id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 7343 Avoid pages of intimidating orange warning text on Toolshed install goddard@… Greg Couch "{{{ The following bug report has been submitted: Platform: macOS-10.16-x86_64-i386-64bit ChimeraX Version: 1.4 (2022-06-03 23:39:42 UTC) Description The Toolshed should install with minimal logged output unless it fails in which case detailed output would help. This ""Errors maybe have occurred..."" and the massive pip standard error and standard out logged in orange is very intimidating and almost all useless except for debugging. And in this case the install seemed to succeed. Log: UCSF ChimeraX version: 1.4 (2022-06-03) © 2016-2022 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > toolshed install /Users/goddard/Downloads/ChimeraX_ArtiaX-0.1-py3-none- > any.whl Errors may have occurred when running pip: pip standard error: \--- WARNING: Value for scheme.platlib does not match. Please report this to distutils: /Users/goddard/Library/Application Support/ChimeraX/1.4/site- packages sysconfig: /Users/goddard/Library/Python/3.9/lib/python/site-packages WARNING: Value for scheme.purelib does not match. Please report this to distutils: /Users/goddard/Library/Application Support/ChimeraX/1.4/site- packages sysconfig: /Users/goddard/Library/Python/3.9/lib/python/site-packages WARNING: Value for scheme.headers does not match. Please report this to distutils: /Users/goddard/Library/Application Support/ChimeraX/include/python3.9/pandas sysconfig: /Users/goddard/Library/Python/3.9/include/pandas WARNING: Value for scheme.scripts does not match. Please report this to distutils: /Users/goddard/Library/Application Support/ChimeraX/bin sysconfig: /Users/goddard/Library/Python/3.9/bin WARNING: Value for scheme.data does not match. Please report this to distutils: /Users/goddard/Library/Application Support/ChimeraX sysconfig: /Users/goddard/Library/Python/3.9 WARNING: Additional context: user = True home = None root = None prefix = None WARNING: Value for scheme.headers does not match. Please report this to distutils: /Users/goddard/Library/Application Support/ChimeraX/include/python3.9/superqt sysconfig: /Users/goddard/Library/Python/3.9/include/superqt WARNING: Value for scheme.headers does not match. Please report this to distutils: /Users/goddard/Library/Application Support/ChimeraX/include/python3.9/starfile sysconfig: /Users/goddard/Library/Python/3.9/include/starfile WARNING: Value for scheme.headers does not match. Please report this to distutils: /Users/goddard/Library/Application Support/ChimeraX/include/python3.9/ChimeraX-ArtiaX sysconfig: /Users/goddard/Library/Python/3.9/include/ChimeraX-ArtiaX WARNING: Value for scheme.headers does not match. Please report this to distutils: /Users/goddard/Library/Application Support/ChimeraX/include/python3.9/UNKNOWN sysconfig: /Users/goddard/Library/Python/3.9/include/UNKNOWN WARNING: You are using pip version 21.3.1; however, version 22.2.1 is available. You should consider upgrading via the '/Users/goddard/Desktop/ChimeraX-1.4.app/Contents/MacOS/ChimeraX -m pip install --upgrade pip' command. \--- pip standard output: \--- Looking in indexes: https://pypi.org/simple, https://cxtoolshed.rbvi.ucsf.edu/pypi/ Processing /Users/goddard/Downloads/ChimeraX_ArtiaX-0.1-py3-none-any.whl Requirement already satisfied: ChimeraX-SaveCommand>=1.5 in ./ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from ChimeraX-ArtiaX==0.1) (1.5.1) Collecting starfile Downloading starfile-0.4.11-py3-none-any.whl (27 kB) Requirement already satisfied: ChimeraX-Log>=1.1.4 in ./ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from ChimeraX-ArtiaX==0.1) (1.1.5) Requirement already satisfied: ChimeraX-MapData~=2.0 in ./ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from ChimeraX-ArtiaX==0.1) (2.0) Requirement