id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 7297 glClear: invalid framebuffer operation chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-10.16-x86_64-i386-64bit ChimeraX Version: 1.4 (2022-06-03 23:39:42 UTC) Description using an EGPU, opening a session saved in catalina after updating to monterey. Log: UCSF ChimeraX version: 1.4 (2022-06-03) © 2016-2022 Regents of the University of California. All rights reserved. > open > /Users/Dawson/Workspace/SD/AF/2022-07-14_CCR2_CCl2_FDB_MM/AF2ou/CCR2_CCL2_multi/rank_25_mm.cxs Log from Mon Jul 18 11:51:41 2022 Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.4 (2022-06-03) © 2016-2022 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open > /Users/dawson/Workspace/SD/AF/2022-07-14_CCR2_CCl2_FDB_MM/AF2ou/CCR2_CCL2_multi/ranked_0.pdb > /Users/dawson/Workspace/SD/AF/2022-07-14_CCR2_CCl2_FDB_MM/AF2ou/CCR2_CCL2_multi/ranked_9.pdb > /Users/dawson/Workspace/SD/AF/2022-07-14_CCR2_CCl2_FDB_MM/AF2ou/CCR2_CCL2_multi/ranked_8.pdb > /Users/dawson/Workspace/SD/AF/2022-07-14_CCR2_CCl2_FDB_MM/AF2ou/CCR2_CCL2_multi/ranked_7.pdb > /Users/dawson/Workspace/SD/AF/2022-07-14_CCR2_CCl2_FDB_MM/AF2ou/CCR2_CCL2_multi/ranked_6.pdb > /Users/dawson/Workspace/SD/AF/2022-07-14_CCR2_CCl2_FDB_MM/AF2ou/CCR2_CCL2_multi/ranked_5.pdb > /Users/dawson/Workspace/SD/AF/2022-07-14_CCR2_CCl2_FDB_MM/AF2ou/CCR2_CCL2_multi/ranked_4.pdb > /Users/dawson/Workspace/SD/AF/2022-07-14_CCR2_CCl2_FDB_MM/AF2ou/CCR2_CCL2_multi/ranked_3.pdb > /Users/dawson/Workspace/SD/AF/2022-07-14_CCR2_CCl2_FDB_MM/AF2ou/CCR2_CCL2_multi/ranked_24.pdb > /Users/dawson/Workspace/SD/AF/2022-07-14_CCR2_CCl2_FDB_MM/AF2ou/CCR2_CCL2_multi/ranked_23.pdb > /Users/dawson/Workspace/SD/AF/2022-07-14_CCR2_CCl2_FDB_MM/AF2ou/CCR2_CCL2_multi/ranked_22.pdb > /Users/dawson/Workspace/SD/AF/2022-07-14_CCR2_CCl2_FDB_MM/AF2ou/CCR2_CCL2_multi/ranked_21.pdb > /Users/dawson/Workspace/SD/AF/2022-07-14_CCR2_CCl2_FDB_MM/AF2ou/CCR2_CCL2_multi/ranked_20.pdb > /Users/dawson/Workspace/SD/AF/2022-07-14_CCR2_CCl2_FDB_MM/AF2ou/CCR2_CCL2_multi/ranked_2.pdb > /Users/dawson/Workspace/SD/AF/2022-07-14_CCR2_CCl2_FDB_MM/AF2ou/CCR2_CCL2_multi/ranked_19.pdb > /Users/dawson/Workspace/SD/AF/2022-07-14_CCR2_CCl2_FDB_MM/AF2ou/CCR2_CCL2_multi/ranked_18.pdb > /Users/dawson/Workspace/SD/AF/2022-07-14_CCR2_CCl2_FDB_MM/AF2ou/CCR2_CCL2_multi/ranked_17.pdb > /Users/dawson/Workspace/SD/AF/2022-07-14_CCR2_CCl2_FDB_MM/AF2ou/CCR2_CCL2_multi/ranked_16.pdb > /Users/dawson/Workspace/SD/AF/2022-07-14_CCR2_CCl2_FDB_MM/AF2ou/CCR2_CCL2_multi/ranked_15.pdb > /Users/dawson/Workspace/SD/AF/2022-07-14_CCR2_CCl2_FDB_MM/AF2ou/CCR2_CCL2_multi/ranked_14.pdb > /Users/dawson/Workspace/SD/AF/2022-07-14_CCR2_CCl2_FDB_MM/AF2ou/CCR2_CCL2_multi/ranked_13.pdb > /Users/dawson/Workspace/SD/AF/2022-07-14_CCR2_CCl2_FDB_MM/AF2ou/CCR2_CCL2_multi/ranked_12.pdb > /Users/dawson/Workspace/SD/AF/2022-07-14_CCR2_CCl2_FDB_MM/AF2ou/CCR2_CCL2_multi/ranked_11.pdb > /Users/dawson/Workspace/SD/AF/2022-07-14_CCR2_CCl2_FDB_MM/AF2ou/CCR2_CCL2_multi/ranked_10.pdb > /Users/dawson/Workspace/SD/AF/2022-07-14_CCR2_CCl2_FDB_MM/AF2ou/CCR2_CCL2_multi/ranked_1.pdb Chain information for ranked_0.pdb #1 --- Chain | Description A | No description available B | No description available Chain information for ranked_9.pdb #2 --- Chain | Description A | No description available B | No description available Chain information for ranked_8.pdb #3 --- Chain | Description A | No description available B | No description available Chain information for ranked_7.pdb #4 --- Chain | Description A | No description available B | No description available Chain information for ranked_6.pdb #5 --- Chain | Description A | No description available B | No description available Chain information for ranked_5.pdb #6 --- Chain | Description A | No description available B | No description available Chain information for ranked_4.pdb #7 --- Chain | Description A | No description available B | No description available Chain information for ranked_3.pdb #8 --- Chain | Description A | No description available B | No description available Chain information for ranked_24.pdb #9 --- Chain | Description A | No description available B | No description available Chain information for ranked_23.pdb #10 --- Chain | Description A | No description available B | No description available Chain information for ranked_22.pdb #11 --- Chain | Description A | No description available B | No description available Chain information for ranked_21.pdb #12 --- Chain | Description A | No description available B | No description available Chain information for ranked_20.pdb #13 --- Chain | Description A | No description available B | No description available Chain information for ranked_2.pdb #14 --- Chain | Description A | No description available B | No description available Chain information for ranked_19.pdb #15 --- Chain | Description A | No description available B | No description available Chain information for ranked_18.pdb #16 --- Chain | Description A | No description available B | No description available Chain information for ranked_17.pdb #17 --- Chain | Description A | No description available B | No description available Chain information for ranked_16.pdb #18 --- Chain | Description A | No description available B | No description available Chain information for ranked_15.pdb #19 --- Chain | Description A | No description available B | No description available Chain information for ranked_14.pdb #20 --- Chain | Description A | No description available B | No description available Chain information for ranked_13.pdb #21 --- Chain | Description A | No description available B | No description available Chain information for ranked_12.pdb #22 --- Chain | Description A | No description available B | No description available Chain information for ranked_11.pdb #23 --- Chain | Description A | No description available B | No description available Chain information for ranked_10.pdb #24 --- Chain | Description A | No description available B | No description available Chain information for ranked_1.pdb #25 --- Chain | Description A | No description available B | No description available > ui tool show ""Model Panel"" > mmaker #25 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_0.pdb, chain A (#1) with ranked_1.pdb, chain A (#25), sequence alignment score = 1890.4 RMSD between 325 pruned atom pairs is 0.351 angstroms; (across all 360 pairs: 2.770) > mmaker #25 to #2 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_9.pdb, chain A (#2) with ranked_1.pdb, chain A (#25), sequence alignment score = 1890.4 RMSD between 313 pruned atom pairs is 0.271 angstroms; (across all 360 pairs: 3.449) > mmaker #25 to #3 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_8.pdb, chain A (#3) with ranked_1.pdb, chain A (#25), sequence alignment score = 1897 RMSD between 334 pruned atom pairs is 0.313 angstroms; (across all 360 pairs: 1.524) > mmaker #25 to #4 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_7.pdb, chain A (#4) with ranked_1.pdb, chain A (#25), sequence alignment score = 1887.4 RMSD between 316 pruned atom pairs is 0.319 angstroms; (across all 360 pairs: 3.455) > mmaker #25 to #4 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_7.pdb, chain A (#4) with ranked_1.pdb, chain A (#25), sequence alignment score = 1887.4 RMSD between 316 pruned atom pairs is 0.319 angstroms; (across all 360 pairs: 3.455) > mmaker #25 to #5 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_6.pdb, chain A (#5) with ranked_1.pdb, chain A (#25), sequence alignment score = 1904.2 RMSD between 337 pruned atom pairs is 0.340 angstroms; (across all 360 pairs: 1.298) > mmaker #25 to #5 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_6.pdb, chain A (#5) with ranked_1.pdb, chain A (#25), sequence alignment score = 1904.2 RMSD between 337 pruned atom pairs is 0.340 angstroms; (across all 360 pairs: 1.298) > mmaker #25 to #6 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_5.pdb, chain A (#6) with ranked_1.pdb, chain A (#25), sequence alignment score = 1890.4 RMSD between 320 pruned atom pairs is 0.312 angstroms; (across all 360 pairs: 1.951) > mmaker #25 to #7 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_4.pdb, chain A (#7) with ranked_1.pdb, chain A (#25), sequence alignment score = 1890.4 RMSD between 334 pruned atom pairs is 0.431 angstroms; (across all 360 pairs: 1.473) > mmaker #25 to #8 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_3.pdb, chain A (#8) with ranked_1.pdb, chain A (#25), sequence alignment score = 1878.4 RMSD between 311 pruned atom pairs is 0.270 angstroms; (across all 360 pairs: 4.802) > mmaker #25 to #9 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_24.pdb, chain A (#9) with