id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 7414 develop example bundles: missing bundle_api for bundle gabsbi@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: Linux-5.0.0-32-generic-x86_64-with-debian-buster-sid ChimeraX Version: 1.1 (2020-09-09 22:22:27 UTC) Description your helloworld and qtpy examples from the developers page install successfully but report 'missing bundle_api in bundle' when we try to run hello at the command line or click on the tutorial(Qt) button on the Tools/General menu created by the code. I tested this on several machines and it doesn't seem to be related to versions or dependencies Log: UCSF ChimeraX version: 1.1 (2020-09-09) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > devel build /home/microcarbon/Desktop/chimerax_hello/ running build running build_py package init file 'src/__init__.py' not found (or not a regular file) creating build creating build/lib creating build/lib/chimerax creating build/lib/chimerax/hello_world copying src/_init_.py -> build/lib/chimerax/hello_world copying src/cmd.py -> build/lib/chimerax/hello_world running bdist_wheel installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/chimerax creating build/bdist.linux-x86_64/wheel/chimerax/hello_world copying build/lib/chimerax/hello_world/_init_.py -> build/bdist.linux-x86_64/wheel/chimerax/hello_world copying build/lib/chimerax/hello_world/cmd.py -> build/bdist.linux-x86_64/wheel/chimerax/hello_world running install_egg_info running egg_info creating ChimeraX_HelloWorld.egg-info writing ChimeraX_HelloWorld.egg-info/PKG-INFO writing dependency_links to ChimeraX_HelloWorld.egg-info/dependency_links.txt writing requirements to ChimeraX_HelloWorld.egg-info/requires.txt writing top-level names to ChimeraX_HelloWorld.egg-info/top_level.txt writing manifest file 'ChimeraX_HelloWorld.egg-info/SOURCES.txt' reading manifest file 'ChimeraX_HelloWorld.egg-info/SOURCES.txt' writing manifest file 'ChimeraX_HelloWorld.egg-info/SOURCES.txt' Copying ChimeraX_HelloWorld.egg-info to build/bdist.linux-x86_64/wheel/ChimeraX_HelloWorld-0.1-py3.7.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/ChimeraX_HelloWorld-0.1.dist- info/WHEEL creating 'dist/ChimeraX_HelloWorld-0.1-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'chimerax/hello_world/_init_.py' adding 'chimerax/hello_world/cmd.py' adding 'ChimeraX_HelloWorld-0.1.dist-info/METADATA' adding 'ChimeraX_HelloWorld-0.1.dist-info/WHEEL' adding 'ChimeraX_HelloWorld-0.1.dist-info/top_level.txt' adding 'ChimeraX_HelloWorld-0.1.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Distribution is in /home/microcarbon/Desktop/chimerax_hello/dist/ChimeraX_HelloWorld-0.1-py3-none- any.whl > devel install /home/microcarbon/Desktop/chimerax_hello/ running build running build_py package init file 'src/__init__.py' not found (or not a regular file) running bdist_wheel installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/chimerax creating build/bdist.linux-x86_64/wheel/chimerax/hello_world copying build/lib/chimerax/hello_world/_init_.py -> build/bdist.linux-x86_64/wheel/chimerax/hello_world copying build/lib/chimerax/hello_world/cmd.py -> build/bdist.linux-x86_64/wheel/chimerax/hello_world running install_egg_info running egg_info writing ChimeraX_HelloWorld.egg-info/PKG-INFO writing dependency_links to ChimeraX_HelloWorld.egg-info/dependency_links.txt writing requirements to ChimeraX_HelloWorld.egg-info/requires.txt writing top-level names to ChimeraX_HelloWorld.egg-info/top_level.txt reading manifest file 'ChimeraX_HelloWorld.egg-info/SOURCES.txt' writing manifest file 'ChimeraX_HelloWorld.egg-info/SOURCES.txt' Copying ChimeraX_HelloWorld.egg-info to build/bdist.linux-x86_64/wheel/ChimeraX_HelloWorld-0.1-py3.7.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/ChimeraX_HelloWorld-0.1.dist- info/WHEEL creating 'dist/ChimeraX_HelloWorld-0.1-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'chimerax/hello_world/_init_.py' adding 'chimerax/hello_world/cmd.py' adding 'ChimeraX_HelloWorld-0.1.dist-info/METADATA' adding 'ChimeraX_HelloWorld-0.1.dist-info/WHEEL' adding 'ChimeraX_HelloWorld-0.1.dist-info/top_level.txt' adding 'ChimeraX_HelloWorld-0.1.