already satisfied: ChimeraX-Map~=1.1 in ./ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from ChimeraX-ArtiaX==0.1) (1.1) Requirement already satisfied: ChimeraX-Markers~=1.0 in ./ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from ChimeraX-ArtiaX==0.1) (1.0) Requirement already satisfied: ChimeraX-ModelPanel>=1.2.1 in ./ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from ChimeraX-ArtiaX==0.1) (1.3.2) Collecting superqt Downloading superqt-0.3.3-py3-none-any.whl (59 kB) Requirement already satisfied: ChimeraX-Core>=1.3 in ./ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from ChimeraX-ArtiaX==0.1) (1.4) Requirement already satisfied: ChimeraX-UI>=1.0 in ./ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from ChimeraX-ArtiaX==0.1) (1.18.3) Requirement already satisfied: ChimeraX-Geometry>=1.1 in ./ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from ChimeraX-ArtiaX==0.1) (1.2) Requirement already satisfied: ChimeraX-BILD~=1.0 in ./ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from ChimeraX-ArtiaX==0.1) (1.0) Requirement already satisfied: ChimeraX-Graphics~=1.1 in ./ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from ChimeraX-ArtiaX==0.1) (1.1) Requirement already satisfied: ChimeraX-Atomic>=1.1 in ./ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from ChimeraX-ArtiaX==0.1) (1.39.1) Requirement already satisfied: ChimeraX-IMOD~=1.0 in ./ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from ChimeraX-ArtiaX==0.1) (1.0) Requirement already satisfied: ChimeraX-MouseModes~=1.1 in ./ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from ChimeraX-ArtiaX==0.1) (1.1) Requirement already satisfied: ChimeraX-OpenCommand>=1.7 in ./ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from ChimeraX-ArtiaX==0.1) (1.9) Requirement already satisfied: ChimeraX-ConnectStructure~=2.0 in ./ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from ChimeraX-Atomic>=1.1->ChimeraX-ArtiaX==0.1) (2.0.1) Requirement already satisfied: ChimeraX-Arrays~=1.0 in ./ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from ChimeraX-Atomic>=1.1->ChimeraX-ArtiaX==0.1) (1.0) Requirement already satisfied: ChimeraX-mmCIF~=2.0 in ./ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from ChimeraX-Atomic>=1.1->ChimeraX-ArtiaX==0.1) (2.7) Requirement already satisfied: ChimeraX-Nucleotides~=2.0 in ./ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from ChimeraX-Atomic>=1.1->ChimeraX-ArtiaX==0.1) (2.0.2) Requirement already satisfied: ChimeraX-PDB~=2.0 in ./ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from ChimeraX-Atomic>=1.1->ChimeraX-ArtiaX==0.1) (2.6.6) Requirement already satisfied: ChimeraX-PDBLibrary~=1.0 in ./ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from ChimeraX-Atomic>=1.1->ChimeraX-ArtiaX==0.1) (1.0.2) Requirement already satisfied: ChimeraX-AtomicLibrary~=7.0 in ./ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from ChimeraX-Atomic>=1.1->ChimeraX-ArtiaX==0.1) (7.0) Requirement already satisfied: ChimeraX-DataFormats~=1.0 in ./ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from ChimeraX-BILD~=1.0->ChimeraX-ArtiaX==0.1) (1.2.2) Requirement already satisfied: ChimeraX-Surface~=1.0 in ./ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from ChimeraX-BILD~=1.0->ChimeraX-ArtiaX==0.1) (1.0) Requirement already satisfied: ChimeraX-MapSeries~=2.0 in ./ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from ChimeraX-Map~=1.1->ChimeraX-ArtiaX==0.1) (2.1) Requirement already satisfied: ChimeraX-MapFilter~=2.0 in ./ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from ChimeraX-Map~=1.1->ChimeraX-ArtiaX==0.1) (2.0) Requirement already satisfied: ChimeraX-StdCommands>=1.3.1,~=1.3 in ./ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from ChimeraX-ModelPanel>=1.2.1->ChimeraX-ArtiaX==0.1) (1.8) Requirement