id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
7574	Choose next tool for Phenix ChimeraX user interface	Tom Goddard	Eric Pettersen	"What will be the next ChimeraX Phenix user interface after the ""douse"" tool is finished?  Dorothee suggested 5 ideas below.

Probably Tristan has the most insight into what will be most valuable for people building structures.

Begin forwarded message:

From: Dorothee Liebschner <dcliebschner@lbl.gov>
Subject: Re: R24 Monthly
Date: September 8, 2022 at 7:05:00 AM PDT

Hi everyone,

Below is a list of possible candidates for integration into ChimeraX. We can discuss the tools at the R24 meeting. I added the links to the documentation if you want to have a look.

- loop fitting (https://phenix-online.org/documentation/reference/fit_loops.html): build a loop into density to connect existing chain ends.
- dock-in-map (https://phenix-online.org/documentation/reference/dock_in_map.html): automatically dock a model or models into a map.
- Randy's new EMPlacement method (we talked about this at the last meeting)
- map-symmetry (https://phenix-online.org/documentation/reference/map_symmetry.html): identify the symmetry in a map and create a file with the symmetry operations.
- comprehensive validation (https://phenix-online.org/documentation/reference/validation.html): validate a model (clashes, rotamers, Rama angles, outliers, etc).
- phenix.match_maps (superposes maps or mtz files)

Best wishes,

Dorothee"	task	closed	moderate		Structure Editing		fixed		Tristan Croll				all	ChimeraX