id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
7823	Crossfade: images do not match	zhf4001@…	Tom Goddard	"{{{
The following bug report has been submitted:
Platform:        Windows-10-10.0.22000
ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  

> open
> D:\\\TMEM16\\\nhTMEM16\\\WT\\\DOPCDOPG_Ca\\\segmentation\\\segmentation_all_lipids_100422-v6.cxs

Opened nhWT_Closed_combined map-071222_lipids_all_v2.mrc as #3, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.0556, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v3.mrc as #4, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.0702, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v4.mrc as #5, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.08, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v5.mrc as #6, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.0158, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipid918.mrc as #7, grid size 36,98,36,
pixel 0.825,0.825,0.825, shown at level 0.0157, step 1, values float32  
Opened nhWT_Closed_combined map-071222_lipid918_partial.mrc as #8, grid size
24,82,24, pixel 0.825,0.825,0.825, shown at level 0.000318, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_protein.mrc as #2, grid size
112,174,128, pixel 0.825,0.825,0.825, shown at level 2.04, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v9.mrc as #1, grid size
128,142,82, pixel 0.825,0.825,0.825, shown at level 0.0852, step 1, values
float32  
Opened nhWT_Ca2+_closed_3DRct286_C2_LP10_membrane_v3.mrc as #14, grid size
162,176,90, pixel 0.825,0.825,0.825, shown at level 0.008, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v10.mrc as #15, grid size
128,142,80, pixel 0.825,0.825,0.825, shown at level 0.038, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v11.mrc as #9, grid size
128,142,82, pixel 0.825,0.825,0.825, shown at level 0.05, step 1, values
float32  
Log from Tue Oct 4 15:54:32 2022UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  

> open
> D:\\\TMEM16\\\nhTMEM16\\\WT\\\DOPCDOPG_Ca\\\segmentation\\\segmentation_all_lipids_091822-v4.cxs

Opened nhWT_Closed_combined map-071222_lipids_all_v2.mrc as #3, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.0556, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v3.mrc as #4, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.0702, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v4.mrc as #5, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.08, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v5.mrc as #6, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.0158, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipid918.mrc as #7, grid size 36,98,36,
pixel 0.825,0.825,0.825, shown at level 0.0157, step 1, values float32  
Opened nhWT_Closed_combined map-071222_lipid918_partial.mrc as #8, grid size
24,82,24, pixel 0.825,0.825,0.825, shown at level 0.000318, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_protein.mrc as #2, grid size
112,174,128, pixel 0.825,0.825,0.825, shown at level 2.04, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v9.mrc as #1, grid size
128,142,82, pixel 0.825,0.825,0.825, shown at level 0.0852, step 1, values
float32  
Opened nhWT_Ca2+_closed_3DRct286_C2_LP10_membrane_v3.mrc as #14, grid size
162,176,90, pixel 0.825,0.825,0.825, shown at level 0.008, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v10.mrc as #15, grid size
128,142,80, pixel 0.825,0.825,0.825, shown at level 0.038, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v11.mrc as #9, grid size
128,142,82, pixel 0.825,0.825,0.825, shown at level 0.05, step 1, values
float32  
Log from Sun Sep 18 09:06:05 2022UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  

> open
> D:\\\TMEM16\\\nhTMEM16\\\WT\\\DOPCDOPG_Ca\\\segmentation\\\segmentation_all_lipids_071722-v3.cxs

Opened nhWT_Closed_combined map-071222_lipids_all_v2.mrc as #3, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.0556, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v3.mrc as #4, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.0702, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v4.mrc as #5, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.08, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v5.mrc as #6, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.0158, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipid918.mrc as #7, grid size 36,98,36,
pixel 0.825,0.825,0.825, shown at level 0.0157, step 1, values float32  
Opened nhWT_Closed_combined map-071222_lipid918_partial.mrc as #8, grid size
24,82,24, pixel 0.825,0.825,0.825, shown at level 0.000318, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_protein.mrc as #2, grid size
112,174,128, pixel 0.825,0.825,0.825, shown at level 2.04, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v9.mrc as #1, grid size
128,142,82, pixel 0.825,0.825,0.825, shown at level 0.0852, step 1, values
float32  
Opened nhWT_Ca2+_closed_3DRct286_C2_LP10_membrane_v3.mrc as #14, grid size
162,176,90, pixel 0.825,0.825,0.825, shown at level 0.00809, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v10.mrc as #15, grid size
128,142,80, pixel 0.825,0.825,0.825, shown at level 0.038, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v11.mrc as #9, grid size
128,142,82, pixel 0.825,0.825,0.825, shown at level 0.038, step 1, values
float32  
Log from Tue Jul 19 16:52:25 2022UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  