already satisfied: ChimeraX-IO~=1.0 in ./ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from ChimeraX-OpenCommand>=1.7->ChimeraX-ArtiaX==0.1) (1.0.1) Requirement already satisfied: ChimeraX-SelInspector~=1.0 in ./ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from ChimeraX-UI>=1.0->ChimeraX-ArtiaX==0.1) (1.0) Collecting pandas Downloading pandas-1.4.3-cp39-cp39-macosx_10_9_x86_64.whl (11.5 MB) Requirement already satisfied: qtpy>=1.1.0 in ./ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from superqt->ChimeraX-ArtiaX==0.1) (2.1.0) Requirement already satisfied: typing-extensions>=3.10.0.0 in /Users/goddard/Library/Application Support/ChimeraX/1.4/site-packages (from superqt->ChimeraX-ArtiaX==0.1) (4.1.1) Requirement already satisfied: packaging in ./ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from superqt->ChimeraX-ArtiaX==0.1) (21.0) Requirement already satisfied: pygments>=2.4.0 in ./ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from superqt->ChimeraX-ArtiaX==0.1) (2.11.2) Requirement already satisfied: ChimeraX-MapFit~=2.0 in ./ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from ChimeraX-MapSeries~=2.0->ChimeraX-Map~=1.1->ChimeraX- ArtiaX==0.1) (2.0) Requirement already satisfied: ChimeraX-ItemsInspection~=1.0 in ./ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from ChimeraX-SelInspector~=1.0->ChimeraX-UI>=1.0->ChimeraX- ArtiaX==0.1) (1.0) Requirement already satisfied: ChimeraX-Dssp~=2.0 in ./ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from ChimeraX-StdCommands>=1.3.1,~=1.3->ChimeraX- ModelPanel>=1.2.1->ChimeraX-ArtiaX==0.1) (2.0) Requirement already satisfied: pyparsing>=2.0.2 in ./ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from packaging->superqt->ChimeraX-ArtiaX==0.1) (3.0.9) Requirement already satisfied: pytz>=2020.1 in ./ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from pandas->starfile->ChimeraX-ArtiaX==0.1) (2022.1) Requirement already satisfied: python-dateutil>=2.8.1 in ./ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from pandas->starfile->ChimeraX-ArtiaX==0.1) (2.8.2) Requirement already satisfied: numpy>=1.18.5 in /Users/goddard/Library/Application Support/ChimeraX/1.4/site-packages (from pandas->starfile->ChimeraX-ArtiaX==0.1) (1.20.3) Requirement already satisfied: six>=1.5 in ./ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages (from python-dateutil>=2.8.1->pandas->starfile->ChimeraX-ArtiaX==0.1) (1.16.0) Installing collected packages: pandas, superqt, starfile, ChimeraX-ArtiaX Successfully installed ChimeraX-ArtiaX-0.1 pandas-1.4.3 starfile-0.4.11 superqt-0.3.3 \--- Successfully installed ChimeraX-ArtiaX-0.1 pandas-1.4.3 starfile-0.4.11 superqt-0.3.3 Installed ChimeraX-ArtiaX (0.1) OpenGL version: 4.1 ATI-4.8.54 OpenGL renderer: AMD Radeon Pro 580 OpenGL Engine OpenGL vendor: ATI Technologies Inc. Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.3.0, Qt 6.3.0 Qt runtime version: 6.3.0 Qt platform: cocoa Hardware: Hardware Overview: Model Name: iMac Model Identifier: iMac18,3 Processor Name: Quad-Core Intel Core i7 Processor Speed: 4.2 GHz Number of Processors: 1 Total Number of Cores: 4 L2 Cache (per Core): 256 KB L3 Cache: 8 MB Hyper-Threading Technology: Enabled Memory: 32 GB System Firmware Version: 451.120.7.0.0 OS Loader Version: 540.120.3~6 SMC Version (system): 2.41f2 Software: System Software Overview: System Version: macOS 12.4 (21F79) Kernel Version: Darwin 21.5.0 Time since boot: 65 days 24 minutes Graphics/Displays: Radeon Pro 580: Chipset Model: Radeon Pro 580 Type: GPU Bus: PCIe PCIe Lane Width: x16 VRAM (Total): 8 GB Vendor: AMD (0x1002) Device ID: 0x67df Revision ID: 0x00c0 ROM Revision: 113-D000AA-931 VBIOS Version: 113-D0001A1X-025 EFI Driver Version: 01.00.931 Metal Family: Supported, Metal GPUFamily macOS 2 Displays: iMac: Display Type: Built-In Retina LCD Resolution: Retina 5K (5120 x 2880) Framebuffer Depth: 30-Bit Color (ARGB2101010) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.3 Babel: 2.10.1 backcall: 0.2.0 blockdiag: 3.0.0 certifi: 2021.10.8 cftime: 1.6.0 charset-normalizer: 2.0.12 ChimeraX-AddCharge: 1.2.3 ChimeraX-AddH: 2.1.11 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2.1 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.4.