id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 7103 Volume Viewer after session restore: wrapped C/C++ object of type QScrollArea has been deleted jihmailed@… Tom Goddard "{{{ The following bug report has been submitted: Platform: Windows-10-10.0.22000 ChimeraX Version: 1.4 (2022-06-03 23:39:42 UTC) Description Opening up any saved ChimeraX session causes this error dialog to occur. Session seems normal and unaffected. Happens with both sessions saved from ChimeraX 1.3 and new sessions created in ChimeraX 1.4. Also not sure if this makes a difference, my OS is Windows 11 Home (OS build 22000.739), not what the report bug dialog detected in the box below. Log: UCSF ChimeraX version: 1.4 (2022-06-03) © 2016-2022 Regents of the University of California. All rights reserved. > open > D:\\\Zhou_Lab\\\Projects\\\HCMV_Tegument\\\Figures\\\Figure_3\\\UL77_interactions_cleft.cxs Log from Wed Jun 15 14:27:37 2022UCSF ChimeraX version: 1.4 (2022-06-03) © 2016-2022 Regents of the University of California. All rights reserved. > open > D:\\\Zhou_Lab\\\Projects\\\HCMV_Tegument\\\Figures\\\Figure_3\\\UL77_interactions_cleft.cxs Log from Wed Jun 8 13:59:03 2022UCSF ChimeraX version: 1.3 (2021-12-08) © 2016-2021 Regents of the University of California. All rights reserved. > open > D:\\\Zhou_Lab\\\Projects\\\HCMV_Tegument\\\Figures\\\Figure_3\\\UL77_interactions_cleft.cxs Log from Wed Jun 8 13:51:01 2022UCSF ChimeraX version: 1.3 (2021-12-08) © 2016-2021 Regents of the University of California. All rights reserved. > open > D:\\\Zhou_Lab\\\Projects\\\HCMV_Tegument\\\Figures\\\Figure_3\\\UL77_interactions_1.cxs Log from Wed Jun 8 13:06:18 2022UCSF ChimeraX version: 1.3 (2021-12-08) © 2016-2021 Regents of the University of California. All rights reserved. > open > D:\\\Zhou_Lab\\\Projects\\\HCMV_Tegument\\\Figures\\\Figure_3\\\UL77_interactions_1.cxs Log from Tue Jun 7 03:36:45 2022UCSF ChimeraX version: 1.3 (2021-12-08) © 2016-2021 Regents of the University of California. All rights reserved. > open > D:\\\Zhou_Lab\\\Projects\\\HCMV_Tegument\\\Figures\\\Figure_3\\\UL77_interactions_1.cxs Log from Fri Jan 14 14:57:10 2022UCSF ChimeraX version: 1.2.5 (2021-05-24) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open > I:/Zhou_Lab/Projects/HCMV_Portal/Modeling/Virion_Type1/UL77_lower_FINAL_VT1_1.pdb > I:/Zhou_Lab/Projects/HCMV_Portal/Modeling/Virion_Type1/UL77_lower_FINAL_VT1_2.pdb > I:/Zhou_Lab/Projects/HCMV_Portal/Modeling/Virion_Type1/UL77_lower_FINAL_VT1_3.pdb > I:/Zhou_Lab/Projects/HCMV_Portal/Modeling/Virion_Type1/UL77_lower_FINAL_VT1_4.pdb > I:/Zhou_Lab/Projects/HCMV_Portal/Modeling/Virion_Type1/UL77_lower_FINAL_VT1_5.pdb > I:/Zhou_Lab/Projects/HCMV_Portal/Modeling/Virion_Type1/UL77_lower_pent_combined.pdb > I:/Zhou_Lab/Projects/HCMV_Portal/Modeling/Virion_Type1/UL77_upper_FINAL_VT1_1.pdb > I:/Zhou_Lab/Projects/HCMV_Portal/Modeling/Virion_Type1/UL77_upper_FINAL_VT1_2.pdb > I:/Zhou_Lab/Projects/HCMV_Portal/Modeling/Virion_Type1/UL77_upper_FINAL_VT1_3.pdb > I:/Zhou_Lab/Projects/HCMV_Portal/Modeling/Virion_Type1/UL77_upper_FINAL_VT1_4.pdb > I:/Zhou_Lab/Projects/HCMV_Portal/Modeling/Virion_Type1/UL77_upper_FINAL_VT1_5.pdb > I:/Zhou_Lab/Projects/HCMV_Portal/Modeling/Virion_Type1/UL77_upper_pent_combined.pdb Summary of feedback from opening I:/Zhou_Lab/Projects/HCMV_Portal/Modeling/Virion_Type1/UL77_lower_FINAL_VT1_1.pdb --- warning | Ignored bad PDB record found on line 4038 END Chain information for UL77_lower_FINAL_VT1_1.pdb #1 --- Chain | Description A | No description available Chain information for UL77_lower_FINAL_VT1_2.pdb #2 --- Chain | Description A | No description available Chain information for UL77_lower_FINAL_VT1_3.pdb #3 --- Chain | Description