id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 7206 Volume not in Surface Color volume menu chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-10.16-x86_64-i386-64bit ChimeraX Version: 1.4rc202205060510 (2022-05-06 05:10:33 UTC) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 1.4rc202205060510 (2022-05-06) © 2016-2022 Regents of the University of California. All rights reserved. > open ""/Users/xiaoyingyu/Dropbox (LJI)/EOS/COVID/EOS antibody/SARS omicron > paper Figure/localres/1H2 2A10 J61 73-localres.cxs"" Opened cryosparc_P94_J77_map_locres-zflip.mrc as #1, grid size 480,480,480, pixel 1.1, shown at level 6.73, step 2, values float32 Opened cryosparc_P94_J61_007_volume_map-zflip.mrc as #2, grid size 480,480,480, pixel 1.1, shown at level 0.0999, step 1, values float32 Opened cryosparc_P94_J73_010_volume_map-zflip.mrc as #3, grid size 480,480,480, pixel 1.1, shown at level 0.147, step 1, values float32 Opened cryosparc_P94_J75_map_locres-zflip.mrc as #4, grid size 480,480,480, pixel 1.1, shown at level 0.00261, step 2, values float32 Log from Thu Jun 30 16:12:37 2022UCSF ChimeraX version: 1.4rc202205060510 (2022-05-06) © 2016-2022 Regents of the University of California. All rights reserved. > open ""/Users/xiaoyingyu/Dropbox (LJI)/EOS/COVID/EOS antibody/SARS omicron > paper Figure/localres/1H2 2A10 J61 73-localres.cxs"" Opened cryosparc_P94_J77_map_locres-zflip.mrc as #1, grid size 480,480,480, pixel 1.1, shown at level 6.73, step 2, values float32 Opened cryosparc_P94_J61_007_volume_map-zflip.mrc as #2, grid size 480,480,480, pixel 1.1, shown at level 0.0999, step 1, values float32 Opened cryosparc_P94_J73_010_volume_map-zflip.mrc as #3, grid size 480,480,480, pixel 1.1, shown at level 0.147, step 1, values float32 Opened cryosparc_P94_J75_map_locres-zflip.mrc as #4, grid size 480,480,480, pixel 1.1, shown at level 0.00261, step 2, values float32 Map values for surface ""surface"": minimum 0, mean 3.402, maximum 19.5 Log from Thu Jun 30 14:42:38 2022UCSF ChimeraX version: 1.4rc202205060510 (2022-05-06) © 2016-2022 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/xiaoyingyu/Dropbox (LJI)/EOS/COVID/EOS > antibody/1H2_2A10/J61-whole map/cryosparc_P94_J77_map_locres-zflip.mrc"" Opened cryosparc_P94_J77_map_locres-zflip.mrc as #1, grid size 480,480,480, pixel 1.1, shown at level 6.73, step 2, values float32 > open ""/Users/xiaoyingyu/Dropbox (LJI)/EOS/COVID/EOS > antibody/1H2_2A10/J61-whole map/cryosparc_P94_J61_007_volume_map-zflip.mrc"" Opened cryosparc_P94_J61_007_volume_map-zflip.mrc as #2, grid size 480,480,480, pixel 1.1, shown at level 0.0271, step 2, values float32 > set bgColor white > ui tool show ""Surface Color"" > color sample #1.1 map #2 palette #0000ff:#00ffff:#00ff00:#ffff00:#ff0000 Map values for surface ""surface"": minimum -0.06908, mean 0.01486, maximum 0.1974 > hide #!1 models > color sample #2.1 map #1 palette > -0.06908,#0000ff:-0.002454,#00ffff:0.06417,#00ff00:0.1308,#ffff00:0.1974,#ff0000 Map values for surface ""surface"": minimum 0, mean 5.291, maximum 21.83 Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with QFlags(NoModifier) Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with QFlags(ShiftModifier) Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with QFlags(ControlModifier) Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with QFlags(ShiftModifier|ControlModifier) Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with QFlags(AltModifier) Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with QFlags(ShiftModifier|AltModifier) Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with QFlags(ControlModifier|AltModifier) Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with QFlags(ShiftModifier|ControlModifier|AltModifier) Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with QFlags(MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with QFlags(ShiftModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with QFlags(ControlModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with QFlags(ShiftModifier|ControlModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with QFlags(AltModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with