id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
7238	Added trim option to AlphaFold panel	phil.cruz@…	Tom Goddard	"Phil would like to be able to turn off trimming when fetching AlphaFold database models from the AlphaFold GUI so that predicted aligned error plots can be used.  Currently the AlphaFold model has residues deleted that are not part of the experimental sequence used to fetch it.  But currently ChimeraX cannot show predicted aligned error (PAE) on an AlphaFold model with deleted residues.  By avoiding trimming, PAE can be used for coloring.

Another and possibly better improvement would be to allow use of PAE on AlphaFold models with deleted residues.
"	enhancement	closed	moderate		Structure Prediction		fixed		Elaine Meng				all	ChimeraX