id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 7877 Graphics crash, macOS 12.4, Intel Iris Plus Graphics 645 chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-10.16-x86_64-i386-64bit ChimeraX Version: 1.4 (2022-06-03 23:39:42 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Aborted Thread 0x000070000449c000 (most recent call first): File ""/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/945AAEF9-9590-4676-83C7-9F3B32B4A7D1/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 316 in wait File ""/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/945AAEF9-9590-4676-83C7-9F3B32B4A7D1/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 574 in wait File ""/private/var/folders/xh/mgmqjzc13xg2rqp8t8dvfyhr0000gn/T/AppTranslocation/945AAEF9-9590-4676-83C7-9F3B32B4A7D1/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 1297 in run File 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All rights reserved. How to cite UCSF ChimeraX > open > /Users/julianaabramovich/Desktop/20200602_VLP_old_3_square_04_stack_full_rec_sirtl16_zshort16_bin4__Membrane_good_seg.hdf > format emanhdf No such file/path: /Users/julianaabramovich/Desktop/20200602_VLP_old_3_square_04_stack_full_rec_sirtl16_zshort16_bin4__Membrane_good_seg.hdf > open /Users/julianaabramovich/Downloads/output_volume(7).mrc format mrc No such file/path: /Users/julianaabramovich/Downloads/output_volume(7).mrc > open /Users/julianaabramovich/Downloads/cryosparc_P3_J272_004_volume_map.mrc > format mrc Opened cryosparc_P3_J272_004_volume_map.mrc as #1, grid size 320,320,320, pixel 1.66, shown at level 0.427, step 2, values float32 > open /Users/julianaabramovich/Downloads/cryosparc_P3_J373_002_volume_map.mrc Opened cryosparc_P3_J373_002_volume_map.mrc as #2, grid size 320,320,320, pixel 1.66, shown at level 0.196, step 2, values float32 > hide #!1 models > volume #2 level 0.204 > open /Users/julianaabramovich/Downloads/J201_bigSU_vol.mrc format mrc Opened J201_bigSU_vol.mrc as #3, grid size 205,196,215, pixel 1.33,1.33,1.33, shown at level 0.643, step 1, values float32 > volume #3 level 0.5575 > hide #!2 models > open /Users/julianaabramovich/Downloads/J272_largeSU_onGrid.mrc format mrc Opened J272_largeSU_onGrid.mrc as #4, grid size 320,320,320, pixel 1.66, shown at level 0.358, step 2, values float32 > hide #!3 models > surface dust #4 size 16.6 > open /Users/julianaabramovich/Downloads/cryosparc_P3_J386_007_volume_map.mrc > /Users/julianaabramovich/Downloads/output_volume(9).mrc Opened cryosparc_P3_J386_007_volume_map.mrc as #5.1, grid size 320,320,320, pixel 1.66, shown at level 0.401, step 2, values float32 Opened output_volume(9).mrc as #5.2, grid size 320,320,320, pixel 0.83, shown at level 1, step 2, values float32 > hide #!5 models > hide #!4 models > show #!5 models > hide #!5.2 models > volume #5.2 level 0.9908 > surface dust #5.1 size 16.6 > surface dust #5.2 size 8.3 > volume #5.2 level 1 > volume #5.1 level 0.3638 > open /Users/julianaabramovich/Downloads/J274_largeSU_onGrid.mrc format mrc Opened J274_largeSU_onGrid.mrc as #6, grid size 160,160,160, pixel 3.32, shown at level 0.15, step 1, values float32 > hide #!6 models > open /Users/julianaabramovich/Downloads/cryosparc_P3_J274_002_volume_map.mrc > format mrc Opened cryosparc_P3_J274_002_volume_map.mrc as #7, grid size 320,320,320, pixel 1.66, shown at level 0.612, step 2, values float32 > hide #!7 models > hide #!5.1 models > surface dust #5.1 size 16.6 > surface dust #7 size 16.6 > volume #7 level 0.5734 > volume #5.1 level 0.3301 > hide #!5 models > hide #!5.1 models > hide #!7 models > hide #!2 models > show #!5.1 models > close #7 > close #5.1 > open > /Users/julianaabramovich/Downloads/cryosparc_P3_J338_class_00_01700_volume.mrc > format mrc No such file/path: /Users/julianaabramovich/Downloads/cryosparc_P3_J338_class_00_01700_volume.mrc > open > /Users/julianaabramovich/Downloads/cryosparc_P3_J338_class_00_01700_volume.mrc Opened cryosparc_P3_J338_class_00_01700_volume.mrc as #7, grid size 256,256,256, pixel 3.89, shown at level 0.835, step 1, values float32 > surface dust #7 size 38.9 > ui tool show ""Map Eraser"" > volume erase #7 center 591.31,392.54,556.74 radius 127.52 Opened cryosparc_P3_J338_class_00_01700_volume.mrc copy as #9, grid size 256,256,256, pixel 3.89, shown at step 1, values float32 > surface dust #9 size 38.9 > volume erase #9 center 632.15,460.18,596.47 radius 127.49 > molmap #9 5 No atoms specified > molmap #1 15 No atoms specified > molmap #9 15 No atoms specified > volume #9 step 2 > volume #9 level 0.7664 > volume #9 color #d7ea84 > volume #9 level 0.4429 > surface dust #7 size 38.9 > surface dust #9 size 38.9 > surface dust #7 size 38.9 > surface dust #9 size 38.9 > volume #9 step 1 > volume #9 level 0.584 > volume #9 level 0.6849 > volume #9 level 0.7151 > volume erase #7 center 466.21,520.16,377.56 radius 127.49 Opened cryosparc_P3_J338_class_00_01700_volume.mrc copy as #10, grid size 256,256,256, pixel 3.89, shown at step 1, values float32 > surface dust #10 size 38.9 > volume erase #10 center 414.51,604.53,485.81 radius 159.36 > volume erase #10 center 368.03,542.23,471.89 radius 159.36 > volume #10 color #bbea81 > volume #10 color #e3eadf > volume #10 color #eae7c7 > volume #9 color #d3ecce > volume #9 color #bcecb7 > volume #10 level 0.733 > volume #10 level 0.682 > volume #10 level 0.6757 > save /Users/julianaabramovich/Downloads/Ribo1_J338_vol.mrc models #9 > save /Users/julianaabramovich/Downloads/Ribo2_J338_vol.mrc models #10 > open /Users/julianaabramovich/Downloads/Ribo2_J338_vol.mrc format mrc Opened Ribo2_J338_vol.mrc as #11, grid size 256,256,256, pixel 3.89, shown at level 0.604, step 1, values float32 > volume #11 level 0.802 > surface dust #7 size 38.9 > surface dust #9 size 38.9 > surface dust #11 size 38.9 > volume #11 level 0.6554 > volume #11 level 0.6809 > volume #11 level 0.7638 > open /Users/julianaabramovich/Downloads/output_volume(10).mrc > /Users/julianaabramovich/Downloads/output_volume(11).mrc Opened output_volume(10).mrc as #12.1, grid size 256,256,256, pixel 0.83, shown at level 1, step 1, values float32 Opened output_volume(11).mrc as #12.2, grid size 256,256,256, pixel 0.83, shown at level 1, step 1, values float32 > volume #12.1 level 0.9982 > volume #12.1 level 0.9963 > volume #12.2 level 0.9834 > volume #11 step 2 > volume #11 level 0.585 > volume #9 level 0.8059 > volume #9 level 0.7857 > volume #7 step 2 > volume #7 level 0.7566 > volume #7 level 0.7664 > save /Users/julianaabramovich/Downloads/J338_it1700_poly.mrc models #7 > volume #7 level 0.7174 > volume #7 level 0.8057 > volume #12.1 level 0.9649 > volume #12.1 level 0.9834 > volume #12.1 level 0 > volume #12.2 level 0.9612 > volume #12.2 level 0.9649 > close #12.2 > close #12.1 > volume #11 level 0.6684 > open /Users/julianaabramovich/Downloads/Ribo2_J338_vol.mrc format mrc Opened Ribo2_J338_vol.mrc as #13, grid size 256,256,256, pixel 3.89, shown