id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 7453 Calling [C++: N10atomstruct5ChainE] _cpp_demotion failed islamnae@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-10.13.6-x86_64-i386-64bit ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Process: ChimeraX [24830] Path: /Applications/ChimeraX-1.3.app/Contents/MacOS/ChimeraX Identifier: ChimeraX Version: 1.3.0 (1.3.0.0) Code Type: X86-64 (Native) Parent Process: ??? [1] Responsible: ChimeraX [24830] User ID: 501 Date/Time: 2022-08-02 20:57:48.559 -0400 OS Version: Mac OS X 10.13.6 (17G14033) Report Version: 12 Anonymous UUID: F2F975E5-AF3E-9FDC-E8AE-97D604EED59C Sleep/Wake UUID: 030DBBEE-D2B4-48C8-9FE9-19FF91F5CEA7 Time Awake Since Boot: 1800000 seconds Time Since Wake: 16000 seconds System Integrity Protection: enabled Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread Exception Type: EXC_CRASH (SIGABRT) Exception Codes: 0x0000000000000000, 0x0000000000000000 Exception Note: EXC_CORPSE_NOTIFY Application Specific Information: abort() called terminating with uncaught exception of type std::runtime_error: Calling [C++: N10atomstruct5ChainE] _cpp_demotion failed. Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread 0 libsystem_kernel.dylib 0x00007fff59da1b66 __pthread_kill + 10 1 libsystem_pthread.dylib 0x00007fff59f6c080 pthread_kill + 333 2 libsystem_c.dylib 0x00007fff59caf6fe raise + 26 3 libsystem_platform.dylib 0x00007fff59f5ff5a _sigtramp + 26 4 ??? 000000000000000000 0 + 0 5 libsystem_c.dylib 0x00007fff59cfd1ae abort + 127 6 libc++abi.dylib 0x00007fff57bf4f8f abort_message + 245 7 libc++abi.dylib 0x00007fff57bf5113 default_terminate_handler() + 241 8 libobjc.A.dylib 0x00007fff59035eab _objc_terminate() + 105 9 libc++abi.dylib 0x00007fff57c107c9 std::__terminate(void (*)()) + 8 10 libc++abi.dylib 0x00007fff57c10843 std::terminate() + 51 11 libmolc.dylib 0x0000000127e7d95f atom_delete + 543 12 libffi.dylib 0x00007fff58594f64 ffi_call_unix64 + 76 13 libffi.dylib 0x00007fff5859577c ffi_call + 808 14 _ctypes.cpython-39-darwin.so 0x0000000109f38ead _ctypes_callproc + 1037 15 _ctypes.cpython-39-darwin.so 0x0000000109f32c36 PyCFuncPtr_call + 1206 16 org.python.python 0x0000000102b4a17d _PyObject_MakeTpCall + 365 17 org.python.python 0x0000000102c2261c call_function + 876 18 org.python.python 0x0000000102c1fb4b _PyEval_EvalFrameDefault + 25371 19 org.python.python 0x0000000102b4a948 function_code_fastcall + 104 20 org.python.python 0x0000000102c2258c call_function + 732 21 org.python.python 0x0000000102c1fa92 _PyEval_EvalFrameDefault + 25186 22 org.python.python 0x0000000102c23283 _PyEval_EvalCode + 2611 23 org.python.python 0x0000000102b4a8d1 _PyFunction_Vectorcall + 289 24 org.python.python 0x0000000102b4a572 PyVectorcall_Call + 162 25 org.python.python 0x0000000102c201c3 _PyEval_EvalFrameDefault + 27027 26 org.python.python 0x0000000102c23283 _PyEval_EvalCode + 2611 27 org.python.python 0x0000000102b4a8d1 _PyFunction_Vectorcall + 289 28 org.python.python 0x0000000102b4c98a method_vectorcall + 202 29 org.python.python 0x0000000102c2258c call_function + 732 30 org.python.python 0x0000000102c1fbe1 _PyEval_EvalFrameDefault + 25521 31 org.python.python 0x0000000102c23283 _PyEval_EvalCode + 2611 32 org.python.python 0x0000000102b4a8d1 _PyFunction_Vectorcall + 289 33 org.python.python 0x0000000102c2258c call_function + 732 34 org.python.python 0x0000000102c1fb4b _PyEval_EvalFrameDefault + 25371 35 org.python.python 0x0000000102c23283 _PyEval_EvalCode + 2611 36 org.python.python 0x0000000102b4a8d1 _PyFunction_Vectorcall + 289 37 QtCore.abi3.so 0x000000010cdaa99d PyQtSlot::call(_object*, _object*) const + 109 38 QtCore.abi3.so 0x000000010cdaa866 PyQtSlot::invoke(void**, _object*, void*, bool) const + 374 39 QtCore.abi3.so 0x000000010cdab455 PyQtSlotProxy::unislot(void**) + 85 40 QtCore.abi3.so 0x000000010cdab3ca PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58 41 QtCore 0x000000010d18ef6e void doActivate(QObject*, int, void**) + 1118 42 QtWidgets 0x000000010dc6d3c6 QAction::activate(QAction::ActionEvent) + 310 43 QtCore 0x000000010d186b9f QObject::event(QEvent*) + 943 44 QtWidgets.abi3.so 0x000000010d82b1df sipQAction::event(QEvent*) + 191 45 QtWidgets 0x000000010dc769ea QApplicationPrivate::notify_helper(QObject*, QEvent*) + 266 46 QtWidgets 0x000000010dc77e11 QApplication::notify(QObject*, QEvent*) + 497 47 QtWidgets.abi3.so 0x000000010d829db9 sipQApplication::notify(QObject*, QEvent*) + 233 48 QtCore 0x000000010d15ba34 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212 49 QtCore 0x000000010d15cd79 QCoreApplicationPrivate::sendPostedEvents(QObject*, int, QThreadData*) + 809 50 