> open
> D:\\\TMEM16\\\nhTMEM16\\\WT\\\DOPCDOPG_Ca\\\segmentation\\\segmentation_all_lipids_071722-v2.cxs

Opened nhWT_Closed_combined map-071222_lipids_all_v2.mrc as #3, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.0556, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v3.mrc as #4, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.0702, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v4.mrc as #5, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.08, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v5.mrc as #6, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.0158, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipid918.mrc as #7, grid size 36,98,36,
pixel 0.825,0.825,0.825, shown at level 0.0157, step 1, values float32  
Opened nhWT_Closed_combined map-071222_lipid918_partial.mrc as #8, grid size
24,82,24, pixel 0.825,0.825,0.825, shown at level 0.000318, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v6.mrc as #9, grid size
128,142,86, pixel 0.825,0.825,0.825, shown at level 0.0442, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v7.mrc as #10, grid size
128,142,82, pixel 0.825,0.825,0.825, shown at level 0.0419, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_protein.mrc as #2, grid size
112,174,128, pixel 0.825,0.825,0.825, shown at level 2.04, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v8.mrc as #11, grid size
128,142,82, pixel 0.825,0.825,0.825, shown at level 0.03, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v9.mrc as #1, grid size
128,142,82, pixel 0.825,0.825,0.825, shown at level 0.0522, step 1, values
float32  
Log from Sun Jul 17 01:58:24 2022UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  

> open
> D:\\\TMEM16\\\nhTMEM16\\\WT\\\DOPCDOPG_Ca\\\segmentation\\\segmentation_all_lipids_071722.cxs

Opened nhWT_Closed_combined map-071222_lipids_all_v2.mrc as #3, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.0556, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v3.mrc as #4, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.0702, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v4.mrc as #5, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.08, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v5.mrc as #6, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.0158, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipid918.mrc as #7, grid size 36,98,36,
pixel 0.825,0.825,0.825, shown at level 0.0157, step 1, values float32  
Opened nhWT_Closed_combined map-071222_lipid918_partial.mrc as #8, grid size
24,82,24, pixel 0.825,0.825,0.825, shown at level 0.000318, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v6.mrc as #9, grid size
128,142,86, pixel 0.825,0.825,0.825, shown at level 0.0442, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v7.mrc as #10, grid size
128,142,82, pixel 0.825,0.825,0.825, shown at level 0.0419, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_protein.mrc as #2, grid size
112,174,128, pixel 0.825,0.825,0.825, shown at level 2.04, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v8.mrc as #11, grid size
128,142,82, pixel 0.825,0.825,0.825, shown at level 0.0359, step 1, values
float32  
Log from Sun Jul 17 01:38:40 2022UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open
> ""D:\\\TMEM16\\\nhTMEM16\\\WT\\\DOPCDOPG_Ca\\\segmentation\\\nhWT_Closed_combined
> map-071222_liipids_all_v1.mrc""

Opened nhWT_Closed_combined map-071222_liipids_all_v1.mrc as #1, grid size
144,162,124, pixel 0.825,0.825,0.825, shown at level 0.236, step 1, values
float32  

> volume #1 level 0.1403

> lighting soft

> volume #1 level 0.1066

> lighting simple

> lighting full

> lighting soft

> volume #1 level 0.07287

> color #1 red models transparency 0

> color #1 #aa0000 models transparency 0

> set bgColor white

> color #1 #aa8496 models transparency 0

> color #1 #aa475d models transparency 0

> color #1 #aa343c models transparency 0

> open
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/nh16_WT_closed_DO_Final.pdb

Chain information for nh16_WT_closed_DO_Final.pdb #2  
---  
Chain | Description  
A B | No description available  
  

> volume #1 level 0.07849

> open ""D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/nhWT_Closed_combined
> map-071222_lipids_all_v2.mrc""

Opened nhWT_Closed_combined map-071222_lipids_all_v2.mrc as #3, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.347, step 1, values
float32  