at level 0.604, step 1, values float32 > volume #13 level 0.6363 > surface dust #13 size 38.9 > volume #13 level 0.6681 > volume #13 level 0.7319 > open /Users/julianaabramovich/Downloads/output_volume(9).mrc > /Users/julianaabramovich/Downloads/output_volume(10).mrc Opened output_volume(9).mrc as #14.1, grid size 320,320,320, pixel 0.83, shown at level 1, step 2, values float32 Opened output_volume(10).mrc as #14.2, grid size 256,256,256, pixel 0.83, shown at level 1, step 1, values float32 > volume #14.1 level 0.9908 > volume #14.1 level 0.009242 > volume #14.2 level 0.8854 > volume #14.2 level 0.1312 > volume #14.2 level 0.01109 > volume #5.2 level 0 > volume #5.2 level 0.01664 > surface dust #5.2 size 8.3 > surface dust #14.1 size 8.3 > surface dust #14.2 size 8.3 > surface dust #5.2 size 8.3 > surface dust #14.1 size 8.3 > surface dust #14.2 size 8.3 > volume #5.2 level 0.03327 > volume #14.1 level 0.007394 > volume #14.2 level 0.02773 > volume #14.2 level 0 > volume #14.2 level 0.0573 > open > ""/Users/julianaabramovich/Library/Containers/com.apple.mail/Data/Library/Mail > Downloads/C1617ACE-9D2F-4894-B4BA-AE79A3E5760C/6olg_noMVM.cif"" format mmcif 6olg_noMVM.cif title: Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA) [more info...] Chain information for 6olg_noMVM.cif #15 --- Chain | Description | UniProt A | Cadherin-1 | CADH1_HUMAN A2 | 28S ribosomal RNA | A3 | 5.8S ribosomal RNA | A4 | 5S ribosomal RNA | AA | 60S ribosomal protein L8 | RL8_HUMAN AB | 60S ribosomal protein L3 | RL3_HUMAN AC | 60S ribosomal protein L4 | RL4_HUMAN AD | 60S ribosomal protein L5 | RL5_HUMAN AE | 60S ribosomal protein L6 | RL6_HUMAN AF | 60S ribosomal protein L7 | RL7_HUMAN AG | 60S ribosomal protein L7a | RL7A_HUMAN AH | 60S ribosomal protein L9 | RL9_HUMAN AI | 60S ribosomal protein L10 | RL10_HUMAN AJ | 60S ribosomal protein L11 | RL11_HUMAN AK | 60S acidic ribosomal protein P0 | RLA0_HUMAN AL | 60S ribosomal protein L13 | RL13_HUMAN AM | 60S ribosomal protein L14 | RL14_HUMAN AN | 60S ribosomal protein L15 | RL15_HUMAN AO | 60S ribosomal protein L13a | RL13A_HUMAN AP | 60S ribosomal protein L17 | RL17_HUMAN AQ | 60S ribosomal protein L18 | RL18_HUMAN AR | 60S ribosomal protein L19 | RL19_HUMAN AS | 60S ribosomal protein L18a | RL18A_HUMAN AT | 60S ribosomal protein L21 | RL21_HUMAN AU | 60S ribosomal protein L22 | RL22_HUMAN AV | 60S ribosomal protein L23 | Q9BTQ7_HUMAN AW | 60S ribosomal protein L24 | RL24_HUMAN AX | 60S ribosomal protein L23a | RL23A_HUMAN AY | 60S ribosomal protein L26 | RL26_HUMAN AZ | 60S ribosomal protein L27 | RL27_HUMAN Aa | 60S ribosomal protein L27a | RL27A_HUMAN Ab | 60S ribosomal protein L29 | RL29_HUMAN Ac | 60S ribosomal protein L30 | RL30_HUMAN Ad | 60S ribosomal protein L31 | RL31_HUMAN Ae | 60S ribosomal protein L32 | RL32_HUMAN Af | 60S ribosomal protein L35a | RL35A_HUMAN Ag | 60S ribosomal protein L34 | RL34_HUMAN Ah | 60S ribosomal protein L35 | RL35_HUMAN Ai | 60S ribosomal protein L36 | RL36_HUMAN Aj | 60S ribosomal protein L37 | RL37_HUMAN Ak | 60S ribosomal protein L38 | RL38_HUMAN Al | 60S ribosomal protein L39 | RL39_HUMAN Am | 60S ribosomal protein L40 | RL40_HUMAN An | 60S ribosomal protein L41 | RL41_HUMAN Ao | 60S ribosomal protein L36a | RL36A_HUMAN Ap | 60S ribosomal protein L37a | RL37A_HUMAN Aq | 60S ribosomal protein L12 | RL12_HUMAN At | 60S ribosomal protein L28 | RL28_HUMAN Au | 60S ribosomal protein L10a | RL10A_HUMAN B1 | 18S ribosomal RNA | BA | 40S ribosomal