libqcocoa.dylib 0x000000011db8e259 QCocoaEventDispatcherPrivate::processPostedEvents() + 313 51 libqcocoa.dylib 0x000000011db8e9c8 QCocoaEventDispatcherPrivate::postedEventsSourceCallback(void*) + 40 52 com.apple.CoreFoundation 0x00007fff31d15691 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17 53 com.apple.CoreFoundation 0x00007fff31dcfc8c __CFRunLoopDoSource0 + 108 54 com.apple.CoreFoundation 0x00007fff31cf80f0 __CFRunLoopDoSources0 + 208 55 com.apple.CoreFoundation 0x00007fff31cf756d __CFRunLoopRun + 1293 56 com.apple.CoreFoundation 0x00007fff31cf6dd3 CFRunLoopRunSpecific + 483 57 com.apple.HIToolbox 0x00007fff30fe1d96 RunCurrentEventLoopInMode + 286 58 com.apple.HIToolbox 0x00007fff30fe1a0f ReceiveNextEventCommon + 366 59 com.apple.HIToolbox 0x00007fff30fe1884 _BlockUntilNextEventMatchingListInModeWithFilter + 64 60 com.apple.AppKit 0x00007fff2f28ea3b _DPSNextEvent + 2085 61 com.apple.AppKit 0x00007fff2fa24e34 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 3044 62 com.apple.AppKit 0x00007fff2f28384d -[NSApplication run] + 764 63 libqcocoa.dylib 0x000000011db8d62f QCocoaEventDispatcher::processEvents(QFlags) + 2495 64 QtCore 0x000000010d157acf QEventLoop::exec(QFlags) + 431 65 QtCore 0x000000010d15c042 QCoreApplication::exec() + 130 66 QtWidgets.abi3.so 0x000000010d91b702 meth_QApplication_exec_(_object*, _object*) + 82 67 org.python.python 0x0000000102b8906d cfunction_call + 125 68 org.python.python 0x0000000102b4a17d _PyObject_MakeTpCall + 365 69 org.python.python 0x0000000102c2261c call_function + 876 70 org.python.python 0x0000000102c1fab3 _PyEval_EvalFrameDefault + 25219 71 org.python.python 0x0000000102b4a948 function_code_fastcall + 104 72 org.python.python 0x0000000102b4c98a method_vectorcall + 202 73 org.python.python 0x0000000102c2258c call_function + 732 74 org.python.python 0x0000000102c1fab3 _PyEval_EvalFrameDefault + 25219 75 org.python.python 0x0000000102c23283 _PyEval_EvalCode + 2611 76 org.python.python 0x0000000102b4a8d1 _PyFunction_Vectorcall + 289 77 org.python.python 0x0000000102c2258c call_function + 732 78 org.python.python 0x0000000102c1fb4b _PyEval_EvalFrameDefault + 25371 79 org.python.python 0x0000000102c23283 _PyEval_EvalCode + 2611 80 org.python.python 0x0000000102c1970b PyEval_EvalCode + 139 81 org.python.python 0x0000000102c16592 builtin_exec + 626 82 org.python.python 0x0000000102b8886a cfunction_vectorcall_FASTCALL + 218 83 org.python.python 0x0000000102c2258c call_function + 732 84 org.python.python 0x0000000102c1fb4b _PyEval_EvalFrameDefault + 25371 85 org.python.python 0x0000000102c23283 _PyEval_EvalCode + 2611 86 org.python.python 0x0000000102b4a8d1 _PyFunction_Vectorcall + 289 87 org.python.python 0x0000000102c2258c call_function + 732 88 org.python.python 0x0000000102c1fb4b _PyEval_EvalFrameDefault + 25371 89 org.python.python 0x0000000102c23283 _PyEval_EvalCode + 2611 90 org.python.python 0x0000000102b4a8d1 _PyFunction_Vectorcall + 289 91 org.python.python 0x0000000102c88e20 pymain_run_module + 208 92 org.python.python 0x0000000102c88537 Py_RunMain + 1431 93 org.python.python 0x0000000102c88b3f pymain_main + 223 94 org.python.python 0x0000000102c88a4b Py_Main + 43 95 edu.ucsf.cgl.ChimeraX 0x0000000102b03dc8 main + 120 96 libdyld.dylib 0x00007fff59c51015 start + 1 Thread 1: 0 libsystem_kernel.dylib 0x00007fff59da1a16 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff59f6a589 _pthread_cond_wait + 732 2 libopenblas.0.dylib 0x00000001042f8a9f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff59f69661 _pthread_body + 340 4 libsystem_pthread.dylib 0x00007fff59f6950d _pthread_start + 377 5 libsystem_pthread.dylib 0x00007fff59f68bf9 thread_start + 13 Thread 2: 0 libsystem_kernel.dylib 0x00007fff59da1a16 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff59f6a589 _pthread_cond_wait + 732 2 libopenblas.0.dylib 0x00000001212342eb blas_thread_server + 619 3 libsystem_pthread.dylib 0x00007fff59f69661 _pthread_body + 340 4 libsystem_pthread.dylib 0x00007fff59f6950d _pthread_start + 377 5 libsystem_pthread.dylib 0x00007fff59f68bf9 thread_start + 13 Thread 3:: ThreadPoolServiceThread 0 libsystem_kernel.dylib 0x00007fff59da2c02 kevent64 + 10 1 QtWebEngineCore 0x0000000111975e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330 2 QtWebEngineCore 0x0000000111975cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167 3 QtWebEngineCore 0x00000001118fe62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 4 QtWebEngineCore 0x00000001118c27cb base::RunLoop::Run() + 395 5 QtWebEngineCore 0x0000000111909a94 base::internal::ServiceThread::Run(base::RunLoop*) + 20 6 QtWebEngineCore 0x000000011191da7d base::Thread::ThreadMain() + 