id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 7621 Crash in event loop zhangmh@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-12.6-arm64-arm-64bit ChimeraX Version: 1.5.dev202209180803 (2022-09-18 08:03:07 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Thread 0x000000028a073000 (most recent call first): File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 576 in _handle_results File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x0000000289067000 (most recent call first): File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 528 in _handle_tasks File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x000000028805b000 (most recent call first): File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/selectors.py"", line 416 in select File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/connection.py"", line 936 in wait File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 499 in _wait_for_updates File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 519 in _handle_workers File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x000000028704f000 (most recent call first): File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 114 in worker File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x0000000286043000 (most recent call first): File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 114 in worker File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x0000000285037000 (most recent call first): File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 114 in worker File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x000000028402b000 (most recent call first): File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 114 in worker File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x000000028301f000 (most recent call first): File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 114 in worker File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x0000000282013000 (most recent call first): File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 114 in worker File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x0000000281007000 (most recent call first): File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 114 in worker File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x000000017fd0b000 (most recent call first): File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 114 in worker File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Current thread 0x000000010031c580 (most recent call first): File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py"", line 283 in event_loop File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 881 in init File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 1032 in File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 87 in _run_code File ""/private/var/folders/lk/v44dfm8j7rz4cp8gc_ggmdnh0000gn/T/AppTranslocation/8A983CE9-4F71-4AC6-9318-A5A3211FFC60/d/ChimeraX_techpreview.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 197 in _run_module_as_main {""app_name"":""ChimeraX"",""timestamp"":""2022-09-19 13:35:45.00 +0800"",""app_version"":""1.5.0"",""slice_uuid"":""a5992708-d5b4-36ec-ac0a-e525f6105b56"",""build_version"":""1.5.0.0"",""platform"":1,""bundleID"":""edu.ucsf.cgl.ChimeraX"",""share_with_app_devs"":0,""is_first_party"":0,""bug_type"":""309"",""os_version"":""macOS 12.6 (21G115)"",""incident_id"":""62927451-A5D9-4687-BCED-525241D4B89F"",""name"":""ChimeraX""} { ""uptime"" : 5500, ""procLaunch"" : ""2022-09-19 13:34:38.8224 +0800"", ""procRole"" : ""Foreground"", ""version"" : 2, ""userID"" : 501, ""deployVersion"" : 210, ""modelCode"" : ""Mac14,7"", ""procStartAbsTime"" : 132893978242, ""coalitionID"" : 2903, ""osVersion"" : { ""train"" : ""macOS 12.6"", ""build"" : ""21G115"", ""releaseType"" : ""User"" }, ""captureTime"" : ""2022-09-19 13:35:38.4018 +0800"", ""incident"" : ""62927451-A5D9-4687-BCED-525241D4B89F"", ""bug_type"" : ""309"", ""pid"" : 10303, ""procExitAbsTime"" : 134323405914, ""translated"" : false, ""cpuType"" : ""ARM-64"", ""procName"" : ""ChimeraX"", ""procPath"" : ""\/private\/var\/folders\/*\/ChimeraX_techpreview.app\/Contents\/MacOS\/ChimeraX"", ""bundleInfo"" : {""CFBundleShortVersionString"":""1.5.0"",""CFBundleVersion"":""1.5.0.0"",""CFBundleIdentifier"":""edu.ucsf.cgl.ChimeraX""}, ""storeInfo"" : {""deviceIdentifierForVendor"":""3897993C-E526-5C4D-B94B-9699391E79D5"",""thirdParty"":true}, ""parentProc"" : ""launchd"", ""parentPid"" : 1, ""coalitionName"" : ""edu.ucsf.cgl.ChimeraX"", ""crashReporterKey"" : ""AB28EFDE-2A8E-E4EC-B247-610ACEC910F8"", ""wakeTime"" : 130, ""sleepWakeUUID"" : ""14AFFF11-EC7C-4EAB-8B95-C9F7E0BE169E"", ""sip"" : ""enabled"", ""vmRegionInfo"" : ""0x18 is not in any region. Bytes before following region: 105553518919656\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n MALLOC_NANO (reserved) 600018000000-600020000000 [128.0M] rw-\/rwx SM=NUL ...