A | No description available Chain information for UL77_lower_FINAL_VT1_4.pdb #4 --- Chain | Description A | No description available Chain information for UL77_lower_FINAL_VT1_5.pdb #5 --- Chain | Description A | No description available Chain information for UL77_lower_pent_combined.pdb #6 --- Chain | Description A B C D E | No description available Chain information for UL77_upper_FINAL_VT1_1.pdb #7 --- Chain | Description A | No description available Chain information for UL77_upper_FINAL_VT1_2.pdb #8 --- Chain | Description A | No description available Chain information for UL77_upper_FINAL_VT1_3.pdb #9 --- Chain | Description A | No description available Chain information for UL77_upper_FINAL_VT1_4.pdb #10 --- Chain | Description A | No description available Chain information for UL77_upper_FINAL_VT1_5.pdb #11 --- Chain | Description A | No description available Chain information for UL77_upper_pent_combined.pdb #12 --- Chain | Description A B C D E | No description available Drag select of 4925 residues, 90 pseudobonds, 39775 atoms > hide sel atoms > show sel cartoons > select clear > lighting soft > lighting simple > lighting soft > lighting full > lighting soft > lighting simple > hide #!1 models > show #!1 models > dssp > hide #!1 models > show #!1 models > hide #!2-12 target m > hide #!1 models > show #!1 models > show #!2 models > show #!1-12 target m > hide #!12 models > hide #!6 models > lighting soft > lighting simple > lighting soft > lighting simple > lighting soft > set bgColor white > select clear > select #11/A:313 7 atoms, 7 bonds, 1 residue, 1 model selected > select up 138 atoms, 139 bonds, 18 residues, 1 model selected > select up 3979 atoms, 4082 bonds, 493 residues, 1 model selected > select clear > select #11/A:317 8 atoms, 7 bonds, 1 residue, 1 model selected > select up 138 atoms, 139 bonds, 18 residues, 1 model selected > select up 3979 atoms, 4082 bonds, 493 residues, 1 model selected > color sel light sea green > select #7/A:258 7 atoms, 6 bonds, 1 residue, 1 model selected > select up 112 atoms, 111 bonds, 15 residues, 1 model selected > select up 3979 atoms, 4082 bonds, 493 residues, 1 model selected > color sel forest green > select clear > select clear > select #1/A:255 8 atoms, 7 bonds, 1 residue, 1 model selected > select up 112 atoms, 111 bonds, 15 residues, 1 model selected > select up 3976 atoms, 4081 bonds, 492 residues, 1 model selected > color sel #000055ff > color sel #0055ffff > select #10/A:616 6 atoms, 5 bonds, 1 residue, 1 model selected > select add #9/A:532 15 atoms, 13 bonds, 2 residues, 2 models selected > select add #8/A:618 23 atoms, 20 bonds, 3 residues, 3 models selected > select clear > hide #!2-5 target m > hide #!8-10 target m > select #7/A:202 9 atoms, 8 bonds, 1 residue, 1 model selected > select add #7/A:210 17 atoms, 15 bonds, 2 residues, 1 model selected > select up 100 atoms, 101 bonds, 12 residues, 1 model selected > ui tool show ""Side View"" > select add #7/A:211 105 atoms, 105 bonds, 13 residues, 1 model selected > select #7/A:206 7 atoms, 6 bonds, 1 residue, 1 model selected > select clear > select add #7/A:210 8 atoms, 7 bonds, 1 residue, 1 model selected > select add #7/A:208 19 atoms, 18 bonds, 2 residues, 1 model selected > select clear > select #7/A:206 7 atoms, 6 bonds, 1 residue, 1 model selected > select add #7/A:207 15 atoms, 13 bonds, 2 residues, 1 model selected > select add #7/A:208 26 atoms, 24 bonds, 3 residues, 1 model selected > select add #7/A:210 34 atoms, 31 bonds, 4 residues, 1 model selected > select add #7/A:209 43 atoms, 39 bonds, 5 residues, 1 model selected > select add #7/A:211 48 atoms, 43 bonds, 6 residues, 1 model selected > select add #7/A:212 54 