413 7 QtWebEngineCore 0x0000000111966e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff59f69661 _pthread_body + 340 9 libsystem_pthread.dylib 0x00007fff59f6950d _pthread_start + 377 10 libsystem_pthread.dylib 0x00007fff59f68bf9 thread_start + 13 Thread 4:: ThreadPoolBackgroundWorker 0 libsystem_kernel.dylib 0x00007fff59d981fa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff59d97714 mach_msg + 60 2 QtWebEngineCore 0x000000011196b492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x0000000111913778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56 4 QtWebEngineCore 0x0000000111914150 base::internal::WorkerThread::RunWorker() + 1024 5 QtWebEngineCore 0x0000000111913c44 base::internal::WorkerThread::RunBackgroundPooledWorker() + 20 6 QtWebEngineCore 0x0000000111966e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 7 libsystem_pthread.dylib 0x00007fff59f69661 _pthread_body + 340 8 libsystem_pthread.dylib 0x00007fff59f6950d _pthread_start + 377 9 libsystem_pthread.dylib 0x00007fff59f68bf9 thread_start + 13 Thread 5:: Chrome_IOThread 0 libsystem_kernel.dylib 0x00007fff59da2c02 kevent64 + 10 1 QtWebEngineCore 0x0000000111975e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330 2 QtWebEngineCore 0x0000000111975cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167 3 QtWebEngineCore 0x00000001118fe62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 4 QtWebEngineCore 0x00000001118c27cb base::RunLoop::Run() + 395 5 QtWebEngineCore 0x0000000115842f06 content::BrowserProcessSubThread::IOThreadRun(base::RunLoop*) + 102 6 QtWebEngineCore 0x000000011191da7d base::Thread::ThreadMain() + 413 7 QtWebEngineCore 0x0000000111966e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff59f69661 _pthread_body + 340 9 libsystem_pthread.dylib 0x00007fff59f6950d _pthread_start + 377 10 libsystem_pthread.dylib 0x00007fff59f68bf9 thread_start + 13 Thread 6:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff59d981fa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff59d97714 mach_msg + 60 2 QtWebEngineCore 0x000000011196b492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000011196b2cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x00000001118931db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x00000001118fe62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x00000001118c27cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x000000011191da7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x0000000111966e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff59f69661 _pthread_body + 340 10 libsystem_pthread.dylib 0x00007fff59f6950d _pthread_start + 377 11 libsystem_pthread.dylib 0x00007fff59f68bf9 thread_start + 13 Thread 7:: CompositorTileWorker1 0 libsystem_kernel.dylib 0x00007fff59da1a16 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff59f6a589 _pthread_cond_wait + 732 2 QtWebEngineCore 0x0000000111962e18 base::ConditionVariable::Wait() + 104 3 QtWebEngineCore 0x0000000112c1a5f8 non-virtual thunk to cc::SingleThreadTaskGraphRunner::Run() + 56 4 QtWebEngineCore 0x0000000111966e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 5 libsystem_pthread.dylib 0x00007fff59f69661 _pthread_body + 340 6 libsystem_pthread.dylib 0x00007fff59f6950d _pthread_start + 377 7 libsystem_pthread.dylib 0x00007fff59f68bf9 thread_start + 13 Thread 8:: Chrome_InProcGpuThread 0 libsystem_kernel.dylib 0x00007fff59d981fa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff59d97714 mach_msg + 60 2 QtWebEngineCore 0x000000011196b492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000011189320f base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 223 4 QtWebEngineCore 0x00000001118fe62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 5 QtWebEngineCore 0x00000001118c27cb base::RunLoop::Run() + 395 6 QtWebEngineCore 0x000000011191da7d base::Thread::ThreadMain() + 413 7 QtWebEngineCore 0x0000000111966e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff59f69661 _pthread_body + 340 9 libsystem_pthread.dylib 0x00007fff59f6950d _pthread_start + 377 10 libsystem_pthread.dylib 0x00007fff59f68bf9 thread_start + 13 Thread 9:: Chrome_ChildIOThread 0 libsystem_kernel.dylib 0x00007fff59da2c02 kevent64 + 10 1 QtWebEngineCore 0x0000000111975e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330 2 QtWebEngineCore 0x0000000111975cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167 3 QtWebEngineCore 0x00000001118fe62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 4 QtWebEngineCore 0x00000001118c27cb base::RunLoop::Run() + 395 5 QtWebEngineCore 0x000000011191da7d base::Thread::ThreadMain() + 413 6 QtWebEngineCore 