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Distribution is in /home/microcarbon/Desktop/chimerax_hello/dist/ChimeraX_HelloWorld-0.1-py3-none- any.whl [toolshed install](help:user/commands/toolshed.html#install) /home/microcarbon/Desktop/chimerax_hello/dist/ChimeraX_HelloWorld-0.1-py3-none- any.whl reinstall true [toolshed install /home/microcarbon/Desktop/chimerax_hello/dist/ChimeraX_HelloWorld-0.1-py3-none- any.whl reinstall true](cxcmd:toolshed install /home/microcarbon/Desktop/chimerax_hello/dist/ChimeraX_HelloWorld-0.1-py3-none- any.whl reinstall true) Successfully installed ChimeraX-HelloWorld-0.1 Installed ChimeraX-HelloWorld (0.1) > devel build /home/microcarbon/Desktop/chimerax_qtpy/ running build running build_py package init file 'src/__init__.py' not found (or not a regular file) copying src/_init_.py -> build/lib/chimerax/tut_tool_qt running bdist_wheel installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/chimerax creating build/bdist.linux-x86_64/wheel/chimerax/tut_tool_qt copying build/lib/chimerax/tut_tool_qt/_init_.py -> build/bdist.linux-x86_64/wheel/chimerax/tut_tool_qt copying build/lib/chimerax/tut_tool_qt/tool.py -> build/bdist.linux-x86_64/wheel/chimerax/tut_tool_qt running install_egg_info running egg_info writing ChimeraX_TutorialToolQt.egg-info/PKG-INFO writing dependency_links to ChimeraX_TutorialToolQt.egg- info/dependency_links.txt writing requirements to ChimeraX_TutorialToolQt.egg-info/requires.txt writing top-level names to ChimeraX_TutorialToolQt.egg-info/top_level.txt reading manifest file 'ChimeraX_TutorialToolQt.egg-info/SOURCES.txt' writing manifest file 'ChimeraX_TutorialToolQt.egg-info/SOURCES.txt' Copying ChimeraX_TutorialToolQt.egg-info to build/bdist.linux-x86_64/wheel/ChimeraX_TutorialToolQt-0.1-py3.7.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/ChimeraX_TutorialToolQt-0.1.dist- info/WHEEL creating 'dist/ChimeraX_TutorialToolQt-0.1-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'chimerax/tut_tool_qt/_init_.py' adding 'chimerax/tut_tool_qt/tool.py' adding 'ChimeraX_TutorialToolQt-0.1.dist-info/METADATA' adding 'ChimeraX_TutorialToolQt-0.1.dist-info/WHEEL' adding 'ChimeraX_TutorialToolQt-0.1.dist-info/top_level.txt' adding 'ChimeraX_TutorialToolQt-0.1.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Distribution is in /home/microcarbon/Desktop/chimerax_qtpy/dist/ChimeraX_TutorialToolQt-0.1-py3-none- any.whl > devel install /home/microcarbon/Desktop/chimerax_qtpy/ running build running build_py package init file 'src/__init__.py' not found (or not a regular file) running bdist_wheel installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/chimerax creating build/bdist.linux-x86_64/wheel/chimerax/tut_tool_qt copying build/lib/chimerax/tut_tool_qt/_init_.py -> build/bdist.linux-x86_64/wheel/chimerax/tut_tool_qt copying build/lib/chimerax/tut_tool_qt/tool.py -> build/bdist.linux-x86_64/wheel/chimerax/tut_tool_qt running install_egg_info running egg_info writing ChimeraX_TutorialToolQt.egg-info/PKG-INFO writing dependency_links to ChimeraX_TutorialToolQt.egg- info/dependency_links.txt writing requirements to ChimeraX_TutorialToolQt.egg-info/requires.txt writing top-level names to ChimeraX_TutorialToolQt.egg-info/top_level.txt reading manifest file 'ChimeraX_TutorialToolQt.egg-info/SOURCES.txt' writing manifest file 'ChimeraX_TutorialToolQt.egg-info/SOURCES.txt' Copying ChimeraX_TutorialToolQt.egg-info to build/bdist.linux-x86_64/wheel/ChimeraX_TutorialToolQt-0.1-py3.7.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/ChimeraX_TutorialToolQt-0.1.dist- info/WHEEL creating 'dist/ChimeraX_TutorialToolQt-0.1-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'chimerax/tut_tool_qt/_init_.py' adding 'chimerax/tut_tool_qt/tool.py' adding 'ChimeraX_TutorialToolQt-0.1.dist-info/METADATA' adding 'ChimeraX_TutorialToolQt-0.1.dist-info/WHEEL' adding 'ChimeraX_TutorialToolQt-0.1.dist-info/top_level.txt' adding 'ChimeraX_TutorialToolQt-0.1.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Distribution is in /home/microcarbon/Desktop/chimerax_qtpy/dist/ChimeraX_TutorialToolQt-0.1-py3-none- any.whl [toolshed install](help:user/commands/toolshed.html#install) /home/microcarbon/Desktop/chimerax_qtpy/dist/ChimeraX_TutorialToolQt-0.1-py3-none- any.whl reinstall true [toolshed install /home/microcarbon/Desktop/chimerax_qtpy/dist/ChimeraX_TutorialToolQt-0.1-py3-none- any.whl reinstall true](cxcmd:toolshed install /home/microcarbon/Desktop/chimerax_qtpy/dist/ChimeraX_TutorialToolQt-0.1-py3-none- any.whl reinstall true) Successfully installed ChimeraX-TutorialToolQt-0.1 Installed ChimeraX-TutorialToolQt (0.1) > ui tool show ""Tutorial (Qt)"" Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/toolshed/info.py"", line 