atoms, 48 bonds, 7 residues, 1 model selected > select add #7/A:213 61 atoms, 54 bonds, 8 residues, 1 model selected > show sel atoms > style sel stick Changed 61 atom styles > color sel byhetero > select #11/A:563 6 atoms, 5 bonds, 1 residue, 1 model selected > select add #11/A:564 14 atoms, 12 bonds, 2 residues, 1 model selected > select add #11/A:532 23 atoms, 20 bonds, 3 residues, 1 model selected > select add #11/A:613 30 atoms, 26 bonds, 4 residues, 1 model selected > select add #11/A:224 41 atoms, 36 bonds, 5 residues, 1 model selected > select up 416 atoms, 423 bonds, 51 residues, 1 model selected > select subtract #11/A:525 408 atoms, 416 bonds, 50 residues, 1 model selected > select subtract #11/A:524 404 atoms, 413 bonds, 49 residues, 1 model selected > select subtract #11/A:526 399 atoms, 409 bonds, 48 residues, 1 model selected > select subtract #11/A:527 391 atoms, 402 bonds, 47 residues, 1 model selected > show sel atoms > hide sel atoms > select subtract #11/A:536 385 atoms, 397 bonds, 46 residues, 1 model selected > select subtract #11/A:537 381 atoms, 394 bonds, 45 residues, 1 model selected > select add #11/A:536 387 atoms, 399 bonds, 46 residues, 1 model selected > select subtract #11/A:538 373 atoms, 384 bonds, 45 residues, 1 model selected > select subtract #11/A:539 365 atoms, 377 bonds, 44 residues, 1 model selected > select subtract #11/A:540 358 atoms, 370 bonds, 43 residues, 1 model selected > select subtract #11/A:541 352 atoms, 365 bonds, 42 residues, 1 model selected > select subtract #11/A:542 341 atoms, 355 bonds, 41 residues, 1 model selected > select subtract #11/A:543 330 atoms, 345 bonds, 40 residues, 1 model selected > select subtract #11/A:544 321 atoms, 337 bonds, 39 residues, 1 model selected > select subtract #11/A:545 313 atoms, 330 bonds, 38 residues, 1 model selected > show sel atoms > hide sel atoms > select subtract #11/A:607 306 atoms, 323 bonds, 37 residues, 1 model selected > select subtract #11/A:609 296 atoms, 313 bonds, 36 residues, 1 model selected > select subtract #11/A:610 285 atoms, 303 bonds, 35 residues, 1 model selected > select subtract #11/A:608 274 atoms, 293 bonds, 34 residues, 1 model selected > select subtract #11/A:611 267 atoms, 287 bonds, 33 residues, 1 model selected > select subtract #11/A:612 261 atoms, 282 bonds, 32 residues, 1 model selected > show sel atoms > color sel byhetero > hide sel atoms > select subtract #11/A:536 255 atoms, 277 bonds, 31 residues, 1 model selected > show sel atoms > select subtract #11/A:533 249 atoms, 272 bonds, 30 residues, 1 model selected > select subtract #11/A:532 240 atoms, 264 bonds, 29 residues, 1 model selected > select subtract #11/A:529 235 atoms, 260 bonds, 28 residues, 1 model selected > select subtract #11/A:528 227 atoms, 253 bonds, 27 residues, 1 model selected > hide sel atoms > show sel atoms > select add #11/A:533 233 atoms, 258 bonds, 28 residues, 1 model selected > select add #11/A:529 238 atoms, 262 bonds, 29 residues, 1 model selected > select add #11/A:528 246 atoms, 269 bonds, 30 residues, 1 model selected > hide sel atoms > select add #11/A:532 255 atoms, 277 bonds, 31 residues, 1 model selected > hide sel atoms > select subtract #11/A:532 246 atoms, 269 bonds, 30 residues, 1 model selected > select subtract #11/A:533 240 atoms, 264 bonds, 29 residues, 1 model selected > select subtract #11/A:529 235 atoms, 260 bonds, 28 residues, 1 model selected > show sel atoms > hide sel atoms > select subtract #11/A:528 227 atoms, 253 bonds, 27 residues, 1 model selected > show sel atoms > hide sel atoms > show sel atoms > hide sel atoms > select subtract #11/A:619 216 atoms, 242 bonds, 26 residues, 1 model selected > select subtract #11/A:222 204 atoms, 230 bonds, 25 residues, 1 model selected > show sel atoms > select clear Drag select of 81 residues > hide sel target a > hide sel cartoons > show sel cartoons > select clear > select #11/A:613 7 atoms, 6 bonds, 1 residue, 1 model selected > select add #7/A:251 16 atoms, 14 bonds, 2 residues, 2 models selected > select up 214 atoms, 215 bonds, 28 residues, 2 models selected > select up 7958 atoms, 8164 bonds, 986 residues, 2 models selected > style sel sphere Changed 7958 atom styles > style sel ball Changed 7958 atom styles > style sel stick Changed 7958 atom styles > color sel bychain > undo > hide sel atoms > show sel atoms > hide sel atoms > show sel atoms > hide sel atoms > undo > undo > undo > undo > select clear > select #7/A:208 11 atoms, 11 bonds, 1 residue, 1 model selected > select add #7/A:209 20 atoms, 19 bonds, 2 residues, 1 model selected > select add #7/A:210 28 atoms, 26 bonds, 3 residues, 1 model selected > select add #7/A:211 33 atoms, 30 bonds, 4 residues, 1 model selected > select add #7/A:212 39 atoms, 35 bonds, 5 residues, 1 model selected > select add #7/A:213 46 atoms, 41 bonds, 6 residues, 1 model selected > select add #7/A:214 60 atoms, 56 bonds, 7 residues, 1 model selected > show sel atoms > select #7/A:206 7 atoms, 6 bonds, 1 residue, 1 model selected > show sel cartoons > show sel atoms > select #7/A:208 11 atoms, 11 bonds, 1 residue, 1 model selected > hide sel atoms > show sel atoms > select clear Drag select of 1 residues > select clear > select #11/A:227 11 atoms, 10 bonds, 1 residue, 1 model selected > select add #11/A:224 22 atoms, 20 bonds, 2 residues, 1 model selected > select add #11/A:220 30 atoms, 27 bonds, 3 residues, 1 model selected > select add #11/A:221 44 atoms, 42 bonds, 4 residues, 1 model selected > select add #11/A:228 48 atoms, 45 bonds, 5 residues, 1 model selected > select add #11/A:225 56 atoms, 52 bonds, 6 residues, 1 model selected > select add #11/A:223 68 atoms, 64 bonds, 7 residues, 1 model selected > show sel atoms > hide #!1 models > select #7/A:205 8 atoms, 7 bonds, 1 residue, 1 model selected > show sel atoms > hide sel atoms > select #7/A:215 7 atoms, 6 bonds, 1 residue, 1 model selected > show sel atoms > color sel byhetero > select clear > select #7/A:214 14 atoms, 15 bonds, 1 residue, 1 model selected > color sel byhetero > select clear > select #7/A:207 8 atoms, 7 bonds, 1 residue, 1 model selected > select #11/A:617 6 atoms, 5 bonds, 1 residue, 1 model selected > select up 102 atoms, 104 bonds, 13 residues, 1 model selected > select up 3979 atoms, 4082 bonds, 493 residues, 1 model selected > show sel atoms > select add #7/A:464 3987 atoms, 4089 bonds, 494 residues, 2 models selected > select up 4020 atoms, 4122 bonds, 499 residues, 2 models selected > select up 7958 atoms, 8164 bonds, 986 residues, 2 models selected > select clear > select #7/A:464 8 atoms, 7 bonds, 1 residue, 1 model selected > select add #11/A:616 14 atoms, 12 bonds, 2 residues, 2 models selected > select up 143 atoms, 144 bonds, 19 residues, 2 models selected > select up 7958 atoms, 8164 bonds, 986 residues, 2 models selected > show sel atoms > color sel byhetero > hide sel atoms > select clear > select #7/A:206 7 atoms, 6 bonds, 1 residue, 1 model selected > select add #7/A:210 15 atoms, 13 bonds, 2 residues, 1 model selected > select add #7/A:209 24 atoms, 21 bonds, 3 residues, 1 model selected > select add #7/A:211 29 atoms, 25 bonds, 4 residues, 1 model selected > select add #7/A:212 35 atoms, 30 bonds, 5 residues, 1 model selected > select add #7/A:213 42 atoms, 36 bonds, 6 residues, 1 model selected > select add #7/A:214 56 atoms, 51 bonds, 7 residues, 1 model selected > select add #7/A:215 