id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 7503 Mismatch between Cocoa and Carbon for virtual key chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-12.4-arm64-arm-64bit ChimeraX Version: 1.5.dev202208130111 (2022-08-13 01:11:18 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. 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unallocated=2.2G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 128K 1 \nActivity Tracing 256K 1 \nCG backing stores 2176K 4 \nCG image 272K 12 \nColorSync 544K 27 \nCoreAnimation 176K 9 \nCoreGraphics 32K 2 \nCoreUI image data 3472K 22 \nFoundation 48K 2 \nKernel Alloc Once 32K 1 \nMALLOC 484.3M 89 \nMALLOC guard page 192K 10 \nMALLOC_MEDIUM (reserved) 904.0M 8 reserved VM address space (unallocated)\nMALLOC_NANO (reserved) 256.0M 1 reserved VM address space (unallocated)\nMach message 64K 4 \nOpenGL GLSL 384K 4 \nSTACK GUARD 688K 43 \nStack 336.0M 44 \nStack Guard 56.0M 1 \nVM_ALLOCATE 186.4M 308 \nVM_ALLOCATE (reserved) 128.0M 1 reserved VM address space (unallocated)\n__AUTH 2616K 309 \n__AUTH_CONST 20.6M 508 \n__CTF 756 1 \n__DATA 23.0M 632 \n__DATA_CONST 27.2M 641 \n__DATA_DIRTY 1805K 216 \n__FONT_DATA 4K 1 \n__GLSLBUILTINS 5176K 1 \n__LINKEDIT 604.4M 132 \n__OBJC_CONST 3657K 280 \n__OBJC_RO 83.0M 1 \n__OBJC_RW 3152K 1 \n__TEXT 716.8M 659 \n__UNICODE 592K 1 \ndyld private memory 1184K 3 \nmapped file 189.0M 49 \nshared memory 3168K 24 \n=========== ======= ======= \nTOTAL 3.9G 4053 \nTOTAL, minus reserved VM space 2.7G 4053 \n"", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""61af99aeda72d16a4beb7756"", ""factorPackIds"" : { ""SIRI_DIALOG_ASSETS"" : ""62e81c317613a1631383416b"" }, ""deploymentId"" : 240000315 }, { ""rolloutId"" : ""5fc94383418129005b4e9ae0"", ""factorPackIds"" : { }, ""deploymentId"" : 240000441 } ], ""experiments"" : [ ] } } ===== Log before crash start ===== UCSF ChimeraX version: 1.5.dev202208130111 (2022-08-13) © 2016-2022 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open > ""/Users/tianyanan/Library/Containers/com.tencent.xinWeChat/Data/Library/Application > Support/com.tencent.xinWeChat/2.0b4.0.9/17b2818d51f71ada299582dfc49d6771/Message/MessageTemp/7eb8ed752cf58056c4046d90c6a1e6a8/OpenData/7hsc.pdb"" 7hsc.pdb title: High resolution solution structure of the heat shock cognate-70 KD substrate binding domain obtained by multidimensional NMR techniques [more info...] Chain information for 7hsc.pdb #1 --- Chain | Description | UniProt A | heat shock cognate 70 KD protein 1 | HSP7C_RAT Mismatch between Cocoa '\x0' and Carbon 'c' for virtual key 8 with QFlags(NoModifier) Mismatch between Cocoa '\x0' and Carbon 'C' for virtual key 8 with QFlags(ShiftModifier) Mismatch between Cocoa '\x0' and Carbon 'c' for virtual key 8 with QFlags(ControlModifier) Mismatch between Cocoa '\x0' and Carbon 'C' for virtual key 8 with QFlags(ShiftModifier|ControlModifier) Mismatch between Cocoa '\x0' and Carbon '\u00e7' for virtual key 8 with QFlags(AltModifier) Mismatch between Cocoa '\x0' and Carbon '\u00c7' for virtual key 8 with QFlags(ShiftModifier|AltModifier) Mismatch between Cocoa '\x0' and Carbon '\u00e7' for virtual key 8 with QFlags(ControlModifier|AltModifier) Mismatch between Cocoa '\x0' and Carbon '\u00c7' for virtual key 8 with QFlags(ShiftModifier|ControlModifier|AltModifier) Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with QFlags(MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with QFlags(ShiftModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with QFlags(ControlModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with QFlags(ShiftModifier|ControlModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with QFlags(AltModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with QFlags(ShiftModifier|AltModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with QFlags(ControlModifier|AltModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier) > open > ""/Users/tianyanan/Library/Containers/com.tencent.xinWeChat/Data/Library/Application > Support/com.tencent.xinWeChat/2.0b4.0.9/17b2818d51f71ada299582dfc49d6771/Message/MessageTemp/7eb8ed752cf58056c4046d90c6a1e6a8/File/luteolin_ifd.pdb"" luteolin_ifd.pdb title: High resolution solution structure of the heat shock cognate-70 KD substrate binding domain obtained by multidimensional NMR techniques [more info...] Chain information for luteolin_ifd.pdb #2 --- Chain | Description A | No description available > open > ""/Users/tianyanan/Library/Containers/com.tencent.xinWeChat/Data/Library/Application > Support/com.tencent.xinWeChat/2.0b4.0.9/17b2818d51f71ada299582dfc49d6771/Message/MessageTemp/7eb8ed752cf58056c4046d90c6a1e6a8/File/luteolin_ifd.pdb"" luteolin_ifd.pdb title: High resolution solution structure of the heat shock cognate-70 KD substrate binding domain obtained by multidimensional NMR techniques [more info...] Chain information for luteolin_ifd.pdb #3 --- Chain | Description A | No description available > open > ""/Users/tianyanan/Library/Containers/com.tencent.xinWeChat/Data/Library/Application > Support/com.tencent.xinWeChat/2.0b4.0.9/17b2818d51f71ada299582dfc49d6771/Message/MessageTemp/7eb8ed752cf58056c4046d90c6a1e6a8/File/norathyriol_ifd.pdb"" norathyriol_ifd.pdb title: High resolution solution structure