480, in _get_api bundle_api = getattr(m, 'bundle_api') AttributeError: module 'chimerax.tut_tool_qt' has no attribute 'bundle_api' During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/toolshed/info.py"", line 530, in start_tool api = self._get_api(session.logger) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/toolshed/info.py"", line 483, in _get_api raise ToolshedError(""missing bundle_api for bundle \""%s\"""" % self.name) chimerax.core.toolshed.ToolshedError: missing bundle_api for bundle ""ChimeraX- TutorialToolQt"" During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/gui.py"", line 1501, in run(ses, ""ui tool show %s"" % StringArg.unparse(tool_name))) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/commands/run.py"", line 31, in run results = command.run(text, log=log) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/commands/cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/ui/cmd.py"", line 187, in ui_tool_show bi.start_tool(session, name) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/toolshed/info.py"", line 537, in start_tool ""start_tool() failed for tool %s in bundle %s:\n%s"" % (tool_name, self.name, str(e))) chimerax.core.toolshed.ToolshedError: start_tool() failed for tool Tutorial (Qt) in bundle ChimeraX-TutorialToolQt: missing bundle_api for bundle ""ChimeraX-TutorialToolQt"" chimerax.core.toolshed.ToolshedError: start_tool() failed for tool Tutorial (Qt) in bundle ChimeraX-TutorialToolQt: missing bundle_api for bundle ""ChimeraX-TutorialToolQt"" File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/toolshed/info.py"", line 537, in start_tool ""start_tool() failed for tool %s in bundle %s:\n%s"" % (tool_name, self.name, str(e))) See log for complete Python traceback. Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/toolshed/info.py"", line 480, in _get_api bundle_api = getattr(m, 'bundle_api') AttributeError: module 'chimerax.hello_world' has no attribute 'bundle_api' During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/toolshed/info.py"", line 295, in _register_cmd api = self._get_api(logger) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/toolshed/info.py"", line 483, in _get_api raise ToolshedError(""missing bundle_api for bundle \""%s\"""" % self.name) chimerax.core.toolshed.ToolshedError: missing bundle_api for bundle ""ChimeraX- HelloWorld"" During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/commands/cli.py"", line 2140, in lazy_register deferred.call() File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/commands/cli.py"", line 2071, in call return self.proxy() File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/toolshed/info.py"", line 286, in cb s._register_cmd(ci, l) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/toolshed/info.py"", line 299, in _register_cmd ""register_command() failed for command %s in bundle %s:\n%s"" % (ci.name, self.name, str(e))) chimerax.core.toolshed.ToolshedError: register_command() failed for command hello in bundle ChimeraX-HelloWorld: missing bundle_api for bundle ""ChimeraX-HelloWorld"" During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/cmd_line/tool.py"", line 275, in execute cmd.run(cmd_text) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/commands/cli.py"", line 2746, in run self._find_command_name(final, used_aliases=_used_aliases) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/commands/cli.py"", line 2489, in _find_command_name what.lazy_register(cmd_name) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/commands/cli.py"", line 2142, in lazy_register raise RuntimeError(""delayed command registration for %r failed (%s)"" % (cmd_name, e)) RuntimeError: delayed command registration for 'hello' failed (register_command() failed for command hello in bundle ChimeraX-HelloWorld: missing bundle_api for bundle ""ChimeraX-HelloWorld"") RuntimeError: delayed command registration for 'hello' failed (register_command() failed for command hello in bundle ChimeraX-HelloWorld: missing bundle_api for bundle ""ChimeraX-HelloWorld"") File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/commands/cli.py"", line 2142, in lazy_register raise RuntimeError(""delayed command registration for %r failed (%s)"" % (cmd_name, e)) See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 390.141 OpenGL renderer: GeForce MX150/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Manufacturer: Acer Model: Aspire E5-576G OS: Linux Mint 19.3 tricia