(unallocated)"", ""isCorpse"" : 1, ""exception"" : {""codes"":""0x0000000000000001, 0x0000000000000018"",""rawCodes"":[1,24],""type"":""EXC_BAD_ACCESS"",""signal"":""SIGSEGV"",""subtype"":""KERN_INVALID_ADDRESS at 0x0000000000000018""}, ""ktriageinfo"" : ""VM - pmap_enter failed with resource shortage\nVM - pmap_enter failed with resource shortage\n"", ""vmregioninfo"" : ""0x18 is not in any region. Bytes before following region: 105553518919656\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n MALLOC_NANO (reserved) 600018000000-600020000000 [128.0M] rw-\/rwx SM=NUL ...(unallocated)"", ""extMods"" : {""caller"":{""thread_create"":0,""thread_set_state"":0,""task_for_pid"":0},""system"":{""thread_create"":0,""thread_set_state"":0,""task_for_pid"":0},""targeted"":{""thread_create"":0,""thread_set_state"":0,""task_for_pid"":0},""warnings"":0}, ""faultingThread"" : 0, ""threads"" : 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All rights reserved. How to cite UCSF ChimeraX ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.5.dev202209180803 (2022-09-18) © 2016-2022 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 76.3 OpenGL renderer: Apple M2 OpenGL vendor: Apple Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.3.1, Qt 6.3.1 Qt runtime version: 6.3.1 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: Mac14,7 Chip: Apple M2 Total Number of Cores: 8 (4 performance and 4 efficiency) Memory: 8 GB System Firmware Version: 7459.141.1 OS Loader Version: 7459.141.1 Software: System Software Overview: System Version: macOS 12.6 (21G115) Kernel Version: Darwin 21.6.0 Time since boot: 3:41 Graphics/Displays: Apple M2: Chipset Model: Apple M2 Type: GPU Bus: Built-In Total Number of Cores: 10 Vendor: Apple (0x106b) Metal Family: Supported, Metal GPUFamily Apple 7 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.0.8 Babel: 2.10.3 backcall: 0.2.0 blockdiag: 3.0.0 build: 0.8.0 certifi: 2021.10.8 cftime: 1.6.1 charset-normalizer: 2.1.1 ChimeraX-AddCharge: 1.4 ChimeraX-AddH: 2.2 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2.1 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.6 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.41.3 ChimeraX-AtomicLibrary: 7.0.3 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.7.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.1 ChimeraX-ChangeChains: 1.0 ChimeraX-CheckWaters: 1.2 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.2 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.2 ChimeraX-CommandLine: 1.2.4 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.5.dev202209180803 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.1 ChimeraX-DistMonitor: 1.3 ChimeraX-DockPrep: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.2 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.1.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.1 ChimeraX-MatchMaker: 2.0.7 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.8 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.5.6 ChimeraX-ModelPanel: 1.3.6 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.9.1 ChimeraX-PDB: 2.6.7 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.7.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.1.3 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.24.1 ChimeraX-uniprot: 2.2.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.1.3 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.1 ChimeraX-WebServices: 1.1.0 ChimeraX-Zone: 1.0.1 colorama: 0.4.5 cxservices: 1.2 cycler: 0.11.0 Cython: 0.29.32 debugpy: 1.6.3 decorator: 5.1.1 docutils: 0.19 entrypoints: 0.4 executing: 1.0.0 filelock: 3.7.1 fonttools: 4.37.2 funcparserlib: 1.0.0 grako: 3.16.5 h5py: 3.7.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.33 imagecodecs: 2022.2.22 imagesize: 1.4.1 importlib-metadata: 4.12.0 ipykernel: 6.15.1 ipython: 8.4.0 ipython-genutils: 0.2.0 jedi: 0.18.1 Jinja2: 3.1.2 jupyter-client: 7.3.4 jupyter-core: 4.11.1 kiwisolver: 1.4.4 line-profiler: 3.5.1 lxml: 4.9.1 lz4: 4.0.2 MarkupSafe: 2.1.1 matplotlib: 3.5.2 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.5 netCDF4: 1.6.0 networkx: 2.8.5 numexpr: 2.8.3 numpy: 1.23.1 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.2.0 pip: 22.2.2 pkginfo: 1.8.3 prompt-toolkit: 3.0.31 psutil: 5.9.1 ptyprocess: 0.7.0 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.12.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 PyQt6-commercial: 6.3.1 PyQt6-Qt6: 6.3.1 PyQt6-sip: 13.4.0 PyQt6-WebEngine-commercial: 6.3.1 PyQt6-WebEngine-Qt6: 6.3.1 python-dateutil: 2.8.2 pytz: 2022.2.1 pyzmq: 24.0.0 qtconsole: 5.3.1 QtPy: 2.2.0 RandomWords: 0.4.0 requests: 2.28.1 scipy: 1.9.0 setuptools: 65.1.1 sfftk-rw: 0.7.2 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 5.1.1 sphinx-autodoc-typehints: 1.19.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.5.0 tables: 3.7.0 tifffile: 2022.7.31 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.2 traitlets: 5.3.0 urllib3: 1.26.12 wcwidth: 0.2.5 webcolors: 1.12 wheel: 0.37.1 wheel-filename: 1.4.1 zipp: 3.8.1 }}} " defect feedback normal Window Toolkit Tom Goddard all ChimeraX