0x0000000111966e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 7 libsystem_pthread.dylib 0x00007fff59f69661 _pthread_body + 340 8 libsystem_pthread.dylib 0x00007fff59f6950d _pthread_start + 377 9 libsystem_pthread.dylib 0x00007fff59f68bf9 thread_start + 13 Thread 10:: VizCompositorThread 0 libsystem_kernel.dylib 0x00007fff59d981fa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff59d97714 mach_msg + 60 2 QtWebEngineCore 0x000000011196b492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000011196b2cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x00000001118931db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x00000001118fe62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x00000001118c27cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x000000011191da7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x0000000111966e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff59f69661 _pthread_body + 340 10 libsystem_pthread.dylib 0x00007fff59f6950d _pthread_start + 377 11 libsystem_pthread.dylib 0x00007fff59f68bf9 thread_start + 13 Thread 11:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff59d981fa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff59d97714 mach_msg + 60 2 QtWebEngineCore 0x000000011196b492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000011196b2cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x00000001118931db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x00000001118fe62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x00000001118c27cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x000000011191da7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x0000000111966e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff59f69661 _pthread_body + 340 10 libsystem_pthread.dylib 0x00007fff59f6950d _pthread_start + 377 11 libsystem_pthread.dylib 0x00007fff59f68bf9 thread_start + 13 Thread 12:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff59d981fa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff59d97714 mach_msg + 60 2 QtWebEngineCore 0x000000011196b492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000011196b2cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x00000001118931db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x00000001118fe62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x00000001118c27cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x000000011191da7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x0000000111966e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff59f69661 _pthread_body + 340 10 libsystem_pthread.dylib 0x00007fff59f6950d _pthread_start + 377 11 libsystem_pthread.dylib 0x00007fff59f68bf9 thread_start + 13 Thread 13:: ThreadPoolSingleThreadForegroundBlocking0 0 libsystem_kernel.dylib 0x00007fff59d981fa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff59d97714 mach_msg + 60 2 QtWebEngineCore 0x000000011196b492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000011196b2cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x000000011191376a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42 5 QtWebEngineCore 0x0000000111914150 base::internal::WorkerThread::RunWorker() + 1024 6 QtWebEngineCore 0x0000000111913d34 base::internal::WorkerThread::RunDedicatedWorker() + 20 7 QtWebEngineCore 0x0000000111966e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff59f69661 _pthread_body + 340 9 libsystem_pthread.dylib 0x00007fff59f6950d _pthread_start + 377 10 libsystem_pthread.dylib 0x00007fff59f68bf9 thread_start + 13 Thread 14:: MemoryInfra 0 libsystem_kernel.dylib 0x00007fff59d981fa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff59d97714 mach_msg + 60 2 QtWebEngineCore 0x000000011196b492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000011196b2cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x00000001118931db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x00000001118fe62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x00000001118c27cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x000000011191da7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x0000000111966e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff59f69661 _pthread_body + 340 10 libsystem_pthread.dylib 0x00007fff59f6950d _pthread_start + 377 11 libsystem_pthread.dylib 0x00007fff59f68bf9 thread_start + 13 Thread 15:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff59d981fa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff59d97714 mach_msg + 60 2 QtWebEngineCore 