> volume #3 level 0.1076

> volume #3 level 0.06084

> volume #3 color #9bff9e

> lighting soft

> lighting simple

> lighting soft

> volume #3 level 0.05564

> open ""D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/nhWT_Closed_combined
> map-071222_lipids_all_v3.mrc""

Opened nhWT_Closed_combined map-071222_lipids_all_v3.mrc as #4, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.345, step 1, values
float32  

> volume #4 level 0.09175

> volume #4 color #ffcb81

> volume #4 color #75ff3a

> volume #4 color #4cc6ff

> volume #4 color #ffdd55

> volume #4 color #ff557f

> volume #4 color #aa557f

> volume #4 color #55aaff

[Repeated 1 time(s)]

> volume #4 color red

> volume #4 color #ff007f

> volume #4 color #ff0019

> volume #4 color #ff77ab

> volume #4 level 0.0702

[Repeated 1 time(s)]

> open ""D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/nhWT_Closed_combined
> map-071222_lipids_all_v4.mrc""

Opened nhWT_Closed_combined map-071222_lipids_all_v4.mrc as #5, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.341, step 1, values
float32  

> volume #5 level 0.08537

> volume #5 color #ff4174

> volume #5 level 0.08004

[Repeated 1 time(s)]

> open ""D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/nhWT_Closed_combined
> map-071222_lipids_all_v5.mrc""

Opened nhWT_Closed_combined map-071222_lipids_all_v5.mrc as #6, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.337, step 1, values
float32  

> volume #6 level 0.0634

> volume #6 level 0.1108

> volume #6 level 0.05286

> volume #6 color #ff75f4

> volume #6 color #ff5ae1

> volume #6 color #f894ff

> volume #6 color #aaffa1

> volume #6 color #a8ff9e

> volume #6 level 0.1792

> volume #6 level 0.03162

> open ""D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/nhWT_Closed_combined
> map-071222_lipid918.mrc""

Opened nhWT_Closed_combined map-071222_lipid918.mrc as #7, grid size 36,98,36,
pixel 0.825,0.825,0.825, shown at level 1.69e-05, step 1, values float32  

> volume #7 level 0.0107

> volume #7 level 0.01573

> open ""D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/nhWT_Closed_combined
> map-071222_lipid918_partial.mrc""

Opened nhWT_Closed_combined map-071222_lipid918_partial.mrc as #8, grid size
24,82,24, pixel 0.825,0.825,0.825, shown at level 1.22e-06, step 1, values
float32  

> volume #6 level 0.06323

> volume #8 level 0.0003644

> volume #8 level 0.0006809

> volume #8 level 0.0003178

> open ""D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/nhWT_Closed_combined
> map-071222_lipids_all_v6.mrc""

Opened nhWT_Closed_combined map-071222_lipids_all_v6.mrc as #9, grid size
128,142,86, pixel 0.825,0.825,0.825, shown at level 0.451, step 1, values
float32  

> volume #9 level 0.08837

> volume #9 level 0.07071

> volume #9 level 0.04421

> open ""D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/nhWT_Closed_combined
> map-071222_lipids_all_v7.mrc""

Opened nhWT_Closed_combined map-071222_lipids_all_v7.mrc as #10, grid size
128,142,82, pixel 0.825,0.825,0.825, shown at level 0.43, step 1, values
float32  

> volume #10 level 0.1036

> volume #10 level 0.07015

> volume #10 level 0.1036

> volume #10 level 0.07015

> volume #10 level 0.04504

> lighting simple

> lighting soft

> lighting full

> lighting soft

> volume #10 level 0.01674

> volume #10 level 0.02511

> lighting full

> lighting soft

> color #2 #eb90df transparency 0

> color #2 #eb6bde transparency 0

> color #2 #eb8ce2 transparency 0

> color #2 #eb6ede transparency 0

> color #10 #94e57e models transparency 0

> color #10 #dee58d models transparency 0

> color #10 #6bbae5 models transparency 0

> lighting soft

> close #2

> open ""D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/nhWT_Closed_combined
> map-071222_protein.mrc""

Opened nhWT_Closed_combined map-071222_protein.mrc as #2, grid size
112,174,128, pixel 0.825,0.825,0.825, shown at level 7.15, step 1, values
float32  

> volume #2 level 2.143

> volume #2 level 0.6699

> volume #2 level 2.208

> volume #10 level 0.01674

> volume #10 level 0.04185

[Repeated 1 time(s)]