ranked_1.pdb, chain A (#25), sequence alignment score = 1875.4 RMSD between 289 pruned atom pairs is 0.502 angstroms; (across all 360 pairs: 4.533) > mmaker #25 to #10 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_23.pdb, chain A (#10) with ranked_1.pdb, chain A (#25), sequence alignment score = 1886.2 RMSD between 308 pruned atom pairs is 0.446 angstroms; (across all 360 pairs: 6.049) > mmaker #25 to #11 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_22.pdb, chain A (#11) with ranked_1.pdb, chain A (#25), sequence alignment score = 1891.6 RMSD between 324 pruned atom pairs is 0.455 angstroms; (across all 360 pairs: 3.265) > mmaker #25 to #12 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_21.pdb, chain A (#12) with ranked_1.pdb, chain A (#25), sequence alignment score = 1887.4 RMSD between 316 pruned atom pairs is 0.529 angstroms; (across all 360 pairs: 3.850) > mmaker #25 to #13 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_20.pdb, chain A (#13) with ranked_1.pdb, chain A (#25), sequence alignment score = 1887.4 RMSD between 315 pruned atom pairs is 0.303 angstroms; (across all 360 pairs: 3.988) > mmaker #25 to #14 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_2.pdb, chain A (#14) with ranked_1.pdb, chain A (#25), sequence alignment score = 1887.4 RMSD between 319 pruned atom pairs is 0.308 angstroms; (across all 360 pairs: 2.822) > mmaker #25 to #15 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_19.pdb, chain A (#15) with ranked_1.pdb, chain A (#25), sequence alignment score = 1899.4 RMSD between 314 pruned atom pairs is 0.358 angstroms; (across all 360 pairs: 4.709) > mmaker #25 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_0.pdb, chain A (#1) with ranked_1.pdb, chain A (#25), sequence alignment score = 1890.4 RMSD between 325 pruned atom pairs is 0.351 angstroms; (across all 360 pairs: 2.770) > mmaker #25 to #16 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_18.pdb, chain A (#16) with ranked_1.pdb, chain A (#25), sequence alignment score = 1887.4 RMSD between 313 pruned atom pairs is 0.362 angstroms; (across all 360 pairs: 3.738) > mmaker #25 to #17 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_17.pdb, chain A (#17) with ranked_1.pdb, chain A (#25), sequence alignment score = 1889.8 RMSD between 313 pruned atom pairs is 0.368 angstroms; (across all 360 pairs: 1.979) > mmaker #25 to #18 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_16.pdb, chain A (#18) with ranked_1.pdb, chain A (#25), sequence alignment score = 1880.8 RMSD between 323 pruned atom pairs is 0.406 angstroms; (across all 360 pairs: 3.026) > mmaker #25 to #19 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_15.pdb, chain A (#19) with ranked_1.pdb, chain A (#25), sequence alignment score = 1899.4 RMSD between 325 pruned atom pairs is 0.392 angstroms; (across all 360 pairs: 2.637) > mmaker #25 to #20 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_14.pdb, chain A (#20) with ranked_1.pdb, chain A (#25), sequence alignment score = 1877.2 RMSD between 317 pruned atom pairs is 0.476 angstroms; (across all 360 pairs: 2.634) > mmaker #25 to #21 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_13.pdb, chain A (#21) with ranked_1.pdb, chain A (#25), sequence alignment score = 1920.4 RMSD between 347 pruned atom pairs is 0.291 angstroms; (across all 360 pairs: 2.170) > mmaker #25 to #22 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_12.pdb, chain A (#22) with ranked_1.pdb, chain A (#25), sequence alignment score = 1887.4 RMSD between 316 pruned atom pairs is 0.387 angstroms; (across all 360 pairs: 2.800) > mmaker #25 to #23 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_11.pdb, chain A (#23) with ranked_1.pdb, chain A (#25), sequence alignment score = 1892.8 RMSD between 316 pruned atom pairs is 0.371 angstroms; (across all 360 pairs: 3.164) > mmaker #25 to #24 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_10.pdb, chain A (#24) with ranked_1.pdb, chain A (#25), sequence alignment score = 1918 RMSD between 352 pruned atom pairs is 0.285 angstroms; (across all 360 pairs: 0.895) > mmaker #25 to #25 Must use different reference and match structures > hide #1 models > hide #24 models > show #24 models > show #1 models > hide #1-24 target m > mmaker #1 to #2 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_9.pdb, chain