QFlags(ShiftModifier|AltModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with QFlags(ControlModifier|AltModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with QFlags(NoModifier) Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with QFlags(ShiftModifier) Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with QFlags(ControlModifier) Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with QFlags(ShiftModifier|ControlModifier) Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with QFlags(AltModifier) Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with QFlags(ShiftModifier|AltModifier) Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with QFlags(ControlModifier|AltModifier) Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with QFlags(ShiftModifier|ControlModifier|AltModifier) Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with QFlags(MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with QFlags(ShiftModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with QFlags(ControlModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with QFlags(ShiftModifier|ControlModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with QFlags(AltModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with QFlags(ShiftModifier|AltModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with QFlags(ControlModifier|AltModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier) > color sample #2.1 map #1 palette > 3,#0000ff:4,#00ffff:5,#00ff00:6,#ffff00:7,#ff0000 Map values for surface ""surface"": minimum 0, mean 5.291, maximum 21.83 > volume #2 step 1 > volume #2 level 0.07422 > volume #2 level 0.09989 > save ""/Users/xiaoyingyu/Dropbox (LJI)/EOS/COVID/EOS antibody/SARS omicron > paper Figure/localres/1H2 2A10 whole map-J61-localres.cxs"" includeMaps true > open ""/Users/xiaoyingyu/Dropbox (LJI)/EOS/COVID/EOS > antibody/1H2_2A10/cryosparc_P94_J73_010_volume_map-zflip.mrc"" Opened cryosparc_P94_J73_010_volume_map-zflip.mrc as #3, grid size 480,480,480, pixel 1.1, shown at level 0.0217, step 2, values float32 > open ""/Users/xiaoyingyu/Dropbox (LJI)/EOS/COVID/EOS > antibody/1H2_2A10/cryosparc_P94_J75_map_locres-zflip.mrc"" Opened cryosparc_P94_J75_map_locres-zflip.mrc as #4, grid size 480,480,480, pixel 1.1, shown at level 0.00261, step 2, values float32 > hide #!4 models > volume #3 step 1 > volume #3 level 0.06599 > volume #3 level 0.09921 > hide #!2 models > volume #3 level 0.1472 > color sample #3.1 map #4 palette > 3,#0000ff:4,#00ffff:5,#00ff00:6,#ffff00:7,#ff0000 Map values for surface ""surface"": minimum 0, mean 3.402, maximum 19.5 > show #!2 models > hide #!3 models > hide #!2 models > show #!2 models > save ""/Users/xiaoyingyu/Dropbox (LJI)/EOS/COVID/EOS antibody/SARS omicron > paper Figure/localres/1H2 2A10 J61 73-localres.cxs"" includeMaps true > key rainbow :3 :4 :5 :6 :7 showTool true > ui mousemode right ""color key"" > ui mousemode right translate > save ""/Users/xiaoyingyu/Dropbox (LJI)/EOS/COVID/EOS antibody/SARS omicron > paper Figure/localres/1H2 2A10 J61 73-localres.cxs"" includeMaps true > save /Users/xiaoyingyu/Desktop/image35.png supersample 3 > hide #!2 models > show #!3 models > save /Users/xiaoyingyu/Desktop/image35.png supersample 3 Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(NoModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ShiftModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ControlModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ShiftModifier|ControlModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(AltModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ShiftModifier|AltModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ControlModifier|AltModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ShiftModifier|ControlModifier|AltModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ShiftModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ControlModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ShiftModifier|ControlModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(AltModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ShiftModifier|AltModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ControlModifier|AltModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier) > view