protein SA | RSSA_HUMAN BB | 40S ribosomal protein S3a | RS3A_HUMAN BC | 40S ribosomal protein S2 | RS2_HUMAN BD | 40S ribosomal protein S3 | RS3_HUMAN BE | 40S ribosomal protein S4, Y isoform 1 | RS4Y1_HUMAN BF | 40S ribosomal protein S5 | RS5_HUMAN BG | 40S ribosomal protein S6 | RS6_HUMAN BH | 40S ribosomal protein S7 | RS7_HUMAN BI | 40S ribosomal protein S8 | RS8_HUMAN BJ | 40S ribosomal protein S9 | RS9_HUMAN BK | 40S ribosomal protein S10 | RS10_HUMAN BL | 40S ribosomal protein S11 | RS11_HUMAN BM | 40S ribosomal protein S12 | RS12_HUMAN BN | 40S ribosomal protein S13 | RS13_HUMAN BO | 40S ribosomal protein S14 | RS14_HUMAN BP | 40S ribosomal protein S15 | RS15_HUMAN BQ | 40S ribosomal protein S16 | RS16_HUMAN BR | 40S ribosomal protein S17 | RS17_HUMAN BS | 40S ribosomal protein S18 | RS18_HUMAN BT | 40S ribosomal protein S19 | RS19_HUMAN BU | 40S ribosomal protein S20 | RS20_HUMAN BV | 40S ribosomal protein S21 | RS21_HUMAN BW | 40S ribosomal protein S15a | RS15A_HUMAN BX | 40S ribosomal protein S23 | RS23_HUMAN BY | 40S ribosomal protein S24 | RS24_HUMAN BZ | 40S ribosomal protein S25 | RS25_HUMAN Ba | 40S ribosomal protein S26 | RS26_HUMAN Bb | 40S ribosomal protein S27 | RS27_HUMAN Bc | 40S ribosomal protein S28 | RS28_HUMAN Bd | 40S ribosomal protein S29 | RS29_HUMAN Be | 40S ribosomal protein S30 | E9PR30_HUMAN Bf | 40S ribosomal protein S27a | RS27A_HUMAN Bg | Receptor of activated protein C kinase 1 | RACK1_HUMAN Bv | tRNA | Bx | mRNA | Non-standard residues in 6olg_noMVM.cif #15 --- MG — magnesium ion ZN — zinc ion > hide atoms > show cartoons > select /Bv 1625 atoms, 1813 bonds, 80 pseudobonds, 78 residues, 3 models selected > select /Bv 1625 atoms, 1813 bonds, 80 pseudobonds, 78 residues, 3 models selected > delete atoms (#!15 & sel) > delete bonds (#!15 & sel) > select /Bx 320 atoms, 351 bonds, 16 residues, 1 model selected ===== Log before crash end ===== Log: You can double click a model's Name or ID in the model panel to edit those fields UCSF ChimeraX version: 1.4 (2022-06-03) © 2016-2022 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 INTEL-18.7.4 OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 645 OpenGL vendor: Intel Inc. Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.3.0, Qt 6.3.0 Qt runtime version: 6.3.0 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro15,4 Processor Name: Quad-Core Intel Core i5 Processor Speed: 1.4 GHz Number of Processors: 1 Total Number of Cores: 4 L2 Cache (per Core): 256 KB L3 Cache: 6 MB Hyper-Threading Technology: Enabled Memory: 8 GB System Firmware Version: 1731.120.10.0.0 (iBridge: 19.16.15071.0.0,0) OS Loader Version: 540.120.3~6 Software: System Software Overview: System Version: macOS 12.4 (21F79) Kernel Version: Darwin 21.5.0 Time since boot: 11 days 4:12 Graphics/Displays: Intel Iris Plus Graphics 645: Chipset Model: Intel Iris Plus Graphics 645 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x3ea6 Revision ID: 0x0001 Metal Family: Supported, Metal GPUFamily macOS 2 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Framebuffer Depth: 30-Bit Color (ARGB2101010) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal MX279: Resolution: 1920 x 1080 (1080p FHD - Full High Definition) UI Looks like: 1920 x 1080 @ 60.00Hz Framebuffer Depth: 30-Bit Color (ARGB2101010) Display Serial Number: G6LMRS046299 Mirror: Off Online: Yes Rotation: Supported Connection Type: DVI or HDMI Adapter Firmware Version: 7.55 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.3 Babel: 2.10.1 backcall: 0.2.0 blockdiag: 3.0.0 certifi: 2021.10.8 cftime: 1.6.0 charset-normalizer: 2.0.12 ChimeraX-AddCharge: 1.2.3 ChimeraX-AddH: 2.1.11 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2.1 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.4.