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-ArtiaX: 0.1 ChimeraX-Atomic: 1.39.1 ChimeraX-AtomicLibrary: 7.0 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.1 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.1 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.7 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.2 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.1 ChimeraX-CommandLine: 1.2.3 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.4 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.2.2 ChimeraX-DeepSSETracer: 0.1 ChimeraX-Dicom: 1.1 ChimeraX-DistMonitor: 1.1.5 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.2 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.1.2 ChimeraX-Help: 1.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0 ChimeraX-Label: 1.1.1 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 2.0.6 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.7 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.5.5 ChimeraX-ModelPanel: 1.3.2 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.2 ChimeraX-OpenCommand: 1.9 ChimeraX-PDB: 2.6.6 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.6 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.1 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.8 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.0.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.1 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.18.3 ChimeraX-uniprot: 2.2 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.1.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.1.0 ChimeraX-Zone: 1.0 colorama: 0.4.4 cxservices: 1.2 cycler: 0.11.0 Cython: 0.29.26 debugpy: 1.6.0 decorator: 5.1.1 docutils: 0.17.1 entrypoints: 0.4 filelock: 3.4.2 fonttools: 4.33.3 funcparserlib: 1.0.0 grako: 3.16.5 h5py: 3.7.0 html2text: 2020.1.16 idna: 3.3 ihm: 0.27 imagecodecs: 2021.11.20 imagesize: 1.3.0 importlib-metadata: 4.0.1 ipykernel: 6.6.1 ipython: 7.31.1 ipython-genutils: 0.2.0 jedi: 0.18.1 Jinja2: 3.0.3 jupyter-client: 7.1.0 jupyter-core: 4.10.0 kiwisolver: 1.4.2 line-profiler: 3.4.0 lxml: 4.7.1 lz4: 3.1.10 MarkupSafe: 2.1.1 matplotlib: 3.5.1 matplotlib-inline: 0.1.3 msgpack: 1.0.3 nest-asyncio: 1.5.5 netCDF4: 1.5.8 networkx: 2.6.3 numexpr: 2.8.1 numpy: 1.20.3 openvr: 1.16.802 packaging: 21.0 pandas: 1.4.3 ParmEd: 3.4.3 parso: 0.8.3 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.0.1 pip: 21.3.1 pkginfo: 1.8.2 prompt-toolkit: 3.0.29 psutil: 5.9.0 ptyprocess: 0.7.0 pycollada: 0.7.2 pydicom: 2.2.2 Pygments: 2.11.2 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 PyQt6-commercial: 6.3.0 PyQt6-Qt6: 6.3.0 PyQt6-sip: 13.3.1 PyQt6-WebEngine-commercial: 6.3.0 PyQt6-WebEngine-Qt6: 6.3.0 python-dateutil: 2.8.2 pytz: 2022.1 pyzmq: 23.1.0 qtconsole: 5.3.0 QtPy: 2.1.0 RandomWords: 0.3.0 requests: 2.27.1 scipy: 1.7.3 setuptools: 59.8.0 sfftk-rw: 0.7.2 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 4.3.2 sphinx-autodoc-typehints: 1.15.2 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 starfile: 0.4.11 suds-community: 1.0.0 superqt: 0.3.3 tables: 3.7.0 tifffile: 2021.11.2 tinyarray: 1.2.4 torch: 1.8.1 tornado: 6.1 traitlets: 5.1.1 typing-extensions: 4.1.1 urllib3: 1.26.9 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.37.1 wheel-filename: 1.3.0 zipp: 3.7.0 }}} " enhancement closed normal 1.5 Tool Shed fixed Zach Pearson all ChimeraX