0x000000011196b492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000011196b2cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x00000001118931db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x00000001118fe62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x00000001118c27cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x000000011191da7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x0000000111966e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff59f69661 _pthread_body + 340 10 libsystem_pthread.dylib 0x00007fff59f6950d _pthread_start + 377 11 libsystem_pthread.dylib 0x00007fff59f68bf9 thread_start + 13 Thread 16:: com.apple.NSEventThread 0 libsystem_kernel.dylib 0x00007fff59d981fa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff59d97714 mach_msg + 60 2 com.apple.CoreFoundation 0x00007fff31cf8405 __CFRunLoopServiceMachPort + 341 3 com.apple.CoreFoundation 0x00007fff31cf7757 __CFRunLoopRun + 1783 4 com.apple.CoreFoundation 0x00007fff31cf6dd3 CFRunLoopRunSpecific + 483 5 com.apple.AppKit 0x00007fff2f3cbfc4 _NSEventThread + 184 6 libsystem_pthread.dylib 0x00007fff59f69661 _pthread_body + 340 7 libsystem_pthread.dylib 0x00007fff59f6950d _pthread_start + 377 8 libsystem_pthread.dylib 0x00007fff59f68bf9 thread_start + 13 Thread 17:: ThreadPoolSingleThreadSharedBackgroundBlocking1 0 libsystem_kernel.dylib 0x00007fff59d981fa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff59d97714 mach_msg + 60 2 QtWebEngineCore 0x000000011196b492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000011196b2cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x000000011191376a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42 5 QtWebEngineCore 0x0000000111913e3d base::internal::WorkerThread::RunWorker() + 237 6 QtWebEngineCore 0x0000000111913c74 base::internal::WorkerThread::RunBackgroundSharedWorker() + 20 7 QtWebEngineCore 0x0000000111966e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff59f69661 _pthread_body + 340 9 libsystem_pthread.dylib 0x00007fff59f6950d _pthread_start + 377 10 libsystem_pthread.dylib 0x00007fff59f68bf9 thread_start + 13 Thread 18:: ThreadPoolForegroundWorker 0 libsystem_kernel.dylib 0x00007fff59d981fa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff59d97714 mach_msg + 60 2 QtWebEngineCore 0x000000011196b492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x0000000111913778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56 4 QtWebEngineCore 0x0000000111914150 base::internal::WorkerThread::RunWorker() + 1024 5 QtWebEngineCore 0x0000000111913cd4 base::internal::WorkerThread::RunPooledWorker() + 20 6 QtWebEngineCore 0x0000000111966e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 7 libsystem_pthread.dylib 0x00007fff59f69661 _pthread_body + 340 8 libsystem_pthread.dylib 0x00007fff59f6950d _pthread_start + 377 9 libsystem_pthread.dylib 0x00007fff59f68bf9 thread_start + 13 Thread 19:: ThreadPoolForegroundWorker 0 libsystem_kernel.dylib 0x00007fff59d981fa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff59d97714 mach_msg + 60 2 QtWebEngineCore 0x000000011196b492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x0000000111913778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56 4 QtWebEngineCore 0x0000000111914150 base::internal::WorkerThread::RunWorker() + 1024 5 QtWebEngineCore 0x0000000111913cd4 base::internal::WorkerThread::RunPooledWorker() + 20 6 QtWebEngineCore 0x0000000111966e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 7 libsystem_pthread.dylib 0x00007fff59f69661 _pthread_body + 340 8 libsystem_pthread.dylib 0x00007fff59f6950d _pthread_start + 377 9 libsystem_pthread.dylib 0x00007fff59f68bf9 thread_start + 13 Thread 20: 0 libsystem_pthread.dylib 0x00007fff59f68bdc start_wqthread + 0 1 com.apple.CoreFoundation 0x00007fff31d0c680 -[_CFXNotificationTokenRegistration isRegistered] + 32 Thread 21: 0 libsystem_pthread.dylib 0x00007fff59f68bdc start_wqthread + 0 1 ??? 0x4058504320000000 0 + 4636544065607827456 Thread 22: 0 libsystem_kernel.dylib 0x00007fff59da1a16 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff59f6a589 _pthread_cond_wait + 732 2 org.python.python 0x0000000102c78d6c PyThread_acquire_lock_timed + 700 3 org.python.python 0x0000000102cc7a1f acquire_timed + 111 4 org.python.python 0x0000000102cc7b30 lock_PyThread_acquire_lock + 48 5 org.python.python 0x0000000102b52e54 method_vectorcall_VARARGS_KEYWORDS + 388 6 org.python.python 0x0000000102c2258c call_function + 732 7 org.python.python 0x0000000102c1fa92 _PyEval_EvalFrameDefault + 25186 8 org.python.python 0x0000000102c23283 _PyEval_EvalCode + 2611 9 org.python.python 0x0000000102b4a8d1 _PyFunction_Vectorcall + 289 10 org.python.python 0x0000000102c2258c call_function + 732 11 org.python.python 0x0000000102c1fa92 _PyEval_EvalFrameDefault + 25186 12 org.python.python 