> open ""D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/nhWT_Closed_combined
> map-071222_lipids_all_v8.mrc""

Opened nhWT_Closed_combined map-071222_lipids_all_v8.mrc as #11, grid size
128,142,82, pixel 0.825,0.825,0.825, shown at level 0.357, step 1, values
float32  

> volume #11 level 0.0414

[Repeated 1 time(s)]

> volume #2 color #81a8cc

> volume #11 color #b21e61

> volume #2 color #cccccc

> volume #2 color #b9b9b9

> volume #11 color #b94a62

> volume #11 color red

> volume #11 color #ff007f

> volume #11 color #507fa3

> volume #11 color #4c85a3

> volume #11 color #5b9fc3

> volume #11 color #c36d6d

> volume #11 color #c35050

> volume #11 level 0.01988

> volume #6 level 0.01581

> volume #11 level 0.007172

> volume #11 level 0.03586

> volume #2 level 2.863

> volume #2 level 2.405

> volume #2 level 2.077

> volume #2 level 2.045

> close #1

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/segmentation_all_lipids_071722.cxs

——— End of log from Sun Jul 17 01:38:40 2022 ———

opened ChimeraX session  

> volume #11 level 0.02

> volume #11 level 0.01

> volume #11 level 0.03

> ui tool show ""Side View""

> save D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/groove-view.tif width
> 1340 height 775 supersample 3

> save D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/groove-view.tif width
> 2000 height 1157 supersample 3

> save D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/side-view.tif width 2000
> height 1157 supersample 3

> save D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/top-view.tif width 2000
> height 1157 supersample 3

> open ""D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/nhWT_Closed_combined
> map-071222_lipids_all_v9.mrc""

Opened nhWT_Closed_combined map-071222_lipids_all_v9.mrc as #1, grid size
128,142,82, pixel 0.825,0.825,0.825, shown at level 0.416, step 1, values
float32  

> volume #1 color #b25a54

> volume #1 color #b24031

> volume #1 level 0.05215

> open
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/lipids_in_model_resi901-918.pdb

> volume #1 color #b2aa6a

> volume #1 color #54adb2

> volume #1 color #64b256

> volume #1 color #6abe5c

> volume #1 color #5cb9be

> volume #1 color #be5ca4

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/segmentation_all_lipids_071722-v2.cxs

——— End of log from Sun Jul 17 01:58:24 2022 ———

opened ChimeraX session  

> lighting soft

> lighting full

> lighting soft

> lighting simple

> lighting soft

> open
> D:/TMEM16/nhTMEM16/lowpass_filtered_maps/nhWT_Ca2+_closed_3DRct286_C2_LP10_membrane_v1.mrc

Opened nhWT_Ca2+_closed_3DRct286_C2_LP10_membrane_v1.mrc as #13, grid size
152,168,84, pixel 0.825,0.825,0.825, shown at level 0.0173, step 1, values
float32  

> volume #13 level 0.0008683

> volume #13 level 0.0004135

> volume #1 color white

> volume #1 color #ff77fd

> volume #13 color #ff77fd

> volume #13 color #9d499d

> volume #13 color #cc5fcc

> close #13

> open
> D:/TMEM16/nhTMEM16/lowpass_filtered_maps/nhWT_Ca2+_closed_3DRct286_C2_LP10_membrane_v2.mrc

Opened nhWT_Ca2+_closed_3DRct286_C2_LP10_membrane_v2.mrc as #13, grid size
152,168,84, pixel 0.825,0.825,0.825, shown at level 0.0181, step 1, values
float32  

> volume #13 level 0.001102

> volume #13 color #d3664a

> volume #1 color #ff995e

> volume #1 color white

> volume #1 color #ff995e

> volume #1 color #87e9ff

> volume #1 color #ff5479

> volume #1 color white

> volume #1 color #c4acff

> volume #1 color #ff7366

> volume #1 color #ff7070

> volume #1 color #ff995e

> volume #1 color #ff7070

[Repeated 1 time(s)]