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.39.1 ChimeraX-AtomicLibrary: 7.0 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.1 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.1 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.7 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.2 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.1 ChimeraX-CommandLine: 1.2.3 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.4 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.1 ChimeraX-DistMonitor: 1.1.5 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.2 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.1.2 ChimeraX-Help: 1.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0 ChimeraX-Label: 1.1.1 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 2.0.6 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.7 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.5.5 ChimeraX-ModelPanel: 1.3.2 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.2 ChimeraX-OpenCommand: 1.9 ChimeraX-PDB: 2.6.6 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.6 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.1 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.8 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.0.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.1 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.18.3 ChimeraX-uniprot: 2.2 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.1.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.1.0 ChimeraX-Zone: 1.0 colorama: 0.4.4 cxservices: 1.2 cycler: 0.11.0 Cython: 0.29.26 debugpy: 1.6.0 decorator: 5.1.1 docutils: 0.17.1 entrypoints: 0.4 filelock: 3.4.2 fonttools: 4.33.3 funcparserlib: 1.0.0 grako: 3.16.5 h5py: 3.7.0 html2text: 2020.1.16 idna: 3.3 ihm: 0.27 imagecodecs: 2021.11.20 imagesize: 1.3.0 ipykernel: 6.6.1 ipython: 7.31.1 ipython-genutils: 0.2.0 jedi: 0.18.1 Jinja2: 3.0.3 jupyter-client: 7.1.0 jupyter-core: 4.10.0 kiwisolver: 1.4.2 line-profiler: 3.4.0 lxml: 4.7.1 lz4: 3.1.10 MarkupSafe: 2.1.1 matplotlib: 3.5.1 matplotlib-inline: 0.1.3 msgpack: 1.0.3 nest-asyncio: 1.5.5 netCDF4: 1.5.8 networkx: 2.6.3 numexpr: 2.8.1 numpy: 1.22.1 openvr: 1.16.802 packaging: 21.0 ParmEd: 3.4.3 parso: 0.8.3 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.0.1 pip: 21.3.1 pkginfo: 1.8.2 prompt-toolkit: 3.0.29 psutil: 5.9.0 ptyprocess: 0.7.0 pycollada: 0.7.2 pydicom: 2.2.2 Pygments: 2.11.2 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 PyQt6-commercial: 6.3.0 PyQt6-Qt6: 6.3.0 PyQt6-sip: 13.3.1 PyQt6-WebEngine-commercial: 6.3.0 PyQt6-WebEngine-Qt6: 6.3.0 python-dateutil: 2.8.2 pytz: 2022.1 pyzmq: 23.1.0 qtconsole: 5.3.0 QtPy: 2.1.0 RandomWords: 0.3.0 requests: 2.27.1 scipy: 1.7.3 setuptools: 59.8.0 sfftk-rw: 0.7.2 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 4.3.2 sphinx-autodoc-typehints: 1.15.2 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-community: 1.0.0 tables: 3.7.0 tifffile: 2021.11.2 tinyarray: 1.2.4 tornado: 6.1 traitlets: 5.1.1 urllib3: 1.26.9 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.37.1 wheel-filename: 1.3.0 }}} " defect closed normal Graphics nonchimerax all ChimeraX