3
    parso: 0.8.3
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.0.1
    pip: 21.3.1
    pkginfo: 1.8.2
    prompt-toolkit: 3.0.29
    psutil: 5.9.0
    ptyprocess: 0.7.0
    pycollada: 0.7.2
    pydicom: 2.2.2
    Pygments: 2.11.2
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    PyQt6-commercial: 6.3.0
    PyQt6-Qt6: 6.3.0
    PyQt6-sip: 13.3.1
    PyQt6-WebEngine-commercial: 6.3.0
    PyQt6-WebEngine-Qt6: 6.3.0
    python-dateutil: 2.8.2
    pytz: 2022.1
    pyzmq: 23.1.0
    qtconsole: 5.3.0
    QtPy: 2.1.0
    RandomWords: 0.3.0
    requests: 2.27.1
    scipy: 1.7.3
    setuptools: 59.8.0
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.3.2
    sphinx-autodoc-typehints: 1.15.2
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-community: 1.0.0
    tables: 3.7.0
    tifffile: 2021.11.2
    tinyarray: 1.2.4
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.9
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.1
    wheel-filename: 1.3.0

}}}
"	defect	closed	normal		Graphics		nonchimerax						all	ChimeraX