A (#2) with ranked_0.pdb, chain A (#1), sequence alignment score = 1926.4 RMSD between 317 pruned atom pairs is 0.327 angstroms; (across all 360 pairs: 5.415) > mmaker #1 to #3 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_8.pdb, chain A (#3) with ranked_0.pdb, chain A (#1), sequence alignment score = 1900 RMSD between 314 pruned atom pairs is 0.342 angstroms; (across all 360 pairs: 3.801) > mmaker #1 to #4 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_7.pdb, chain A (#4) with ranked_0.pdb, chain A (#1), sequence alignment score = 1923.4 RMSD between 343 pruned atom pairs is 0.175 angstroms; (across all 360 pairs: 2.581) > mmaker #1 to #5 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_6.pdb, chain A (#5) with ranked_0.pdb, chain A (#1), sequence alignment score = 1907.2 RMSD between 313 pruned atom pairs is 0.314 angstroms; (across all 360 pairs: 3.594) > mmaker #1 to # > matchmaker #1 to # Invalid ""to"" argument: invalid atoms specifier > mmaker #1 to #6 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_5.pdb, chain A (#6) with ranked_0.pdb, chain A (#1), sequence alignment score = 1926.4 RMSD between 323 pruned atom pairs is 0.386 angstroms; (across all 360 pairs: 3.663) > mmaker #1 to #6 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_5.pdb, chain A (#6) with ranked_0.pdb, chain A (#1), sequence alignment score = 1926.4 RMSD between 323 pruned atom pairs is 0.386 angstroms; (across all 360 pairs: 3.663) > mmaker #1 to #7 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_4.pdb, chain A (#7) with ranked_0.pdb, chain A (#1), sequence alignment score = 1926.4 RMSD between 345 pruned atom pairs is 0.317 angstroms; (across all 360 pairs: 2.214) > mmaker #1 to #8 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_3.pdb, chain A (#8) with ranked_0.pdb, chain A (#1), sequence alignment score = 1914.4 RMSD between 314 pruned atom pairs is 0.322 angstroms; (across all 360 pairs: 6.631) > mmaker #1 to #9 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_24.pdb, chain A (#9) with ranked_0.pdb, chain A (#1), sequence alignment score = 1904.8 RMSD between 298 pruned atom pairs is 0.522 angstroms; (across all 360 pairs: 2.717) > mmaker #1 to #10 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_23.pdb, chain A (#10) with ranked_0.pdb, chain A (#1), sequence alignment score = 1909 RMSD between 317 pruned atom pairs is 0.451 angstroms; (across all 360 pairs: 3.846) > mmaker #1 to #11 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_22.pdb, chain A (#11) with ranked_0.pdb, chain A (#1), sequence alignment score = 1894.6 RMSD between 326 pruned atom pairs is 0.415 angstroms; (across all 360 pairs: 1.355) > mmaker #1 to #12 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_21.pdb, chain A (#12) with ranked_0.pdb, chain A (#1), sequence alignment score = 1923.4 RMSD between 329 pruned atom pairs is 0.559 angstroms; (across all 360 pairs: 1.733) > mmaker #1 to #13 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_20.pdb, chain A (#13) with ranked_0.pdb, chain A (#1), sequence alignment score = 1923.4 RMSD between 340 pruned atom pairs is 0.351 angstroms; (across all 360 pairs: 1.756) > mmaker #1 to #14 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_2.pdb, chain A (#14) with ranked_0.pdb, chain A (#1), sequence alignment score = 1923.4 RMSD between 343 pruned atom pairs is 0.226 angstroms; (across all 360 pairs: 1.444) > mmaker #1 to #15 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_19.pdb, chain A (#15) with ranked_0.pdb, chain A (#1), sequence alignment score = 1915.6 RMSD between 319 pruned atom pairs is 0.394 angstroms; (across all 360 pairs: 5.114) > mmaker #1 to #1 Must use different reference and match structures > mmaker #1 to #16 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_18.pdb, chain A (#16) with ranked_0.pdb, chain A (#1), sequence alignment score = 1903.6 RMSD between 320 pruned atom pairs is 0.390 angstroms; (across all 360 pairs: 3.278) > mmaker #1 to #17 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_17.pdb, chain A (#17) with ranked_0.pdb, chain A (#1), sequence alignment score = 1906 RMSD between 325 pruned atom pairs is 0.428 angstroms; (across all 360 pairs: 2.417) > mmaker #1 to #18 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_16.pdb, chain A (#18) with ranked_0.pdb, chain