> volume #1 color #ff995e

> volume #13 color #ff995e

> transparency #13 50

> transparency #13 80

> volume #13 level 0.005822

> volume #13 level 0.001828

> volume #1 color #ff7070

> volume #13 color #ff707033

> volume #1 level 0.1431

> volume #1 level 0.06042

> volume #1 level 0.01908

> transparency #13 90

> transparency #13 80

> volume #13 color #ffffff33

> volume #13 color #75000233

> volume #13 color #62000233

> volume #13 color #a6010333

> volume #13 color #a6090c33

> volume #1 color #a6090c

> volume #1 color #fa0e16

> volume #1 color #fa946c

> volume #13 level 0.007015

> volume #13 level 0.007223

> volume #13 level 0.00577

> volume #13 level 0.008104

> open
> D:/TMEM16/nhTMEM16/lowpass_filtered_maps/nhWT_Ca2+_closed_3DRct286_C2_LP10_membrane_v3.mrc

Opened nhWT_Ca2+_closed_3DRct286_C2_LP10_membrane_v3.mrc as #14, grid size
162,176,90, pixel 0.825,0.825,0.825, shown at level 0.0263, step 1, values
float32  

> volume #14 level 0.02625

> volume #14 level 0.004769

> volume #14 color #ff995e

> transparency #14 80

> volume #14 level 0.005614

> show #!6 models

> hide #!1 models

> show #!1 models

> hide #!2 models

> show #!2 models

> hide #!1 models

> show #!1 models

> hide #!6 models

> show #!6 models

> hide #!6 models

> show #!6 models

> hide #!6 models

> show #!6 models

> hide #!6 models

> show #!6 models

> hide #!6 models

> show #!6 models

> hide #!6 models

> show #!6 models

> hide #!6 models

> show #!8 models

> hide #!8 models

> show #!3 models

> hide #!3 models

> show #!3 models

> hide #!3 models

> ui tool show ""Side View""

> volume #14 level 0.008714

> volume #1 level 0.08522

> open ""D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/nhWT_Closed_combined
> map-071222_lipids_all_v10.mrc""

Opened nhWT_Closed_combined map-071222_lipids_all_v10.mrc as #15, grid size
128,142,80, pixel 0.825,0.825,0.825, shown at level 0.385, step 1, values
float32  

> volume #15 level 0.02332

> volume #15 level 0.06261

> volume #15 level 0.03904

> open ""D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/nhWT_Closed_combined
> map-071222_lipids_all_v11.mrc""

Opened nhWT_Closed_combined map-071222_lipids_all_v11.mrc as #16, grid size
128,142,80, pixel 0.825,0.825,0.825, shown at level 0.101, step 1, values
float32  

> volume #16 level 0.02904

> volume #16 level 0.01634

> volume #16 level 0.01271

> close #16

> volume #15 color #ff995e

> volume #15 level 0.08618

> volume #15 level 0.0469

> volume #15 level 0.01547

> volume #15 level 0.01571

> volume #15 level 0.08643

> volume #15 level 0.06286

> volume #15 level 0.055

> volume #15 level 0.03929

> volume #15 level 0.08

> volume #15 level 0.038

> close #13

> close #11

> close #10

> close #9

> open ""D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/nhWT_Closed_combined
> map-071222_lipids_all_v11.mrc""

Opened nhWT_Closed_combined map-071222_lipids_all_v11.mrc as #9, grid size
128,142,82, pixel 0.825,0.825,0.825, shown at level 0.411, step 1, values
float32  

