id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
739	Opening files from shell command line opens them twice	Elaine Meng	Tom Goddard	"If I start ChimeraX from mac command line also specifying the input command file (struts.cxc attached) there is an error shown in the Log apparently from reading the pbond file that the script opens (5ego.pb also attached).  Subsequent commands in the script are not echoed but apparently they have been executed.  The error is that some atomspec in the pbond file is giving 2 atoms instead of one.  However, if I simply start up ChimeraX and then separately open struts.cxc there is no error.  It seems like there is some weird transient state upon startup where it thinks there are two copies of some atom even though there is only one.

I put it as minor since it might be something a user is unlikely to encounter."	defect	closed	minor	Alpha2	Input/Output		fixed		Tom Goddard Greg Couch				all	ChimeraX