matrix camera position: 0.25293,-0.04303,-0.96653,-492.36,0.96678,0.049294,0.2508,464.62,0.036852,-0.99786,0.054069,309.56 model positions: #1,1,0,0,0,0,1,0,0,0,0,1,0,#1.1,1,0,0,0,0,1,0,0,0,0,1,0,#2,1,0,0,0,0,1,0,0,0,0,1,0,#2.1,1,0,0,0,0,1,0,0,0,0,1,0,#3,1,0,0,0,0,1,0,0,0,0,1,0,#3.1,1,0,0,0,0,1,0,0,0,0,1,0,#4,1,0,0,0,0,1,0,0,0,0,1,0,#4.1,1,0,0,0,0,1,0,0,0,0,1,0 Mismatch between Cocoa '\x0' and Carbon 'c' for virtual key 8 with QFlags(NoModifier) Mismatch between Cocoa '\x0' and Carbon 'C' for virtual key 8 with QFlags(ShiftModifier) Mismatch between Cocoa '\x0' and Carbon 'c' for virtual key 8 with QFlags(ControlModifier) Mismatch between Cocoa '\x0' and Carbon 'c' for virtual key 8 with QFlags(ShiftModifier|ControlModifier) Mismatch between Cocoa '\x0' and Carbon '\u00e7' for virtual key 8 with QFlags(AltModifier) Mismatch between Cocoa '\x0' and Carbon '\u00c7' for virtual key 8 with QFlags(ShiftModifier|AltModifier) Mismatch between Cocoa '\x0' and Carbon '\u00e7' for virtual key 8 with QFlags(ControlModifier|AltModifier) Mismatch between Cocoa '\x0' and Carbon '\u00c7' for virtual key 8 with QFlags(ShiftModifier|ControlModifier|AltModifier) Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with QFlags(MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with QFlags(ShiftModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with QFlags(ControlModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with QFlags(ShiftModifier|ControlModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with QFlags(AltModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with QFlags(ShiftModifier|AltModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with QFlags(ControlModifier|AltModifier|MetaModifier) Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier) > view matrix camera position: 0.25293,-0.04303,-0.96653,-492.36,0.96678,0.049294,0.2508,464.62,0.036852,-0.99786,0.054069,309.56 model positions: #1,1,0,0,0,0,1,0,0,0,0,1,0,#1.1,1,0,0,0,0,1,0,0,0,0,1,0,#2,1,0,0,0,0,1,0,0,0,0,1,0,#2.1,1,0,0,0,0,1,0,0,0,0,1,0,#3,1,0,0,0,0,1,0,0,0,0,1,0,#3.1,1,0,0,0,0,1,0,0,0,0,1,0,#4,1,0,0,0,0,1,0,0,0,0,1,0,#4.1,1,0,0,0,0,1,0,0,0,0,1,0 > save ""/Users/xiaoyingyu/Dropbox (LJI)/EOS/COVID/EOS antibody/SARS omicron > paper Figure/localres/1H2 2A10 J61 73-localres.cxs"" includeMaps true ——— End of log from Thu Jun 30 14:42:38 2022 ——— opened ChimeraX session > lighting soft > graphics silhouettes true > save ""/Users/xiaoyingyu/Dropbox (LJI)/EOS/COVID/EOS antibody/SARS omicron > paper Figure/localres/1H2 2A10 J61 73-localres.cxs"" includeMaps true ——— End of log from Thu Jun 30 16:12:37 2022 ——— opened ChimeraX session > close #1 > close #4 > open ""/Users/xiaoyingyu/Dropbox (LJI)/EOS/COVID/EOS > antibody/1H2_2A10/cryosparc_P94_J77_map_locres-zflip.mrc"" Opened cryosparc_P94_J77_map_locres-zflip.mrc as #1, grid size 480,480,480, pixel 1.1, shown at level 4.93, step 2, values float32 > open ""/Users/xiaoyingyu/Dropbox (LJI)/EOS/COVID/EOS > antibody/1H2_2A10/cryosparc_P94_J79_map_locres-zflip.mrc"" Opened cryosparc_P94_J79_map_locres-zflip.mrc as #4, grid size 480,480,480, pixel 1.1, shown at level 0.0021, step 2, values float32 > hide #!1 models > hide #!4 models > ui tool show ""Surface Color"" Traceback (most recent call last): File ""/Applications/ChimeraX-1.4-rc2022.05.06.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/toolshed/info.py"", line 559, in start_tool ti = api._api_caller.start_tool(api, session, self, tool_info) File ""/Applications/ChimeraX-1.4-rc2022.05.06.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/toolshed/__init__.py"", line 1266, in start_tool return cls._get_func(api, ""start_tool"")(session, ti.name) File ""/Applications/ChimeraX-1.4-rc2022.05.06.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/surface/__init__.py"", line 94, in start_tool ti = surfcolorgui.show_surface_color_panel(session) File ""/Applications/ChimeraX-1.4-rc2022.05.06.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/surface/surfcolorgui.py"", line 697, in show_surface_color_panel return surface_color_panel(session, create = True) File ""/Applications/ChimeraX-1.4-rc2022.05.06.