> volume #9 level 0.09106

> volume #9 level 0.038

> volume #9 color #ff995e

> volume #9 color #53eeff

> volume #9 color #3cb4ff

> volume #9 color #38aaf0

> volume #9 color #f04c0b

> volume #9 color #a6090c

> volume #9 color #aa0000

> volume #9 color #9e0000

> volume #9 color #ff007f

> volume #9 color #ff557f

> volume #9 color #9f0101

> volume #9 color #530019

> volume #9 color #a30a0a

> volume #9 color white

> volume #9 color #a30a0a

> volume #14 color #a30a0a33

> volume #14 color #a50a0a33

> volume #9 color #cf0d0d

> volume #9 color yellow

> volume #9 color #b6b600

> volume #9 color white

> volume #9 color #c7c733

> volume #14 color #c7c73333

> volume #14 color #c7ab1e33

> volume #14 color #b1c7a233

> volume #14 color #5500ff33

> volume #9 color #1a22c7

> volume #9 color #5796c7

> volume #9 color #6cb3ff

> volume #9 color #558cc8

> volume #9 color blue

> volume #9 color #55aaff

> volume #9 color #c7c733

> volume #9 color #ff55ff

> volume #9 color #cc91b7

> volume #9 color white

> volume #9 color #ac6da0

> volume #9 color #d98aca

> volume #9 color #ff995e

> volume #9 color #ac6da0

> volume #9 color #ffa2ee

> volume #9 color #ee8c58

> volume #9 color #ac6da0

> volume #9 color #dc8ccd

> volume #14 color #dc8ccd33

> volume #14 color #6cb3ff33

> volume #14 color #ff995e33

> volume #9 color #ff995e

> volume #9 color #6cb3ff

> volume #9 color #dc8ccd

> volume #9 color #a30a0a

> volume #9 color #dc8ccd

> volume #14 color #a30a0a33

> volume #14 color #dc8ccd33

> volume #14 color #ff995e33

> volume #14 color #ff547933

> volume #14 color #ff995e33

> volume #14 color #dc8ccd33

> volume #14 color #ff995e33

> volume #9 color #ff995e

> volume #9 color #a30a0a

> volume #14 color #a30a0a33

> volume #14 color #ff101033

> volume #14 color #84080833

> volume #14 color #a30a0a33

> volume #9 color #b30b0b

> volume #9 color #b30000

> volume #9 color #b30003

> volume #9 color #b31920

> volume #9 color #b32528

> volume #14 color #b3252833

> volume #14 color #eb313733

> volume #9 color #a12126

> volume #14 color #a1212633

> volume #14 color #ff995e33

> volume #9 color #ff995e

> volume #9 color #6cb3ff

> volume #14 color #a1212633

> volume #14 color #ff547933

> volume #14 color #dc8ccd33

> volume #14 color #c7c73333

> volume #14 color #ff995e33

> volume #9 color #dc8ccd

> volume #9 color #ff7070

> volume #9 color #ff995e

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/segmentation_all_lipids_071722-v3.cxs

> volume #9 color #b36a42

> volume #9 color #fa935c

> volume #9 color white

> volume #9 color #ffba5a

> volume #14 color #ffba5a33

> transparency #14 60

> transparency #14 90

> transparency #14 70

> transparency #14 80

> volume #14 level 0.005403

> volume #14 level 0.008009

> ui tool show ""Side View""

> volume #14 level 0.008087

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/segmentation_all_lipids_071722-v3.cxs
> includeMaps true

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/figures/lp_membrane+lipids+protein_side_v1.tif
> width 2000 height 1095 supersample 3

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/figures/lipids+protein_side_v1.tif
> width 2000 height 1095 supersample 3

> ui tool show ""Side View""

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/figures/lp_membrane+lipids+protein_groove_v1.tif
> width 2000 height 1095 supersample 3

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/figures/lipids+protein_groove_v1.tif
> width 2000 height 1095 supersample 3

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/figures/lp_membrane+lipids+protein_top_v1.tif
> width 2000 height 1095 supersample 3

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/figures/lipids+protein_top_v1.tif
> width 2000 height 1095 supersample 3

> ui tool show ""Model Panel""

> hide #12 models

> show #12 models

> hide #12 models

> show #12 models

> hide #12 models

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/figures/lipids+protein_top_v1.tif
> width 1415 height 775 supersample 1

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/figures/lipids+protein_top_v1.tif
> width 1415 height 775 supersample 4

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/figures/lipids+protein_top_v1.tif
> width 2000 height 1095 supersample 3

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/figures/lp_membrane+lipids+protein_top_v1.tif
> width 2000 height 1095 supersample 3

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/figures/lp_membrane+lipids+protein_side_v1.tif
> width 2000 height 1095 supersample 3

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/figures/lipids+protein_side_v1.tif
> width 2000 height 1095 supersample 3

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/figures/lp_membrane+lipids+protein_groove_v1.tif
> width 2000 height 1095 supersample 3

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/figures/lipids+protein_groove_v1.tif
> width 2000 height 1095 supersample 3

> transparency #14 90

> transparency #14 85

> transparency #14 90

> transparency #14 86

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/figures/lp_membrane+lipids+protein_groove_v2.tif
> width 2000 height 1095 supersample 3

> transparency #14 90

> transparency #14 86

> transparency #14 90

> transparency #14 86

> transparency #14 90

> transparency #14 86

> transparency #14 90

> transparency #14 86

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/figures/lp_membrane+lipids+protein_side_v2.tif
> width 2000 height 1095 supersample 3

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/figures/lp_membrane+lipids+protein_top_v2.tif
> width 2000 height 1095 supersample 3

