id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 7749 Various movie problems absmeier@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-10.14.6-x86_64-i386-64bit ChimeraX Version: 1.4 (2022-06-03 23:39:42 UTC) Description When I try to record a movie and I start it with movie record, I get an error message, when I type movie duplicate 60. When I then press movie encode, I get an message no frames where written. Log: UCSF ChimeraX version: 1.4 (2022-06-03) © 2016-2022 Regents of the University of California. All rights reserved. > open /Users/absmeier/Desktop/C4_movie.cxs format session Opened run_class001Refine292.mrc as #1, grid size 150,150,150, pixel 1.65, shown at level 0.02, step 1, values float32 Opened run_class001Refine289.mrc as #3, grid size 150,150,150, pixel 1.65, shown at level 0.02, step 1, values float32 Opened run_class001Refine291.mrc as #5, grid size 150,150,150, pixel 1.65, shown at level 0.02, step 1, values float32 Opened run_class001Refine287.mrc as #6, grid size 150,150,150, pixel 1.65, shown at level 0.02, step 1, values float32 Log from Thu Oct 6 12:54:40 2022UCSF ChimeraX version: 1.4 (2022-06-03) © 2016-2022 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/absmeier/Desktop/C4_figures/run_class001Refine292.mrc Opened run_class001Refine292.mrc as #1, grid size 150,150,150, pixel 1.65, shown at level 0.0176, step 1, values float32 > open /Users/absmeier/Desktop/C4_figures/run_class001Refine288.mrc Opened run_class001Refine288.mrc as #2, grid size 150,150,150, pixel 1.65, shown at level 0.0142, step 1, values float32 > open /Users/absmeier/Desktop/C4_figures/run_class001Refine289.mrc Opened run_class001Refine289.mrc as #3, grid size 150,150,150, pixel 1.65, shown at level 0.0196, step 1, values float32 > open /Users/absmeier/Desktop/C4_figures/run_class001Refine290.mrc Opened run_class001Refine290.mrc as #4, grid size 150,150,150, pixel 1.65, shown at level 0.0141, step 1, values float32 > open /Users/absmeier/Desktop/C4_figures/run_class001Refine291.mrc Opened run_class001Refine291.mrc as #5, grid size 150,150,150, pixel 1.65, shown at level 0.0188, step 1, values float32 > open /Users/absmeier/Desktop/C4_figures/run_class001Refine287.mrc Opened run_class001Refine287.mrc as #6, grid size 150,150,150, pixel 1.65, shown at level 0.0182, step 1, values float32 > set bgColor white > volume #1 level 0.02 > volume #2 level 0.02 > volume #3 level 0.02 > volume #4 level 0.02 > volume #5 level 0.02 > volume #6 level 0.02 > volume #2 color darkgrey > volume #1 color darkgrey > volume #3 color darkgrey > volume #4 color darkgrey > volume #5 color darkgrey > volume #6 color darkgrey > close #2 > fitmap #1 inMap #3 Fit map run_class001Refine292.mrc in map run_class001Refine289.mrc using 29384 points correlation = 0.9834, correlation about mean = 0.8614, overlap = 35.16 steps = 72, shift = 1.35, angle = 2.81 degrees Position of run_class001Refine292.mrc (#1) relative to run_class001Refine289.mrc (#3) coordinates: Matrix rotation and translation 0.99917041 -0.03287081 0.02404168 1.17114909 0.03220539 0.99910123 0.02756001 -6.11647263 -0.02492599 -0.02676287 0.99933100 7.17479263 Axis -0.55490126 0.50019850 0.66474511 Axis point 207.73291637 48.28170881 0.00000000 Rotation angle (degrees) 2.80564851 Shift along axis 1.06008576 > fitmap #4 inMap #3 Fit map run_class001Refine290.mrc in map run_class001Refine289.mrc using 24253 points correlation = 0.9836, correlation about mean = 0.8387, overlap = 31.09 steps = 68, shift = 0.751, angle = 2.75 degrees Position of run_class001Refine290.mrc (#4) relative to run_class001Refine289.mrc (#3) coordinates: Matrix rotation and translation 0.99917227 -0.03047583 0.02694444 0.11866162 0.03115450 0.99919843 -0.02513742 0.34269563 -0.02615676 0.02595605 0.99932082 -0.50322014 Axis 0.53186081 0.55276046 0.64154497 Axis point -12.10694244 5.44929663 0.00000000 Rotation angle (degrees) 2.75313289 Shift along axis -0.07029829 > fitmap #5 inMap #3 Fit map run_class001Refine291.mrc in map run_class001Refine289.mrc using 31562 points correlation = 0.975, correlation about mean = 0.8276, overlap = 36.4 steps = 104, shift = 1.51, angle = 5.58 degrees Position of run_class001Refine291.mrc (#5) relative to run_class001Refine289.mrc (#3) coordinates: Matrix rotation and translation 0.99878772 -0.02400397 0.04297547 -2.62805487 0.02031434 0.99623142 0.08432247 -13.91907915 -0.04483759 -0.08334723 0.99551134 16.74188506 Axis -0.86253253 0.45173113 0.22798383 Axis point 0.00000000 192.13378655 172.56358844 Rotation angle (degrees) 5.57773569 Shift along axis -0.20401935 > fitmap #6 inMap #3 Fit map run_class001Refine287.mrc in map run_class001Refine289.mrc using 30358 