of the heat shock cognate-70 KD substrate binding domain obtained by multidimensional NMR techniques [more info...] Chain information for norathyriol_ifd.pdb #4 --- Chain | Description A | No description available > hide #3 models > hide #2 models > hide #1 models > hide #4 models > show #3 models ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.5.dev202208130111 (2022-08-13) © 2016-2022 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open > ""/Users/tianyanan/Library/Containers/com.tencent.xinWeChat/Data/Library/Application > Support/com.tencent.xinWeChat/2.0b4.0.9/17b2818d51f71ada299582dfc49d6771/Message/MessageTemp/7eb8ed752cf58056c4046d90c6a1e6a8/File/luteolin_ifd.pdb"" luteolin_ifd.pdb title: High resolution solution structure of the heat shock cognate-70 KD substrate binding domain obtained by multidimensional NMR techniques [more info...] Chain information for luteolin_ifd.pdb #1 --- Chain | Description A | No description available OpenGL version: 4.1 Metal - 76.3 OpenGL renderer: Apple M1 OpenGL vendor: Apple Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.3.1, Qt 6.3.1 Qt runtime version: 6.3.1 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro17,1 Chip: Apple M1 Total Number of Cores: 8 (4 performance and 4 efficiency) Memory: 16 GB System Firmware Version: 7459.121.3 OS Loader Version: 7459.121.3 Software: System Software Overview: System Version: macOS 12.4 (21F79) Kernel Version: Darwin 21.5.0 Time since boot: 98 days 22:18 Graphics/Displays: Apple M1: Chipset Model: Apple M1 Type: GPU Bus: Built-In Total Number of Cores: 8 Vendor: Apple (0x106b) Metal Family: Supported, Metal GPUFamily Apple 7 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.0.8 Babel: 2.10.3 backcall: 0.2.0 blockdiag: 3.0.0 build: 0.8.0 certifi: 2021.10.8 cftime: 1.6.1 charset-normalizer: 2.1.0 ChimeraX-AddCharge: 1.2.4 ChimeraX-AddH: 2.1.11 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2.1 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.5.2 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.40 ChimeraX-AtomicLibrary: 7.0.2 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.2 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.7.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.2 ChimeraX-ChangeChains: 1.0 ChimeraX-CheckWaters: 1.1.1 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.1 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.2 ChimeraX-CommandLine: 1.2.4 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.5.dev202208130111 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.1 ChimeraX-DistMonitor: 1.2 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.2 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.3 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.5 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.1.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.1 ChimeraX-MatchMaker: 2.0.6 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.7 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.5.6 ChimeraX-ModelPanel: 1.3.6 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.9.1 ChimeraX-PDB: 2.6.7 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.7.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.9 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.0.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.1.2 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.21.5 ChimeraX-uniprot: 2.2.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.1.3 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.1 ChimeraX-WebServices: 1.1.0 ChimeraX-Zone: 1.0.1 colorama: 0.4.5 cxservices: 1.2 cycler: 0.11.0 Cython: 0.29.32 debugpy: 1.6.2 decorator: 5.1.1 docutils: 0.19 entrypoints: 0.4 executing: 0.10.0 filelock: 3.7.1 fonttools: 4.34.4 funcparserlib: 1.0.0 grako: 3.16.5 h5py: 3.7.0 html2text: 2020.1.16 idna: 3.3 ihm: 0.33 imagecodecs: 2022.2.22 imagesize: 1.4.1 importlib-metadata: 4.12.0 ipykernel: 6.15.1 ipython: 8.4.0 ipython-genutils: 0.2.0 jedi: 0.18.1 Jinja2: 3.1.2 jupyter-client: 7.3.4 jupyter-core: 4.11.1 kiwisolver: 1.4.4 line-profiler: 3.5.1 lxml: 4.9.1 lz4: 4.0.2 MarkupSafe: 2.1.1 matplotlib: 3.5.2 matplotlib-inline: 0.1.3 msgpack: 1.0.4 nest-asyncio: 1.5.5 netCDF4: 1.6.0 networkx: 2.8.5 numexpr: 2.8.3 numpy: 1.23.1 openvr: 1.16.802 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.2.0 pip: 22.2.1 pkginfo: 1.8.3 prompt-toolkit: 3.0.30 psutil: 5.9.1 ptyprocess: 0.7.0 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.12.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 PyQt6-commercial: 6.3.1 PyQt6-Qt6: 6.3.1 PyQt6-sip: 13.4.0 PyQt6-WebEngine-commercial: 6.3.1 PyQt6-WebEngine-Qt6: 6.3.1 python-dateutil: 2.8.2 pytz: 2022.2.1 pyzmq: 23.2.1 qtconsole: 5.3.1 QtPy: 2.2.0 RandomWords: 0.3.0 requests: 2.28.1 scipy: 1.9.0 setuptools: 63.3.0 sfftk-rw: 0.7.2 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 5.1.1 sphinx-autodoc-typehints: 1.19.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.4.0 tables: 3.7.0 tifffile: 2022.7.31 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.2 traitlets: 5.3.0 urllib3: 1.26.11 wcwidth: 0.2.5 webcolors: 1.12 wheel: 0.37.1 wheel-filename: 1.4.1 zipp: 3.8.1 }}} " defect closed normal Window Toolkit can't reproduce Tom Goddard all ChimeraX