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/segmentation_all_lipids_071722-v3.cxs

——— End of log from Tue Jul 19 16:52:25 2022 ———

opened ChimeraX session  

> hide #!2 models

> show #!2 models

> color #2 #4169E1

> volume #14 level 0.009

> volume #14 level 0.008

> volume #9 level 0.03

> volume #9 level 0.04

> volume #9 level 0.05

> show #!1 models

> hide #!1 models

> show #!15 models

> hide #!15 models

> show #12 models

> hide #12 models

> show #!8 models

> hide #!8 models

> show #!8 models

> hide #!8 models

> show #!8 models

> hide #!8 models

> show #!8 models

> hide #!8 models

> ui tool show ""Model Panel""

> show #12 models

> hide #12 models

> hide #!9 models

> show #12 models

> hide #12 models

> show #12 models

> show #!9 models

> hide #!9 models

> show #!9 models

> hide #!9 models

> show #!9 models

> hide #!9 models

> show #!9 models

> hide #!9 models

> show #!9 models

> hide #!9 models

> show #!9 models

> hide #!9 models

> show #!9 models

> color #12 #c5cd81 transparency 0

> color #12 #a7cd2a transparency 0

> hide #!9 models

> show #!9 models

> hide #!9 models

> color #12 byelement

> color #12 yellow transparency 0

> color #12 byhetero

> hide #!14 models

> show #!9 models

> hide #!9 models

> show #!9 models

> hide #!9 models

> show #!9 models

> hide #!9 models

> show #!9 models

> hide #!9 models

> color #9 yellow models transparency 0

> show #!9 models

> hide #!9 models

> color #9 #ffba5a models transparency 0

> show #!9 models

> hide #!9 models

> show #!9 models

> show #!14 models

> hide #12 models

> show #12 models

> hide #12 models

> show #12 models

> hide #!14 models

> show #!14 models

> hide #!14 models

> hide #!9 models

> show #!9 models

> hide #!9 models

> show #!9 models

> hide #!9 models

> show #!9 models

> hide #!9 models

> show #!9 models

> hide #!9 models

> show #!9 models

> volume #9 level 0.045

> volume #9 level 0.05

> volume #9 level 0.06

> volume #9 level 0.05

> hide #12 models

> show #!14 models

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/segmentation_all_lipids_091822-v4.cxs

——— End of log from Sun Sep 18 09:06:05 2022 ———

opened ChimeraX session  

> color #2 #4184e1 models transparency 0

> color #2 #2674e1 models transparency 0

> color #2 #246fd7 models transparency 0

> color #2 #226dd7 models transparency 0

> color #2 #4f22d7 models transparency 0

> color #2 #3600d7 models transparency 0

> color #2 #4000ff models transparency 0

> color #2 #d700ff models transparency 0

> color #2 #d7d7ff models transparency 0

> color #2 #d7d7d7 models transparency 0

> lighting soft

> lighting full

> lighting soft

> lighting simple

> lighting soft

> hide #!9 models

> show #!9 models

> hide #!14 models

> show #!14 models

> ui tool show ""Side View""

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/segmentation_all_lipids_100422-v6.cxs
> includeMaps true

——— End of log from Tue Oct 4 15:54:32 2022 ———

opened ChimeraX session  

> transparency #14 0

> movie record

> movie crossfade 25

> transparency #14 80

> turn y 1 90

> wait

Error processing trigger ""frame drawn"":  
movie crossfade cannot be used until one frame has been recorded.  

> turn -y 1 90

> wait

> turn x 1 90

> wait

> turn -x 1 90

> movie encode C:\Users\fengz/Desktop/spin5.mp4

Movie encoding failed because no images were recorded.  

> movie record

> movie crossfade 25

> transparency #14 80

> turn y 1 90

> wait

> turn -y 1 90

> wait

> turn x 1 90

> wait

> turn -x 1 90

> movie encode

Movie encoding failed because no images were recorded.  

> transparency #14 0

> movie record

> movie crossfade 25

> transparency #14 80

> turn y 1 90

> turn -y 1 90

> turn x 1 90

> turn -x 1 90

> movie encode

Movie encoding failed because no images were recorded.  

> movie encode

Movie encoding failed because no images were recorded.  

> movie encode

Movie encoding failed because no images were recorded.  