A (#1), sequence alignment score = 1897 RMSD between 321 pruned atom pairs is 0.354 angstroms; (across all 360 pairs: 4.933) > mmaker #1 to #19 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_15.pdb, chain A (#19) with ranked_0.pdb, chain A (#1), sequence alignment score = 1915.6 RMSD between 321 pruned atom pairs is 0.323 angstroms; (across all 360 pairs: 4.504) > mmaker #1 to #20 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_14.pdb, chain A (#20) with ranked_0.pdb, chain A (#1), sequence alignment score = 1913.2 RMSD between 319 pruned atom pairs is 0.359 angstroms; (across all 360 pairs: 4.517) > mmaker #1 to #21 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_13.pdb, chain A (#21) with ranked_0.pdb, chain A (#1), sequence alignment score = 1883.8 RMSD between 319 pruned atom pairs is 0.345 angstroms; (across all 360 pairs: 1.966) > mmaker #1 to #22 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_12.pdb, chain A (#22) with ranked_0.pdb, chain A (#1), sequence alignment score = 1923.4 RMSD between 336 pruned atom pairs is 0.417 angstroms; (across all 360 pairs: 1.903) > mmaker #1 to #23 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_11.pdb, chain A (#23) with ranked_0.pdb, chain A (#1), sequence alignment score = 1909 RMSD between 334 pruned atom pairs is 0.417 angstroms; (across all 360 pairs: 3.133) > mmaker #1 to #2 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_9.pdb, chain A (#2) with ranked_0.pdb, chain A (#1), sequence alignment score = 1926.4 RMSD between 317 pruned atom pairs is 0.327 angstroms; (across all 360 pairs: 5.415) > mmaker #1 to #24 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_10.pdb, chain A (#24) with ranked_0.pdb, chain A (#1), sequence alignment score = 1901.2 RMSD between 322 pruned atom pairs is 0.392 angstroms; (across all 360 pairs: 2.381) > mmaker #1 to #25 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_1.pdb, chain A (#25) with ranked_0.pdb, chain A (#1), sequence alignment score = 1890.4 RMSD between 325 pruned atom pairs is 0.351 angstroms; (across all 360 pairs: 2.770) > hide #25 models > show #1 models > show #2 models > show #3 models > show #4 models > hide #4 models > hide #3 models > hide #2 models > show #25 models > hide #25 models > show #2 models > hide #2 models > mmaker #2 to # > matchmaker #2 to # Invalid ""to"" argument: invalid atoms specifier > mmaker #2 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_0.pdb, chain A (#1) with ranked_9.pdb, chain A (#2), sequence alignment score = 1926.4 RMSD between 317 pruned atom pairs is 0.327 angstroms; (across all 360 pairs: 5.415) > mmaker #3 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_0.pdb, chain A (#1) with ranked_8.pdb, chain A (#3), sequence alignment score = 1900 RMSD between 314 pruned atom pairs is 0.342 angstroms; (across all 360 pairs: 3.801) > mmaker #3 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_0.pdb, chain A (#1) with ranked_8.pdb, chain A (#3), sequence alignment score = 1900 RMSD between 314 pruned atom pairs is 0.342 angstroms; (across all 360 pairs: 3.801) > mmaker #4 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_0.pdb, chain A (#1) with ranked_7.pdb, chain A (#4), sequence alignment score = 1923.4 RMSD between 343 pruned atom pairs is 0.175 angstroms; (across all 360 pairs: 2.581) > mmaker #5 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_0.pdb, chain A (#1) with ranked_6.pdb, chain A (#5), sequence alignment score = 1907.2 RMSD between 313 pruned atom pairs is 0.314 angstroms; (across all 360 pairs: 3.594) > mmaker #6 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_0.pdb, chain A (#1) with ranked_5.pdb, chain A (#6), sequence alignment score = 1926.4 RMSD between 323 pruned atom pairs is 0.386 angstroms; (across all 360 pairs: 3.663) > mmaker #7 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_0.pdb, chain A (#1) with ranked_4.pdb, chain A (#7), sequence alignment score = 1926.4 RMSD between 345 pruned atom pairs is 0.317 angstroms; (across all 360 pairs: 2.214) > mmaker #8 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_0.pdb, chain A (#1) with ranked_3.pdb, chain A (#8), sequence alignment score = 1914.4 RMSD between 314 pruned atom pairs is 0.322 angstroms; (across all 360 pairs: 6.631) > mmaker #9 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_0.pdb, chain