63 atoms, 57 bonds, 8 residues, 1 model selected > select add #11/A:617 69 atoms, 62 bonds, 9 residues, 2 models selected > select add #11/A:220 77 atoms, 69 bonds, 10 residues, 2 models selected > select add #11/A:221 91 atoms, 84 bonds, 11 residues, 2 models selected > select add #11/A:224 102 atoms, 94 bonds, 12 residues, 2 models selected > select add #11/A:223 114 atoms, 106 bonds, 13 residues, 2 models selected > select subtract #11/A:223 102 atoms, 94 bonds, 12 residues, 2 models selected > select add #11/A:225 110 atoms, 101 bonds, 13 residues, 2 models selected > select add #11/A:227 121 atoms, 111 bonds, 14 residues, 2 models selected > select add #11/A:228 125 atoms, 114 bonds, 15 residues, 2 models selected > select add #11/A:231 132 atoms, 120 bonds, 16 residues, 2 models selected > show sel atoms > select clear > select #11/A:564 8 atoms, 7 bonds, 1 residue, 1 model selected > select add #11/A:563 14 atoms, 12 bonds, 2 residues, 1 model selected > select add #11/A:562 23 atoms, 20 bonds, 3 residues, 1 model selected > show sel atoms > select #7/A:215 7 atoms, 6 bonds, 1 residue, 1 model selected > hide sel atoms > select #11/A:245 8 atoms, 7 bonds, 1 residue, 1 model selected > select add #11/A:246 16 atoms, 14 bonds, 2 residues, 1 model selected > select add #11/A:247 27 atoms, 25 bonds, 3 residues, 1 model selected > show sel atoms > select #11/A:223 12 atoms, 12 bonds, 1 residue, 1 model selected > show sel atoms > select #11/A:247 11 atoms, 11 bonds, 1 residue, 1 model selected > select add #11/A:246 19 atoms, 18 bonds, 2 residues, 1 model selected > select add #11/A:245 27 atoms, 25 bonds, 3 residues, 1 model selected > hide sel atoms > select clear > select #11/A:230 12 atoms, 12 bonds, 1 residue, 1 model selected > show sel atoms > hide sel atoms > select #7/A:208 11 atoms, 11 bonds, 1 residue, 1 model selected > show sel atoms > hide sel atoms > show sel atoms > select #11/A:617 6 atoms, 5 bonds, 1 residue, 1 model selected > hide sel cartoons > show sel cartoons > hide sel atoms > select add #11/A:614 14 atoms, 12 bonds, 2 residues, 1 model selected > select add #11/A:613 21 atoms, 18 bonds, 3 residues, 1 model selected > show sel atoms > hide sel atoms > select clear > select #11/A:535 11 atoms, 10 bonds, 1 residue, 1 model selected > select add #7/A:470 16 atoms, 14 bonds, 2 residues, 2 models selected > select add #11/A:536 22 atoms, 19 bonds, 3 residues, 2 models selected > select add #7/A:469 30 atoms, 26 bonds, 4 residues, 2 models selected > show sel atoms > hide sel atoms > show sel atoms > select #7/A:469 8 atoms, 7 bonds, 1 residue, 1 model selected > select clear > select #7/A:469 8 atoms, 7 bonds, 1 residue, 1 model selected > hide sel atoms > select #11/A:536 6 atoms, 5 bonds, 1 residue, 1 model selected > hide sel atoms > view name close1 > view list Named views: close1 > view close1 > select #11/A:563 6 atoms, 5 bonds, 1 residue, 1 model selected > select #11/A:562 9 atoms, 8 bonds, 1 residue, 1 model selected > hide sel atoms > select #7/A:467 4 atoms, 3 bonds, 1 residue, 1 model selected > select add #7/A:466 12 atoms, 10 bonds, 2 residues, 1 model selected > show sel atoms > select #7/A:470 5 atoms, 4 bonds, 1 residue, 1 model selected > hide sel atoms > select #7/A:469 8 atoms, 7 bonds, 1 residue, 1 model selected > show sel atoms > view list Named views: close1 > view close1 > hide sel atoms > select clear > select #7/A:466 8 atoms, 7 bonds, 1 residue, 1 model selected > hide sel atoms > select #7/A:206 7 atoms, 6 bonds, 1 residue, 1 model selected > hide sel atoms > select #7/A:211 5 atoms, 4 bonds, 1 residue, 1 model selected > hide sel atoms > show sel atoms > view close1 > view close1 > view close1 > select clear > select #7/A:206 7 atoms, 6 bonds, 1 residue, 1 model selected > select add #7/A:205 15 atoms, 13 bonds, 2 residues, 1 model selected > show sel atoms > select #7/A:202 9 atoms, 8 bonds, 1 residue, 1 model selected > select add #11/A:561 15 atoms, 13 bonds, 2 residues, 2 models selected > show sel cartoons > show sel atoms > select clear > select #11/A:561 6 atoms, 5 bonds, 1 residue, 1 model selected > hide sel atoms > select #11/A:562 9 atoms, 8 bonds, 1 residue, 1 model selected > show sel atoms > view list Named views: close1 > view close1 > view close1 > view close1 > save > I:/Zhou_Lab/Projects/HCMV_Portal/Figures/Figure_3/UL77_interactions_1.cxs ——— End of log from Fri Jan 14 14:57:10 2022 ——— opened ChimeraX session > ui tool show ""Side View"" > select clear > open > D:/Zhou_Lab/Projects/HCMV_Tegument/Modeling/Virion_Type1/AsymTEG_VT1_1.pdb Summary of feedback from opening D:/Zhou_Lab/Projects/HCMV_Tegument/Modeling/Virion_Type1/AsymTEG_VT1_1.pdb --- warnings | Ignored bad PDB record found on line 541 METHOD ROSETTA provides both ab initio and Ignored bad PDB record found on line 542 METHOD comparative models of protein domains. Ignored bad PDB record found on line 543 METHOD Comparative models are built from structures Ignored bad PDB record found on line 544 METHOD detected and aligned by HHSEARCH, SPARKS, and Ignored bad PDB record found on line 545 METHOD Raptor. Loop regions are assembled from fragments and 5 messages similar to the above omitted Chain information for AsymTEG_VT1_1.pdb #13 --- Chain | Description A | No description available B | No description available C | No description available D | No description available E | No description available F | No description available G | No description available > open > D:/Zhou_Lab/Projects/HCMV_Tegument/Modeling/Virion_Type1/AsymTEG_VT1_5.pdb Summary of feedback from opening D:/Zhou_Lab/Projects/HCMV_Tegument/Modeling/Virion_Type1/AsymTEG_VT1_5.pdb --- warnings | Ignored bad PDB record found on line 541 METHOD ROSETTA provides both ab initio and Ignored bad PDB record found on line 542 METHOD comparative models of protein domains. Ignored bad PDB record found on line 543 METHOD Comparative models are built from structures Ignored bad PDB record found on line 544 METHOD detected and aligned by HHSEARCH, SPARKS, and Ignored bad PDB record found on line 545 METHOD Raptor. Loop regions are assembled from fragments and 5 messages similar to the above omitted Chain information for AsymTEG_VT1_5.pdb #14 --- Chain | Description A | No description available B | No description available C | No description available D | No description available E | No description available F | No description available G | No description available > hide #!7,11,13-14 atoms > show #!7,11,13-14 cartoons > hide #!7 models > hide #!11 models > select clear Drag select of 86 residues > select add #13/F:567 724 atoms, 4 bonds, 87 residues, 2 models selected > select up 1411 atoms, 1448 bonds, 175 residues, 2 models selected > select up 11778 atoms, 12083 bonds, 1451 residues, 2 models selected > select ~sel 130270 atoms, 133549 bonds, 123 pseudobonds, 16107 residues, 28 models selected > delete atoms (#!13-14 & sel) > delete bonds (#!13-14 & sel) > select clear > color #13/E crimson > select clear > select #13/F:236 9 atoms, 8 bonds, 1 residue, 1 model selected > select up 71 atoms, 74 bonds, 7 residues, 1 model selected > select up 4000 atoms, 4105 bonds, 495 residues, 1 model selected > hide sel cartoons > show sel cartoons > select clear > view list Named views: close1 > view close1 [Repeated 3 time(s)] > select #14/E:224 11 atoms, 10 bonds, 1 residue, 1 model selected > select add #14/E:617 17 atoms, 15 