0x0000000102c23283 _PyEval_EvalCode + 2611 13 org.python.python 0x0000000102b4a8d1 _PyFunction_Vectorcall + 289 14 org.python.python 0x0000000102c2258c call_function + 732 15 org.python.python 0x0000000102c1fa92 _PyEval_EvalFrameDefault + 25186 16 org.python.python 0x0000000102b4a948 function_code_fastcall + 104 17 org.python.python 0x0000000102c2258c call_function + 732 18 org.python.python 0x0000000102c1fa92 _PyEval_EvalFrameDefault + 25186 19 org.python.python 0x0000000102b4a948 function_code_fastcall + 104 20 org.python.python 0x0000000102c2258c call_function + 732 21 org.python.python 0x0000000102c1fa92 _PyEval_EvalFrameDefault + 25186 22 org.python.python 0x0000000102b4a948 function_code_fastcall + 104 23 org.python.python 0x0000000102b4c9d2 method_vectorcall + 274 24 org.python.python 0x0000000102cc73c6 t_bootstrap + 70 25 org.python.python 0x0000000102c788c9 pythread_wrapper + 25 26 libsystem_pthread.dylib 0x00007fff59f69661 _pthread_body + 340 27 libsystem_pthread.dylib 0x00007fff59f6950d _pthread_start + 377 28 libsystem_pthread.dylib 0x00007fff59f68bf9 thread_start + 13 Thread 23: 0 libsystem_pthread.dylib 0x00007fff59f68bdc start_wqthread + 0 1 ??? 0x4058504320000000 0 + 4636544065607827456 Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000000000000 rbx: 0x00007fff92684380 rcx: 0x0000000102feca48 rdx: 0x0000000000000000 rdi: 0x0000000000000307 rsi: 0x0000000000000006 rbp: 0x0000000102feca80 rsp: 0x0000000102feca48 r8: 0x0000000102fecf48 r9: 0x00007ffeed0f7a30 r10: 0x00007fff926843c8 r11: 0x0000000000000206 r12: 0x0000000000000307 r13: 0x0000000000000030 r14: 0x0000000000000006 r15: 0x000000000000002d rip: 0x00007fff59da1b66 rfl: 0x0000000000000206 cr2: 0x0000000103219190 Logical CPU: 0 Error Code: 0x02000148 Trap Number: 133 Binary Images: 0x102b03000 - 0x102b03ff3 +edu.ucsf.cgl.ChimeraX (1.3.0 - 1.3.0.0) /Applications/ChimeraX-1.3.app/Contents/MacOS/ChimeraX 0x102b0e000 - 0x102d72fff +org.python.python (3.9.6, [c] 2001-2019 Python Software Foundation. - 3.9.6) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/Python 0x1031b2000 - 0x1031b4fff +_heapq.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_heapq.cpython-39-darwin.so 0x1032fc000 - 0x103300ff7 +binascii.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/binascii.cpython-39-darwin.so 0x103353000 - 0x103358fff +zlib.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/zlib.cpython-39-darwin.so 0x1033a2000 - 0x1033a4fff +_bz2.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_bz2.cpython-39-darwin.so 0x1033ad000 - 0x1033defff +_lzma.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_lzma.cpython-39-darwin.so 0x1033ed000 - 0x1033eefff +grp.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/grp.cpython-39-darwin.so 0x1033f7000 - 0x1033fcff7 +_struct.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_struct.cpython-39-darwin.so 0x103409000 - 0x103411fff +math.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/math.cpython-39-darwin.so 0x10341d000 - 0x10341eff7 +_bisect.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_bisect.cpython-39-darwin.so 0x103426000 - 0x103427fff +_random.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_random.cpython-39-darwin.so 0x103430000 - 0x103434fff +_sha512.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_sha512.cpython-39-darwin.so 0x1034bd000 - 0x1034c2fff +_json.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_json.cpython-39-darwin.so 0x10360c000 - 0x1039c7fd7 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/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/core/_multiarray_tests.cpython-39-darwin.so 0x103f0f000 - 0x103f11fff +_posixsubprocess.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_posixsubprocess.cpython-39-darwin.so 0x103f22000 - 0x103f6cadf dyld (551.5) /usr/lib/dyld 0x103fc0000 - 0x107b726ef +libopenblas.0.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libopenblas.0.dylib 0x109e50000 - 0x109e54ff7 +select.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/select.cpython-39-darwin.so 0x109ef6000 - 0x109ef6ffb +_load_libs.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/pdb_lib/_load_libs.cpython-39-darwin.so 0x109f16000 - 0x109f1dfff +libqgif.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/Qt/plugins/imageformats/libqgif.dylib 0x109f2f000 - 0x109f40ff7 +_ctypes.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_ctypes.cpython-39-darwin.so 0x109f97000 - 0x109f9affb +lapack_lite.