Architecture: 64bit ELF CPU: 8 Intel(R) Core(TM) i5-8250U CPU @ 1.60GHz Cache Size: 6144 KB Memory: total used free shared buff/cache available Mem: 7.7G 1.3G 2.7G 32M 3.6G 6.1G Swap: 2.0G 256K 2.0G Graphics: 00:02.0 VGA compatible controller [0300]: Intel Corporation UHD Graphics 620 [8086:5917] (rev 07) Subsystem: Acer Incorporated [ALI] UHD Graphics 620 [1025:121b] Kernel driver in use: i915 PyQt version: 5.12.3 Compiled Qt version: 5.12.4 Runtime Qt version: 5.12.9 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 Babel: 2.8.0 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2020.6.20 chardet: 3.0.4 ChimeraX-AddH: 2.1.3 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.1 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.6.1 ChimeraX-AtomSearch: 2.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 1.0.1 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.0 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.0 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.1 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.0 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-CommandLine: 1.1.3 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.1 ChimeraX-CoreFormats: 1.0 ChimeraX-coulombic: 1.0.1 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-DataFormats: 1.0 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.0 ChimeraX-Hbonds: 2.0 ChimeraX-HelloWorld: 0.1 ChimeraX-Help: 1.0 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.0 ChimeraX-ImageFormats: 1.0 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0 ChimeraX-Label: 1.0 ChimeraX-LinuxSupport: 1.0 ChimeraX-ListInfo: 1.0 ChimeraX-Log: 1.1.1 ChimeraX-LookingGlass: 1.1 ChimeraX-Map: 1.0.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.0 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 1.1 ChimeraX-MDcrds: 2.0 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.0 ChimeraX-mmCIF: 2.2 ChimeraX-MMTF: 2.0 ChimeraX-Modeller: 1.0 ChimeraX-ModelPanel: 1.0 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.0 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0 ChimeraX-OpenCommand: 1.2.1 ChimeraX-PDB: 2.1 ChimeraX-PDBBio: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0 ChimeraX-PubChem: 2.0 ChimeraX-Read-Pbonds: 1.0 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.0 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.2 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SeqView: 2.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.0 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.0 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.0.4 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.0 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.0 ChimeraX-ToolshedUtils: 1.0 ChimeraX-Tug: 1.0 ChimeraX-TutorialToolQt: 0.1 ChimeraX-UI: 1.2.3 ChimeraX-uniprot: 2.0 ChimeraX-ViewDockX: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.3 comtypes: 1.1.7 cxservices: 1.0 cycler: 0.10.0 Cython: 0.29.20 decorator: 4.4.2 distlib: 0.3.1 distro: 1.5.0 docutils: 0.16 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 2.10.0 html2text: 2020.1.16 idna: 2.10 ihm: 0.16 imagecodecs: 2020.5.30 imagecodecs-lite: 2020.1.31 imagesize: 1.2.0 ipykernel: 5.3.0 ipython: 7.15.0 ipython-genutils: 0.2.0 jedi: 0.17.2 Jinja2: 2.11.2 jupyter-client: 6.1.3 jupyter-core: 4.6.3 kiwisolver: 1.2.0 line-profiler: 2.1.2 lxml: 4.5.1 MarkupSafe: 1.1.1 matplotlib: 3.2.1 msgpack: 1.0.0 netifaces: 0.10.9 networkx: 2.4 numexpr: 2.7.1 numpy: 1.18.5 numpydoc: 1.0.0 openvr: 1.12.501 packaging: 20.4 parso: 0.7.1 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 7.1.2 pip: 20.2.2 pkginfo: 1.5.0.1 prompt-toolkit: 3.0.7 psutil: 5.7.0 ptyprocess: 0.6.0 pycollada: 0.7.1 pydicom: 2.0.0 Pygments: 2.6.1 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 2.4.7 PyQt5-commercial: 5.12.3 PyQt5-sip: 4.19.19 PyQtWebEngine-commercial: 5.12.1 python-dateutil: 2.8.1 pytz: 2020.1 pyzmq: 19.0.2 qtconsole: 4.7.4 QtPy: 1.9.0 RandomWords: 0.3.0 requests: 2.24.0 scipy: 1.4.1 setuptools: 49.4.0 sfftk-rw: 0.6.6.dev0 six: 1.15.0 snowballstemmer: 2.0.0 sortedcontainers: 2.2.2 Sphinx: 3.1.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 1.0.3 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.4 suds-jurko: 0.6 tables: 3.6.1 tifffile: 2020.6.3 tinyarray: 1.2.2 tornado: 6.0.4 traitlets: 5.0.4 urllib3: 1.25.10 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.34.2 }}} " defect closed normal Documentation not a bug all ChimeraX