bonds, 2 residues, 1 model selected > select add #13/E:209 26 atoms, 23 bonds, 3 residues, 2 models selected > select up 318 atoms, 325 bonds, 37 residues, 2 models selected > select add #13/E:213 325 atoms, 331 bonds, 38 residues, 2 models selected > select up 389 atoms, 400 bonds, 46 residues, 2 models selected > show sel atoms > style sel stick Changed 389 atom styles > hide #!13 models > hide #!14 models > select clear > show #!7 models > show #!11 models > select #7/A:212 6 atoms, 5 bonds, 1 residue, 1 model selected > select add #11/A:223 18 atoms, 17 bonds, 2 residues, 2 models selected > select up 187 atoms, 194 bonds, 21 residues, 2 models selected > show sel atoms > show #!13 models > hide #!13 models > show #!14 models > hide #!14 models > select clear > hide #!7 models > hide #!11 models > show #!14 models > show #!13 models > select #14/E:564 8 atoms, 7 bonds, 1 residue, 1 model selected > select up 79 atoms, 80 bonds, 10 residues, 1 model selected > show sel atoms > style sel stick Changed 79 atom styles > view list Named views: close1 > view close1 > hide sel atoms > select clear > hide #!13-14 atoms > view close1 > select clear > select #13-14/E-F:1-150 2125 atoms, 2154 bonds, 1 pseudobond, 256 residues, 3 models selected > hide sel atoms > hide sel cartoons > select clear > select #13-14/E-F:1-150 2125 atoms, 2154 bonds, 1 pseudobond, 256 residues, 3 models selected > show sel cartoons > cofr frontCenter [Repeated 1 time(s)] > select clear [Repeated 1 time(s)] > select #13/F:212 6 atoms, 5 bonds, 1 residue, 1 model selected > select clear > select #13/F:212 6 atoms, 5 bonds, 1 residue, 1 model selected > select add #14/E:360 10 atoms, 8 bonds, 2 residues, 2 models selected > select add #14/E:342 16 atoms, 13 bonds, 3 residues, 2 models selected > select add #14/E:384 20 atoms, 16 bonds, 4 residues, 2 models selected > select add #13/F:209 29 atoms, 24 bonds, 5 residues, 2 models selected > select up 536 atoms, 554 bonds, 64 residues, 2 models selected > show sel atoms > style sel stick Changed 536 atom styles > hide sel atoms > select clear > select #13-14/E-F:1-150 2125 atoms, 2154 bonds, 1 pseudobond, 256 residues, 3 models selected > hide sel cartoons > select clear > cofr frontCenter > view name far1 > view list Named views: close1, far1 > view close1 > view far1 [Repeated 12 time(s)] > view name far2 > view list Named views: close1, far1, far2 > view far1 > view far2 > view far1 > view far2 > select #13-14/E-F:1-150 2125 atoms, 2154 bonds, 1 pseudobond, 256 residues, 3 models selected > show sel cartoons > hide sel cartoons > show sel cartoons > set bgColor black > set bgColor white > view list Named views: close1, far1, far2 > view far2 > view far1 > view far2 > view far1 > view far2 > view far1 > view far2 > select clear > view far2 > color #13/F pink > color #14/E steel blue > color #14/E #d5e68d > color #14/E #8fe2c1 > color #13/F #d5e68d > color #13/F pink > color #13/F #d5e68d > select #13/F:612 6 atoms, 5 bonds, 1 residue, 1 model selected > ui tool show ""Selection Inspector"" > color #13/E #d5e68d > select #13/E:528 8 atoms, 7 bonds, 1 residue, 1 model selected > ui tool show ""Selection Inspector"" > color sel #737c4c atoms > color #13/E #737c4c > select clear > color #13/F pink > color #13/E crimson > color #13/F pink > color #14/E #558672 > color #14/E slate blue > color #14/E #8fe2c1 > color #14/E turquoise > view list Named views: close1, far1, far2 > view far2 > view far1 > view far2 > view far1 > view far2 > color #14/E #8fe2c1 > view close1 > view far2 > color #14/E slate blue > view close1 > color #13/E:208-210,251-252 gold > color #13/E:208-210,251-252,464-469 gold > select #14/E:531 7 atoms, 6 bonds, 1 residue, 