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/linalg/lapack_lite.cpython-39-darwin.so 0x109fa7000 - 0x109fc2ff3 +_umath_linalg.cpython-39-darwin.so (0) 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libcompiler_rt.dylib (62) /usr/lib/system/libcompiler_rt.dylib 0x7fff59aff000 - 0x7fff59b08ffb libcopyfile.dylib (146.50.5) /usr/lib/system/libcopyfile.dylib 0x7fff59b09000 - 0x7fff59b8effb libcorecrypto.dylib (562.70.3) /usr/lib/system/libcorecrypto.dylib 0x7fff59c16000 - 0x7fff59c4fff7 libdispatch.dylib (913.60.3) /usr/lib/system/libdispatch.dylib 0x7fff59c50000 - 0x7fff59c6dff7 libdyld.dylib (551.5) /usr/lib/system/libdyld.dylib 0x7fff59c6e000 - 0x7fff59c6effb libkeymgr.dylib (28) /usr/lib/system/libkeymgr.dylib 0x7fff59c6f000 - 0x7fff59c7bff3 libkxld.dylib (4570.71.82.6) /usr/lib/system/libkxld.dylib 0x7fff59c7c000 - 0x7fff59c7cff7 liblaunch.dylib (1205.70.16) /usr/lib/system/liblaunch.dylib 0x7fff59c7d000 - 0x7fff59c81ffb libmacho.dylib (906) /usr/lib/system/libmacho.dylib 0x7fff59c82000 - 0x7fff59c84fff libquarantine.dylib (86.70.1) /usr/lib/system/libquarantine.dylib 0x7fff59c85000 - 0x7fff59c86ff3 libremovefile.dylib (45) /usr/lib/system/libremovefile.dylib 0x7fff59c87000 - 0x7fff59c9efff libsystem_asl.dylib (356.70.1) /usr/lib/system/libsystem_asl.dylib 0x7fff59c9f000 - 0x7fff59c9ffff libsystem_blocks.dylib (67) /usr/lib/system/libsystem_blocks.dylib 0x7fff59ca0000 - 0x7fff59d29ff7 libsystem_c.dylib (1244.50.9) /usr/lib/system/libsystem_c.dylib 0x7fff59d2a000 - 0x7fff59d2dffb libsystem_configuration.dylib (963.50.9) /usr/lib/system/libsystem_configuration.dylib 0x7fff59d2e000 - 0x7fff59d31ffb libsystem_coreservices.dylib (51) /usr/lib/system/libsystem_coreservices.dylib 0x7fff59d32000 - 0x7fff59d33fff libsystem_darwin.dylib (1244.50.9) /usr/lib/system/libsystem_darwin.dylib 0x7fff59d34000 - 0x7fff59d3affb libsystem_dnssd.dylib (878.70.4) /usr/lib/system/libsystem_dnssd.dylib 0x7fff59d3b000 - 0x7fff59d84ff7 libsystem_info.dylib (517.30.1) /usr/lib/system/libsystem_info.dylib 0x7fff59d85000 - 0x7fff59dabff7 libsystem_kernel.dylib (4570.71.82.6) /usr/lib/system/libsystem_kernel.dylib 0x7fff59dac000 - 0x7fff59df7fcb libsystem_m.dylib (3147.50.1) /usr/lib/system/libsystem_m.dylib 0x7fff59df8000 - 0x7fff59e17ff7 libsystem_malloc.dylib (140.50.7) /usr/lib/system/libsystem_malloc.dylib 0x7fff59e18000 - 0x7fff59f48ff7 libsystem_network.dylib (1229.70.2) /usr/lib/system/libsystem_network.dylib 0x7fff59f49000 - 0x7fff59f53ffb libsystem_networkextension.dylib (767.70.2) /usr/lib/system/libsystem_networkextension.dylib 0x7fff59f54000 - 0x7fff59f5dff3 libsystem_notify.dylib (172) /usr/lib/system/libsystem_notify.dylib 0x7fff59f5e000 - 0x7fff59f65ff7 libsystem_platform.dylib (161.50.1) /usr/lib/system/libsystem_platform.dylib 0x7fff59f66000 - 0x7fff59f71fff libsystem_pthread.dylib (301.50.1) /usr/lib/system/libsystem_pthread.dylib 0x7fff59f72000 - 0x7fff59f75fff libsystem_sandbox.dylib (765.70.2) /usr/lib/system/libsystem_sandbox.dylib 0x7fff59f76000 - 0x7fff59f77ff3 libsystem_secinit.dylib (30) /usr/lib/system/libsystem_secinit.dylib 0x7fff59f78000 - 0x7fff59f7fff7 libsystem_symptoms.dylib (820.60.3) /usr/lib/system/libsystem_symptoms.dylib 0x7fff59f80000 - 0x7fff59f94ff7 libsystem_trace.dylib (829.70.2) /usr/lib/system/libsystem_trace.dylib 0x7fff59f96000 - 0x7fff59f9bff7 libunwind.dylib (35.3) /usr/lib/system/libunwind.dylib 0x7fff59f9c000 - 0x7fff59fc9fff libxpc.dylib (1205.70.16) /usr/lib/system/libxpc.dylib External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 18 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 1133029 thread_create: 0 thread_set_state: 0 VM Region Summary: ReadOnly portion of Libraries: Total=823.9M resident=0K(0%) swapped_out_or_unallocated=823.9M(100%) Writable regions: Total=1.0G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.0G(100%) VIRTUAL REGION REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Accelerate framework 384K 4 Activity Tracing 256K 2 CG backing stores 860K 6 CG image 420K 21 CoreAnimation 32K 8 CoreGraphics 8K 2 CoreImage 24K 7 CoreUI image data 2344K 26 CoreUI image file 180K 4 Foundation 4K 2 Kernel Alloc Once 8K 2 MALLOC 729.8M 457 MALLOC guard page 48K 11 MALLOC_LARGE (reserved) 384K 2 reserved VM address space (unallocated) Mach message 24K 4 Memory Tag 242 12K 2 OpenGL GLSL 384K 6 STACK GUARD 92K 24 Stack 155.2M 25 Stack Guard 56.0M 2 VM_ALLOCATE 136.6M 94 VM_ALLOCATE (reserved) 32.0M 2 reserved VM address space (unallocated) __DATA 44.6M 542 __FONT_DATA 4K 2 __GLSLBUILTINS 2588K 2 __LINKEDIT 297.5M 217 __TEXT 526.4M 504 __UNICODE 560K 2 mapped file 74.1M 127 shared memory 3148K 25 =========== ======= ======= TOTAL 2.0G 2104 TOTAL, minus reserved VM space 2.0G 2104 Log: UCSF ChimeraX version: 1.3 (2021-12-08) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX Deferring bundle