points correlation = 0.9787, correlation about mean = 0.8403, overlap = 35.08 steps = 68, shift = 1.64, angle = 2.67 degrees Position of run_class001Refine287.mrc (#6) relative to run_class001Refine289.mrc (#3) coordinates: Matrix rotation and translation 0.99939714 -0.03345041 -0.00929686 6.15130124 0.03372393 0.99894992 0.03101217 -9.09315039 0.00824973 -0.03130701 0.99947577 2.14067578 Axis -0.66797989 -0.18807643 0.72002092 Axis point 279.45266078 161.73489732 0.00000000 Rotation angle (degrees) 2.67367495 Shift along axis -0.85740692 > close #4 > record movie Unknown command: record movie > movie record > movie duplicate 60 Traceback (most recent call last): File ""/Users/absmeier/Desktop/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/cmd_line/tool.py"", line 319, in execute cmd.run(cmd_text) File ""/Users/absmeier/Desktop/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/commands/cli.py"", line 2897, in run result = ci.function(session, **kw_args) File ""/Users/absmeier/Desktop/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/movie/moviecmd.py"", line 259, in movie_duplicate session.movie.postprocess('duplicate', frames) File ""/Users/absmeier/Desktop/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/movie/movie.py"", line 289, in postprocess self.capture_image() # Capture all frames right now. File ""/Users/absmeier/Desktop/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/movie/movie.py"", line 179, in capture_image self.save_duplicate_images() File ""/Users/absmeier/Desktop/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/movie/movie.py"", line 218, in save_duplicate_images image = Image.open(save_path) File ""/Users/absmeier/Desktop/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/PIL/Image.py"", line 2953, in open fp = builtins.open(filename, ""rb"") FileNotFoundError: [Errno 2] No such file or directory: '/var/folders/h8/f03mj0vx0jlbnp15mqj3p6xr0000gn/T/chimovie_gawD--0001.ppm' Populating font family aliases took 658 ms. Replace uses of missing font family "".SF NS Text"" with one that exists to avoid this cost. FileNotFoundError: [Errno 2] No such file or directory: '/var/folders/h8/f03mj0vx0jlbnp15mqj3p6xr0000gn/T/chimovie_gawD--0001.ppm' File ""/Users/absmeier/Desktop/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/PIL/Image.py"", line 2953, in open fp = builtins.open(filename, ""rb"") See log for complete Python traceback. > movie encode Movie encoding failed because no images were recorded. > movie record > movie encode Movie encoding failed because no images were recorded. > movie record > movie encode Movie encoding failed because no images were recorded. > save /Users/absmeier/Desktop/C4_movie.cxs ——— End of log from Thu Oct 6 12:54:40 2022 ——— opened ChimeraX session > movie encode No frames have been recorded > movie record > movie duplicate frames 60 Traceback (most recent call last): File ""/Users/absmeier/Desktop/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/cmd_line/tool.py"", line 319, in execute cmd.run(cmd_text) File ""/Users/absmeier/Desktop/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/commands/cli.py"", line 2897, in run result = ci.function(session, **kw_args) File ""/Users/absmeier/Desktop/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/movie/moviecmd.py"", line 259, in movie_duplicate session.movie.postprocess('duplicate', frames) File ""/Users/absmeier/Desktop/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/movie/movie.py"", line 289, in postprocess self.capture_image() # Capture all frames right now. File ""/Users/absmeier/Desktop/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/movie/movie.py"", line 179, in capture_image self.save_duplicate_images() File ""/Users/absmeier/Desktop/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/movie/movie.py"", line 218, in save_duplicate_images image = Image.open(save_path) File ""/Users/absmeier/Desktop/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/PIL/Image.py"", line 2953, in open fp = builtins.open(filename, ""rb"") FileNotFoundError: [Errno 2] No such file or directory: '/var/folders/h8/f03mj0vx0jlbnp15mqj3p6xr0000gn/T/chimovie_2Cw9--0001.ppm' Populating font family aliases took 610 ms. Replace uses of missing font family "".SF NS Text"" with one that exists to avoid this cost. FileNotFoundError: [Errno 2] No such file or directory: '/var/folders/h8/f03mj0vx0jlbnp15mqj3p6xr0000gn/T/chimovie_2Cw9--0001.ppm' File ""/Users/absmeier/Desktop/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/PIL/Image.py"", line 2953, in open fp = builtins.open(filename, ""rb"") See log for complete Python traceback. OpenGL version: 4.1 ATI-2.11.26 OpenGL renderer: AMD Radeon Pro 580X OpenGL Engine OpenGL vendor: ATI Technologies Inc. Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.3.0, Qt 6.3.0 Qt runtime version: 6.3.0 Qt platform: cocoa Hardware: Hardware Overview: Model Name: iMac Model Identifier: iMac19,1 Processor Name: Intel Core i9 Processor Speed: 3.6 GHz Number of Processors: 1 Total Number of Cores: 8 L2 Cache (per Core): 256 KB L3 Cache: 16 MB Hyper-Threading Technology: Enabled Memory: 16 GB Boot ROM Version: 1554.140.20.0.0 SMC Version (system): 2.46f12 Software: System Software Overview: System Version: macOS 10.14.6 (18G9323) Kernel Version: Darwin 18.7.0 Time since boot: 99 days 18:32 Graphics/Displays: Radeon Pro 580X: Chipset Model: Radeon Pro 580X Type: GPU Bus: PCIe PCIe Lane Width: x16 VRAM (Total): 8 GB Vendor: AMD (0x1002) Device ID: 0x67df Revision ID: 0x00c0 ROM Revision: 113-D0008A-042 VBIOS Version: 113-D0008A1X-009 EFI Driver Version: 01.B1.042 Metal: Supported, feature set macOS GPUFamily2 v1 Displays: iMac: Display Type: Built-In Retina LCD Resolution: 5120 x 2880 Retina Framebuffer Depth: 30-Bit Color (ARGB2101010) Main Display: Yes Mirror: Off Online: Yes Rotation: Supported Automatically Adjust Brightness: No Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.3 Babel: 2.10.1 backcall: 0.2.0 blockdiag: 3.0.0 certifi: 2021.10.8 cftime: 1.6.0 charset-normalizer: 2.0.12 ChimeraX-AddCharge: 1.2.3 ChimeraX-AddH: 2.1.11 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2.1 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.4.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.39.1 ChimeraX-AtomicLibrary: 7.0 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.1 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.1 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.7 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.2 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.1 ChimeraX-CommandLine: 1.2.3 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.4 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.1 ChimeraX-DistMonitor: 1.1.5 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.2 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.1.2 ChimeraX-Help: 1.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0 ChimeraX-Label: 1.1.1 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 2.0.6 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.7 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.5.5 ChimeraX-ModelPanel: 1.3.2 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.2 ChimeraX-OpenCommand: 1.9 ChimeraX-PDB: 2.6.6 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.6 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.1 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.8 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.0.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.1 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.18.3 ChimeraX-uniprot: 2.2 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.1.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.1.0 ChimeraX-Zone: 1.0 colorama: 0.4.4 cxservices: 1.2 cycler: 0.11.0 Cython: 0.29.26 debugpy: 1.6.0 decorator: 5.1.1 docutils: 0.17.1 entrypoints: 0.4 filelock: 3.4.2 fonttools: 4.33.3 funcparserlib: 1.0.0 grako: 3.16.5 h5py: 3.7.0 html2text: 2020.1.16 idna: 3.3 ihm: 0.27 imagecodecs: 2021.11.20 imagesize: 1.3.0 ipykernel: 6.6.1 ipython: 7.31.1 ipython-genutils: 0.2.0 jedi: 0.18.1 Jinja2: 3.0.3 jupyter-client: 7.1.0 jupyter-core: 4.10.0 kiwisolver: 1.4.2 line-profiler: 3.4.0 lxml: 4.7.1 lz4: 3.1.10 MarkupSafe: 2.1.1 matplotlib: 3.5.1 matplotlib-inline: 0.1.3 msgpack: 1.0.3 nest-asyncio: 1.5.5 netCDF4: 1.5.8 networkx: 2.6.3 numexpr: 2.8.1 numpy: 1.22.1 openvr: 1.16.802 packaging: 21.0 ParmEd: 3.4.3 parso: 0.8.3 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.0.1 pip: 21.3.1 pkginfo: 1.8.2 prompt-toolkit: 3.0.29 psutil: 5.9.0 ptyprocess: 0.7.0 pycollada: 0.7.2 pydicom: 2.2.2 Pygments: 2.11.2 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 PyQt6-commercial: 6.3.0 PyQt6-Qt6: 6.3.0 PyQt6-sip: 13.3.1 PyQt6-WebEngine-commercial: 6.3.0 PyQt6-WebEngine-Qt6: 6.3.0 python-dateutil: 2.8.2 pytz: 2022.1 pyzmq: 23.1.0 qtconsole: 5.3.0 QtPy: 2.1.0 RandomWords: 0.3.0 requests: 2.27.1 scipy: 1.7.3 setuptools: 59.8.0 sfftk-rw: 0.7.2 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 4.3.2 sphinx-autodoc-typehints: 1.15.2 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-community: 1.0.0 tables: 3.7.0 tifffile: 2021.11.2 tinyarray: 1.2.4 tornado: 6.1 traitlets: 5.1.1 urllib3: 1.26.9 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.37.1 wheel-filename: 1.3.0 }}} " defect closed normal Input/Output not a bug Elaine Meng all ChimeraX