id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 794 "wrong pseudobonds labeled, and ""close"" causes seg fault" Elaine Meng Eric Pettersen "If I run the following setup (also attached as cxc) open 4gbc sym #1 ass 1 copies t hide; hide ribbons show Zn sel zone Zn 4 res t show sel; sel clear style #2.3 ball It shows an assembly trimer #2.1-3 with some zinc ions each coordinated by 3 histidines, one from each trimer. If I select one of the pseudobonds from #2.3 (shown in ball-and-stick since the residue labels don't help distinguish the copies) and use label sel pseudobond it labels two pseudobonds, and neither of them are the one I selected. See attached image. Yet another issue is *usually* entering ""close"" then nuked ChimeraX. Twice I got a seg fault, once I got nothing in the Terminal upon nukage. Once it did not nuke ChimeraX. Sometimes I did only the above, sometimes I did the above and then ""label del"" and then selected a different pseudobonds and then tried ""label sel p"" again. The seg fault put the following in the Terminal: Fatal Python error: Segmentation fault Current thread 0x00007fffa91473c0 (most recent call first): File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/atomic/molobject.py"", line 1463 in delete File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/atomic/structure.py"", line 87 in delete File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/models.py"", line 400 in close File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/commands/close.py"", line 32 in close File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/commands/cli.py"", line 2395 in run File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/cmd_line/tool.py"", line 177 in execute File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/cmd_line/tool.py"", line 71 in keyPressEvent File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/ui/gui.py"", line 200 in event_loop File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/ChimeraX_main.py"", line 615 in init File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/ChimeraX_main.py"", line 706 in File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/runpy.py"", line 85 in _run_code File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/runpy.py"", line 193 in _run_module_as_main Segmentation fault " defect closed major Depiction fixed Eric Pettersen all ChimeraX