installation OpenGL version: 4.1 INTEL-10.36.32 OpenGL renderer: Intel(R) HD Graphics 6000 OpenGL vendor: Intel Inc.Hardware: Hardware Overview: Model Name: MacBook Air Model Identifier: MacBookAir7,2 Processor Name: Intel Core i5 Processor Speed: 1.8 GHz Number of Processors: 1 Total Number of Cores: 2 L2 Cache (per Core): 256 KB L3 Cache: 3 MB Memory: 8 GB Boot ROM Version: 195.0.0.0.0 SMC Version (system): 2.27f2 Software: System Software Overview: System Version: macOS 10.13.6 (17G14033) Kernel Version: Darwin 17.7.0 Time since boot: 4 days 15:21 Graphics/Displays: Intel HD Graphics 6000: Chipset Model: Intel HD Graphics 6000 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x1626 Revision ID: 0x0009 Metal: Supported, feature set macOS GPUFamily1 v3 Displays: Color LCD: Display Type: LCD Resolution: 1440 x 900 (Widescreen eXtended Graphics Array Plus) UI Looks like: 1440 x 900 Framebuffer Depth: 24-Bit Color (ARGB8888) Main Display: Yes Mirror: Off Online: Yes Rotation: Supported Automatically Adjust Brightness: No Connection Type: DisplayPort Sceptre F24: Resolution: 1920 x 1080 (1080p FHD - Full High Definition) UI Looks like: 1920 x 1080 @ 60 Hz Framebuffer Depth: 24-Bit Color (ARGB8888) Display Serial Number: 1 Mirror: Off Online: Yes Rotation: Supported Automatically Adjust Brightness: No Locale: (None, 'UTF-8') PyQt5 5.15.2, Qt 5.15.2 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.2 Babel: 2.9.1 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2021.5.30 cftime: 1.5.1.1 charset-normalizer: 2.0.9 ChimeraX-AddCharge: 1.2.2 ChimeraX-AddH: 2.1.11 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.2.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.31 ChimeraX-AtomicLibrary: 4.2 ChimeraX-AtomSearch: 2.0 ChimeraX-AtomSearchLibrary: 1.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.0 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.6.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.2 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.2 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5 ChimeraX-CommandLine: 1.1.5 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.3 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1.5 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.1.2 ChimeraX-Help: 1.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0 ChimeraX-Label: 1.1 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.4 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 2.0.4 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.4 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.2.6 ChimeraX-ModelPanel: 1.2.1 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.2 ChimeraX-OpenCommand: 1.7 ChimeraX-PDB: 2.6.5 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.4.6 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.1 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.6.1 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1 ChimeraX-ToolshedUtils: 1.2 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.13.7 ChimeraX-uniprot: 2.2 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.0.1 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.4 cxservices: 1.1 cycler: 0.11.0 Cython: 0.29.24 decorator: 5.1.0 docutils: 0.17.1 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 3.6.0 html2text: 2020.1.16 idna: 3.3 ihm: 0.21 imagecodecs: 2021.4.28 imagesize: 1.3.0 ipykernel: 5.5.5 ipython: 7.23.1 ipython-genutils: 0.2.0 jedi: 0.18.0 Jinja2: 3.0.1 jupyter-client: 6.1.12 jupyter-core: 4.9.1 kiwisolver: 1.3.2 lxml: 4.6.3 lz4: 3.1.3 MarkupSafe: 2.0.1 matplotlib: 3.4.3 matplotlib-inline: 0.1.3 msgpack: 1.0.2 netCDF4: 1.5.7 networkx: 2.6.3 numexpr: 2.8.0 numpy: 1.21.2 openvr: 1.16.801 packaging: 21.0 ParmEd: 3.2.0 parso: 0.8.3 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 8.3.2 pip: 21.2.4 pkginfo: 1.7.1 prompt-toolkit: 3.0.23 psutil: 5.8.0 ptyprocess: 0.7.0 pycollada: 0.7.1 pydicom: 2.1.2 Pygments: 2.10.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.6 PyQt5-commercial: 5.15.2 PyQt5-sip: 12.8.1 PyQtWebEngine-commercial: 5.15.2 python-dateutil: 2.8.2 pytz: 2021.3 pyzmq: 22.3.0 qtconsole: 5.1.1 QtPy: 1.11.3 RandomWords: 0.3.0 requests: 2.26.0 scipy: 1.7.1 Send2Trash: 1.8.0 SEQCROW: 1.4.4 setuptools: 57.5.0 sfftk-rw: 0.7.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 4.2.0 sphinx-autodoc-typehints: 1.12.0 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-jurko: 0.6 tifffile: 2021.4.8 tinyarray: 1.2.3 tornado: 6.1 traitlets: 5.1.1 urllib3: 1.26.7 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.37.0 wheel-filename: 1.3.0 }}} " defect closed normal Core can't reproduce all ChimeraX