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/surface/surfcolorgui.py"", line 692, in surface_color_panel return SurfaceColorGUI.get_singleton(session, create=create) File ""/Applications/ChimeraX-1.4-rc2022.05.06.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/surface/surfcolorgui.py"", line 76, in get_singleton return tools.get_singleton(session, SurfaceColorGUI, 'Surface Color', File ""/Applications/ChimeraX-1.4-rc2022.05.06.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/tools.py"", line 193, in get_singleton tinst = tool_class(session, tool_name, **kw) File ""/Applications/ChimeraX-1.4-rc2022.05.06.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/surface/surfcolorgui.py"", line 64, in __init__ self._surface_chosen() File ""/Applications/ChimeraX-1.4-rc2022.05.06.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/surface/surfcolorgui.py"", line 377, in _surface_chosen self._map.value = sc.volume File ""/Applications/ChimeraX-1.4-rc2022.05.06.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/ui/widgets/composite.py"", line 396, in _set_value self._menu.value = value File ""/Applications/ChimeraX-1.4-rc2022.05.06.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/ui/widgets/item_chooser.py"", line 345, in value self.set_value(val) File ""/Applications/ChimeraX-1.4-rc2022.05.06.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/ui/widgets/item_chooser.py"", line 367, in set_value self.setText(self.value_map[val]) KeyError: During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""/Applications/ChimeraX-1.4-rc2022.05.06.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/volume_menu/volmenu.py"", line 55, in callback run(ses, ""ui tool show %s"" % StringArg.unparse(tool_name)) File ""/Applications/ChimeraX-1.4-rc2022.05.06.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/commands/run.py"", line 38, in run results = command.run(text, log=log, return_json=return_json) File ""/Applications/ChimeraX-1.4-rc2022.05.06.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/commands/cli.py"", line 2897, in run result = ci.function(session, **kw_args) File ""/Applications/ChimeraX-1.4-rc2022.05.06.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/ui/cmd.py"", line 219, in ui_tool_show bi.start_tool(session, name) File ""/Applications/ChimeraX-1.4-rc2022.05.06.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/toolshed/info.py"", line 564, in start_tool raise ToolshedError( chimerax.core.toolshed.ToolshedError: start_tool() failed for tool Surface Color in bundle ChimeraX-Surface: Populating font family aliases took 389 ms. Replace uses of missing font family "".AppleSystemUIFont"" with one that exists to avoid this cost. chimerax.core.toolshed.ToolshedError: start_tool() failed for tool Surface Color in bundle ChimeraX-Surface: File ""/Applications/ChimeraX-1.4-rc2022.05.06.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/toolshed/info.py"", line 564, in start_tool raise ToolshedError( See log for complete Python traceback. OpenGL version: 4.1 ATI-4.8.54 OpenGL renderer: AMD Radeon Pro 560X OpenGL Engine OpenGL vendor: ATI Technologies Inc. Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.3.0, Qt 6.3.0 Qt runtime version: 6.3.0 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro15,1 Processor Name: 8-Core Intel Core i9 Processor Speed: 2.4 GHz Number of Processors: 1 Total Number of Cores: 8 L2 Cache (per Core): 256 KB L3 Cache: 16 MB Hyper-Threading Technology: Enabled Memory: 32 GB System Firmware Version: 1731.120.10.0.0 (iBridge: 19.16.15071.0.0,0) OS Loader Version: 540.120.3~6 Software: System Software Overview: System Version: macOS 12.4 (21F79) Kernel Version: Darwin 21.5.0 Time since boot: 2 days 4:54 Graphics/Displays: Intel UHD Graphics 630: Chipset Model: Intel UHD Graphics 630 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x3e9b Revision ID: 0x0002 Automatic Graphics Switching: Supported gMux Version: 5.0.0 Metal Family: Supported, Metal GPUFamily macOS 2 Radeon Pro 560X: Chipset Model: Radeon Pro 560X Type: GPU Bus: PCIe PCIe Lane Width: x8 VRAM (Total): 4 GB Vendor: AMD (0x1002) Device ID: 0x67ef