> movie record

> movie crossfade 25

> transparency #14 80

> turn y 1 90

> wait 20

> turn -y 1 90

> wait 20

> turn x 1 90

> wait 20

> turn -x 1 90

> movie encode

Movie encoding failed because no images were recorded.  

> movie encode

Movie encoding failed because no images were recorded.  

> movie stop

Not currently recording  

> movie encode

Movie encoding failed because no images were recorded.  

> turn -x 1 90

> turn x 1 90

> transparency #14 0

> movie record

> movie crossfade 25

> transparency #14 80

Traceback (most recent call last):  
File ""D:\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\triggerset.py"", line
134, in invoke  
return self._func(self._name, data)  
File ""D:\ChimeraX 1.3\bin\lib\site-packages\chimerax\movie\movie.py"", line
177, in capture_image  
self.save_crossfade_images()  
File ""D:\ChimeraX 1.3\bin\lib\site-packages\chimerax\movie\movie.py"", line
206, in save_crossfade_images  
imagef = Image.blend(image1, image2, float(f)/(frames-1))  
File ""D:\ChimeraX 1.3\bin\lib\site-packages\PIL\Image.py"", line 3067, in blend  
return im1._new(core.blend(im1.im, im2.im, alpha))  
ValueError: images do not match  
  
Error processing trigger ""frame drawn"":  
ValueError: images do not match  
  
File ""D:\ChimeraX 1.3\bin\lib\site-packages\PIL\Image.py"", line 3067, in blend  
return im1._new(core.blend(im1.im, im2.im, alpha))  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 512.72
OpenGL renderer: NVIDIA GeForce RTX 3060 Laptop GPU/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: Alienware
Model: Alienware m15 Ryzen Ed. R5
OS: Microsoft Windows 11 Home (Build 22000)
Memory: 16,483,872,768
MaxProcessMemory: 137,438,953,344
CPU: 16 AMD Ryzen 7 5800H with Radeon Graphics         
OSLanguage: en-US
Locale: ('en_US', 'cp1252')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2021.10.8
    cftime: 1.5.1.1
    charset-normalizer: 2.0.9
    ChimeraX-AddCharge: 1.2.2
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.2.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.31
    ChimeraX-AtomicLibrary: 4.2
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.0
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.6.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.2
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5
    ChimeraX-CommandLine: 1.1.5
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.3
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.4
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.4
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.4
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.2.6
    ChimeraX-ModelPanel: 1.2.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.7
    ChimeraX-PDB: 2.6.5
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.4.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.6.1
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.13.7
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    comtypes: 1.1.10
    cxservices: 1.1
    cycler: 0.11.0
    Cython: 0.29.24
    decorator: 5.1.0
    docutils: 0.17.1
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 3.6.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.21
    imagecodecs: 2021.4.28
    imagesize: 1.3.0
    ipykernel: 5.5.5
    ipython: 7.23.1
    ipython-genutils: 0.2.0
    jedi: 0.18.0
    Jinja2: 3.0.1
    jupyter-client: 6.1.12
    jupyter-core: 4.9.1
    kiwisolver: 1.3.2
    lxml: 4.6.3
    lz4: 3.1.3
    MarkupSafe: 2.0.1
    matplotlib: 3.4.3
    matplotlib-inline: 0.1.3
    msgpack: 1.0.2
    netCDF4: 1.5.7
    networkx: 2.6.3
    numexpr: 2.8.0
    numpy: 1.21.2
    openvr: 1.16.801
    packaging: 21.3
    ParmEd: 3.2.0
    parso: 0.8.3
    pickleshare: 0.7.5
    Pillow: 8.3.2
    pip: 21.2.4
    pkginfo: 1.7.1
    prompt-toolkit: 3.0.23
    psutil: 5.8.0
    pycollada: 0.7.1
    pydicom: 2.1.2
    Pygments: 2.10.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.6
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.2
    pytz: 2021.3
    pywin32: 228
    pyzmq: 22.3.0
    qtconsole: 5.1.1
    QtPy: 1.11.3
    RandomWords: 0.3.0
    requests: 2.26.0
    scipy: 1.7.1
    setuptools: 57.5.0
    sfftk-rw: 0.7.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.2.0
    sphinx-autodoc-typehints: 1.12.0
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2021.4.8
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.7
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.0
    wheel-filename: 1.3.0
    WMI: 1.5.1

}}}
"	defect	closed	normal		Scenes/Animation		can't reproduce						all	ChimeraX