A (#1) with ranked_24.pdb, chain A (#9), sequence alignment score = 1904.8 RMSD between 298 pruned atom pairs is 0.522 angstroms; (across all 360 pairs: 2.717) > mmaker #10 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_0.pdb, chain A (#1) with ranked_23.pdb, chain A (#10), sequence alignment score = 1909 RMSD between 317 pruned atom pairs is 0.451 angstroms; (across all 360 pairs: 3.846) > mmaker #11 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_0.pdb, chain A (#1) with ranked_22.pdb, chain A (#11), sequence alignment score = 1894.6 RMSD between 326 pruned atom pairs is 0.415 angstroms; (across all 360 pairs: 1.355) > mmaker #12 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_0.pdb, chain A (#1) with ranked_21.pdb, chain A (#12), sequence alignment score = 1923.4 RMSD between 329 pruned atom pairs is 0.559 angstroms; (across all 360 pairs: 1.733) > mmaker #13 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_0.pdb, chain A (#1) with ranked_20.pdb, chain A (#13), sequence alignment score = 1923.4 RMSD between 340 pruned atom pairs is 0.351 angstroms; (across all 360 pairs: 1.756) > mmaker #14 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_0.pdb, chain A (#1) with ranked_2.pdb, chain A (#14), sequence alignment score = 1923.4 RMSD between 343 pruned atom pairs is 0.226 angstroms; (across all 360 pairs: 1.444) > mmaker #15to #1 > matchmaker #15to #1 Missing or invalid ""matchAtoms"" argument: only initial part ""#15"" of atom specifier valid > mmaker #15 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_0.pdb, chain A (#1) with ranked_19.pdb, chain A (#15), sequence alignment score = 1915.6 RMSD between 319 pruned atom pairs is 0.394 angstroms; (across all 360 pairs: 5.114) > mmaker #16 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_0.pdb, chain A (#1) with ranked_18.pdb, chain A (#16), sequence alignment score = 1903.6 RMSD between 320 pruned atom pairs is 0.390 angstroms; (across all 360 pairs: 3.278) > mmaker #17 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_0.pdb, chain A (#1) with ranked_17.pdb, chain A (#17), sequence alignment score = 1906 RMSD between 325 pruned atom pairs is 0.428 angstroms; (across all 360 pairs: 2.417) > mmaker #18 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_0.pdb, chain A (#1) with ranked_16.pdb, chain A (#18), sequence alignment score = 1897 RMSD between 321 pruned atom pairs is 0.354 angstroms; (across all 360 pairs: 4.933) > mmaker #19 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_0.pdb, chain A (#1) with ranked_15.pdb, chain A (#19), sequence alignment score = 1915.6 RMSD between 321 pruned atom pairs is 0.323 angstroms; (across all 360 pairs: 4.504) > mmaker #20 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_0.pdb, chain A (#1) with ranked_14.pdb, chain A (#20), sequence alignment score = 1913.2 RMSD between 319 pruned atom pairs is 0.359 angstroms; (across all 360 pairs: 4.517) > mmaker #21 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_0.pdb, chain A (#1) with ranked_13.pdb, chain A (#21), sequence alignment score = 1883.8 RMSD between 319 pruned atom pairs is 0.345 angstroms; (across all 360 pairs: 1.966) > mmaker #22 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_0.pdb, chain A (#1) with ranked_12.pdb, chain A (#22), sequence alignment score = 1923.4 RMSD between 336 pruned atom pairs is 0.417 angstroms; (across all 360 pairs: 1.903) > mmaker #23 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_0.pdb, chain A (#1) with ranked_11.pdb, chain A (#23), sequence alignment score = 1909 RMSD between 334 pruned atom pairs is 0.417 angstroms; (across all 360 pairs: 3.133) > mmaker #24 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_0.pdb, chain A (#1) with ranked_10.pdb, chain A (#24), sequence alignment score = 1901.2 RMSD between 322 pruned atom pairs is 0.392 angstroms; (across all 360 pairs: 2.381) > mmaker #25 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_0.pdb, chain A (#1) with ranked_1.pdb, chain A (#25), sequence alignment score = 1890.4 RMSD between 325 pruned atom pairs is 0.351 angstroms; (across all 360 pairs: 2.770) > show #2 models > show #3 models > show #4 models > show #5 models > show #6 models > show #7 models > show #8 models > show #9 models > show #10 models > show #11 models > show #13 models > show #14 models > hide #13 models > show #12 models > show #13 models > show #15 models > show #16 models > show #17 models > show #18 models > show #19 models > show #20 models > show #21 models > show #22 models > show #23 models > show #24 models > show #25 models > save > /Users/dawson/Workspace/SD/AF/2022-07-14_CCR2_CCl2_FDB_MM/AF2ou/CCR2_CCL2_multi/rank_25_mm.cxs ——— End of log from Mon Jul 18 11:51:41 2022 ——— opened ChimeraX session Traceback (most recent call last): File ""/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/ui/gui.py"", line 284, in event _open_dropped_file(self.session, event.file()) File ""/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/ui/gui.py"", line 1945, in _open_dropped_file run(session, 'open %s' % FileNameArg.unparse(path)) File ""/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/commands/run.py"", line 38, in run results = command.run(text, log=log, return_json=return_json) File ""/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/commands/cli.py"", line 2897, in run result = ci.function(session, **kw_args) File ""/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/open_command/cmd.py"", line 118, in cmd_open models = Command(session, registry=registry).run(provider_cmd_text, log=log)[0] File ""/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/commands/cli.py"", line 2897, in run result = ci.function(session, **kw_args) File ""/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/open_command/cmd.py"", line 263, in provider_open session.logger.status(status, log=status) File ""/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/logger.py"", line 459, in status StatusLogger.status(self, msg, **kw) File ""/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/logger.py"", line 199, in status if l.status(msg, color, secondary) and getattr(l, ""excludes_other_logs"", True): File ""/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/ui/gui.py"", line 910, in status sbar.status(msg, color, secondary) File ""/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/ui/statusbar.py"", line 150, in status r.draw_background() File ""/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/graphics/opengl.py"", line 1168, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. An error occurred in drawing the scene. Redrawing graphics is now stopped to avoid a continuous stream of error messages. To restart graphics use the command ""graphics restart"" after changing the settings that caused the error. GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) Traceback (most recent call last): File ""/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/updateloop.py"", line 73, in draw_new_frame view.draw(check_for_changes = False) File ""/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/graphics/view.py"", line 165, in draw self._draw_scene(camera, drawings) File ""/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/graphics/view.py"", line 215, in _draw_scene camera.draw_background(vnum, r) File ""/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/graphics/camera.py"", line 184, in draw_background render.draw_background() File ""/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/graphics/opengl.py"", line 1168, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL version: 4.1 ATI-4.8.54 OpenGL renderer: AMD Radeon RX Vega 56 OpenGL Engine OpenGL vendor: ATI Technologies Inc. Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.3.0, Qt 6.3.0 Qt runtime version: 6.3.0 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro14,2 Processor Name: Dual-Core Intel Core i7 Processor Speed: 3.5 GHz Number of Processors: 1 Total Number of Cores: 2 L2 Cache (per Core): 256 KB L3 Cache: 4 MB Hyper-Threading Technology: Enabled Memory: 16 GB System Firmware Version: 451.120.7.0.0 OS Loader Version: 540.120.3~6 SMC Version (system): 2.44f6 Software: System Software Overview: System Version: macOS 12.4 (21F79) Kernel Version: Darwin 21.5.0 Time since boot: 2:28 Graphics/Displays: Intel Iris Plus Graphics 650: Chipset Model: Intel Iris Plus Graphics 650 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x5927 Revision ID: 0x0006 Metal Family: Supported, Metal GPUFamily macOS 2 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Framebuffer Depth: 30-Bit Color (ARGB2101010) Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal LG UltraFine: Resolution: 4096 x 2304 UI Looks like: 2048 x 1152 @ 60.00Hz Framebuffer Depth: 30-Bit Color (ARGB2101010) Display Serial Number: 806NTSU9V518 Mirror: Off Online: Yes Rotation: Supported Automatically Adjust Brightness: Yes Connection Type: Thunderbolt/DisplayPort LG UltraFine: Resolution: 5120 x 2880 (5K/UHD+ - Ultra High Definition Plus) UI Looks like: 2560 x 1440 Framebuffer Depth: 30-Bit Color (ARGB2101010) Display Serial Number: 706NTZN4S701 Main Display: Yes Mirror: Off Online: Yes Rotation: Supported Automatically Adjust Brightness: Yes Connection Type: Thunderbolt/DisplayPort AMD Radeon RX Vega 56: Chipset Model: AMD Radeon RX Vega 56 Type: External GPU Bus: PCIe PCIe Lane Width: x16 VRAM (Total): 8 GB Vendor: AMD (0x1002) Device ID: 0x687f Revision ID: 0x00c3 Metal Family: Supported, Metal GPUFamily macOS 2 GPU is Removable: Yes Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.3 Babel: 2.10.1 backcall: 0.2.0 blockdiag: 3.0.0 certifi: 2021.10.8 cftime: 1.6.0 charset-normalizer: 2.0.12 ChimeraX-AddCharge: 1.2.3 ChimeraX-AddH: 2.1.11 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2.1 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.4.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.39.1 ChimeraX-AtomicLibrary: 7.0 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.1 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.1 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.7 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.2 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.1 ChimeraX-CommandLine: 1.2.3 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.4 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.1 ChimeraX-DistMonitor: 1.1.5 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.2 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.1.2 ChimeraX-Help: 1.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0 ChimeraX-Label: 1.1.1 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 2.0.6 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.7 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.5.5 ChimeraX-ModelPanel: 1.3.2 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.2 ChimeraX-OpenCommand: 1.9 ChimeraX-PDB: 2.6.6 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.6 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.1 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.8 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.0.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.1 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.18.3 ChimeraX-uniprot: 2.2 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.1.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.1.0 ChimeraX-Zone: 1.0 colorama: 0.4.4 cxservices: 1.2 cycler: 0.11.0 Cython: 0.29.26 debugpy: 1.6.0 decorator: 5.1.1 docutils: 0.17.1 entrypoints: 0.4 filelock: 3.4.2 fonttools: 4.33.3 funcparserlib: 1.0.0 grako: 3.16.5 h5py: 3.7.0 html2text: 2020.1.16 idna: 3.3 ihm: 0.27 imagecodecs: 2021.11.20 imagesize: 1.3.0 ipykernel: 6.6.1 ipython: 7.31.1 ipython-genutils: 0.2.0 jedi: 0.18.1 Jinja2: 3.0.3 jupyter-client: 7.1.0 jupyter-core: 4.10.0 kiwisolver: 1.4.2 line-profiler: 3.4.0 lxml: 4.7.1 lz4: 3.1.10 MarkupSafe: 2.1.1 matplotlib: 3.5.1 matplotlib-inline: 0.1.3 msgpack: 1.0.3 nest-asyncio: 1.5.5 netCDF4: 1.5.8 networkx: 2.6.3 numexpr: 2.8.1 numpy: 1.22.1 openvr: 1.16.802 packaging: 21.0 ParmEd: 3.4.3 parso: 0.8.3 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.0.1 pip: 21.3.1 pkginfo: 1.8.2 prompt-toolkit: 3.0.29 psutil: 5.9.0 ptyprocess: 0.7.0 pycollada: 0.7.2 pydicom: 2.2.2 Pygments: 2.11.2 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 PyQt6-commercial: 6.3.0 PyQt6-Qt6: 6.3.0 PyQt6-sip: 13.3.1 PyQt6-WebEngine-commercial: 6.3.0 PyQt6-WebEngine-Qt6: 6.3.0 python-dateutil: 2.8.2 pytz: 2022.1 pyzmq: 23.1.0 qtconsole: 5.3.0 QtPy: 2.1.0 RandomWords: 0.3.0 requests: 2.27.1 scipy: 1.7.3 setuptools: 59.8.0 sfftk-rw: 0.7.2 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 4.3.2 sphinx-autodoc-typehints: 1.15.2 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-community: 1.0.0 tables: 3.7.0 tifffile: 2021.11.2 tinyarray: 1.2.4 tornado: 6.1 traitlets: 5.1.1 urllib3: 1.26.9 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.37.1 wheel-filename: 1.3.0 }}} " defect closed normal Graphics can't reproduce all ChimeraX