Revision ID: 0x00c2 ROM Revision: 113-C980AL-075 VBIOS Version: 113-C97501U-005 EFI Driver Version: 01.A1.075 Automatic Graphics Switching: Supported gMux Version: 5.0.0 Metal Family: Supported, Metal GPUFamily macOS 2 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2880 x 1800 Retina Framebuffer Depth: 30-Bit Color (ARGB2101010) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal EA244WMi: Resolution: 1920 x 1200 (WUXGA - Widescreen Ultra eXtended Graphics Array) UI Looks like: 1920 x 1200 @ 60.00Hz Framebuffer Depth: 30-Bit Color (ARGB2101010) Display Serial Number: 6Z310642NB Mirror: Off Online: Yes Rotation: Supported Connection Type: Thunderbolt/DisplayPort Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.3 Babel: 2.10.1 backcall: 0.2.0 blockdiag: 3.0.0 certifi: 2021.10.8 cftime: 1.6.0 charset-normalizer: 2.0.12 ChimeraX-AddCharge: 1.2.3 ChimeraX-AddH: 2.1.11 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2.1 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.4.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.39.1 ChimeraX-AtomicLibrary: 7.0 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.1 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.1 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.7 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.2 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.1 ChimeraX-CommandLine: 1.2.3 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.4rc202205060510 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.1 ChimeraX-DistMonitor: 1.1.5 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.2 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.1.2 ChimeraX-Help: 1.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0 ChimeraX-Label: 1.1.1 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 2.0.6 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.7 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.5.5 ChimeraX-ModelPanel: 1.3.2 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.2 ChimeraX-OpenCommand: 1.9 ChimeraX-PDB: 2.6.6 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.6 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.1 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.8 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.0.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.1 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.18.2 ChimeraX-uniprot: 2.2 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.1.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.1.0 ChimeraX-Zone: 1.0 colorama: 0.4.4 cxservices: 1.2 cycler: 0.11.0 Cython: 0.29.26 debugpy: 1.6.0 decorator: 5.1.1 docutils: 0.17.1 entrypoints: 0.4 filelock: 3.4.2 fonttools: 4.33.3 funcparserlib: 1.0.0 grako: 3.16.5 h5py: 3.6.0 html2text: 2020.1.16 idna: 3.3 ihm: 0.27 imagecodecs: 2021.11.20 imagesize: 1.3.0 ipykernel: 6.6.1 ipython: 7.31.1 ipython-genutils: 0.2.0 jedi: 0.18.1 Jinja2: 3.0.3 jupyter-client: 7.1.0 jupyter-core: 4.10.0 kiwisolver: 1.4.2 line-profiler: 3.4.0 lxml: 4.7.1 lz4: 3.1.10 MarkupSafe: 2.1.1 matplotlib: 3.5.1 matplotlib-inline: 0.1.3 msgpack: 1.0.3 nest-asyncio: 1.5.5 netCDF4: 1.5.8 networkx: 2.6.3 numexpr: 2.8.1 numpy: 1.22.1 openvr: 1.16.802 packaging: 21.0 ParmEd: 3.4.3 parso: 0.8.3 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.0.1 pip: 21.3.1 pkginfo: 1.8.2 prompt-toolkit: 3.0.29 psutil: 5.9.0 ptyprocess: 0.7.0 pycollada: 0.7.2 pydicom: 2.2.2 Pygments: 2.11.2 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.8 PyQt6-commercial: 6.3.0 PyQt6-Qt6: 6.3.0 PyQt6-sip: 13.3.1 PyQt6-WebEngine-commercial: 6.3.0 PyQt6-WebEngine-Qt6: 6.3.0 python-dateutil: 2.8.2 pytz: 2022.1 pyzmq: 22.3.0 qtconsole: 5.3.0 QtPy: 2.1.0 RandomWords: 0.3.0 requests: 2.27.1 scipy: 1.7.3 setuptools: 59.8.0 sfftk-rw: 0.7.2 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 4.3.2 sphinx-autodoc-typehints: 1.15.2 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-community: 1.0.0 tables: 3.7.0 tifffile: 2021.11.2 tinyarray: 1.2.4 tornado: 6.1 traitlets: 5.1.1 urllib3: 1.26.9 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.37.1 wheel-filename: 1.3.0 }}} " defect closed normal UI can't reproduce Tom Goddard all ChimeraX