1 model selected > select add #14/E:535 18 atoms, 16 bonds, 2 residues, 1 model selected > select add #14/E:609 28 atoms, 26 bonds, 3 residues, 1 model selected > select add #14/E:617 34 atoms, 31 bonds, 4 residues, 1 model selected > select add #14/E:613 41 atoms, 37 bonds, 5 residues, 1 model selected > select add #14/E:220 49 atoms, 44 bonds, 6 residues, 1 model selected > select add #14/E:224 60 atoms, 54 bonds, 7 residues, 1 model selected > select add #14/E:227 71 atoms, 64 bonds, 8 residues, 1 model selected > select add #14/E:228 75 atoms, 67 bonds, 9 residues, 1 model selected > color sel #8fe2c1 > select clear > select #14/E:609 10 atoms, 10 bonds, 1 residue, 1 model selected > select add #14/E:220 18 atoms, 17 bonds, 2 residues, 1 model selected > select add #14/E:535 29 atoms, 27 bonds, 3 residues, 1 model selected > select up 310 atoms, 316 bonds, 38 residues, 1 model selected > color sel #8fe2c1 > select clear > undo > show sel atoms > style sel stick Changed 310 atom styles > color #13/E:208-210,251-252,464-469 gold > select #13/E:208-210,251-252,464-469 74 atoms, 72 bonds, 9 residues, 1 model selected > show sel atoms > style sel stick Changed 74 atom styles > select clear > hide #!14 models > hide #!13 models > show #!11 models > show #!7 models > hide #!11 models > hide #!7 models > show #!13 models > show #!14 models > view list Named views: close1, far1, far2 > view far2 > color #14/E slate blue > hide #!13-14 atoms > color #13/E crimson > color > #14/E:610,614,618,221,224,225,227,228,231,232,527,530,531,532,534-536,562-567 > #8fe2c1 > color #13/E:251,252,205,206,209,210,466,469 orange > color #13/E:251,252,205,206,209,210,466,469 #d5e68d > view close1 > view far2 > select #13/E:251,252,205,206,209,210,466,469 58 atoms, 54 bonds, 7 residues, 1 model selected > style sel sphere Changed 58 atom styles > show sel atoms > select > #14/E:610,614,618,221,224,225,227,228,231,232,527,530,531,532,534-536,562-567 188 atoms, 180 bonds, 23 residues, 1 model selected > show sel atoms > style sel sphere Changed 188 atom styles > select clear > view far2 > select > #14/E:610,614,618,221,224,225,227,228,231,232,527,530,531,532,534-536,562-567 188 atoms, 180 bonds, 23 residues, 1 model selected > hide sel atoms > hide sel cartoons > show sel cartoons > style sel stick Changed 188 atom styles > hide sel cartoons > style sel stick Changed 188 atom styles > show sel atoms > hide sel atoms > show sel cartoons > style sel stick Changed 188 atom styles > hide sel cartoons > style sel stick Changed 188 atom styles > show sel cartoons > show sel atoms > hide sel cartoons > hide sel atoms > show sel atoms > hide sel atoms > show sel cartoons > show sel atoms > style sel sphere Changed 188 atom styles > hide sel atoms Drag select of 37 atoms, 248 residues, 2 pseudobonds > hide sel atoms > select clear > view list Named views: close1, far1, far2 > view close1 > view far2 > color #14/E #8fe2c1 > select clear > color #13/E crimson > color #14/E slate blue > save C:\Users\jihma\Desktop\image5.png supersample 3 > hide #!14 models > show #!14 models > hide #!13 models > show #!13 models > select #13/E:511 5 atoms, 4 bonds, 1 residue, 1 model selected > select up 53 atoms, 56 bonds, 6 residues, 1 model selected > select up 3889 atoms, 3989 bonds, 478 residues, 1 model selected > hide sel cartoons > save C:\Users\jihma\Desktop\image6.png supersample 3 > show sel cartoons > select clear > view list Named views: close1, far1, far2 > view far2 > select #13/E:181 7 atoms, 7 bonds, 1 residue, 1 model selected > select up 209 atoms, 214 bonds, 25 residues, 1 model selected > select up 3889 atoms, 3989 bonds, 478 residues, 1 model selected > hide sel cartoons > save C:\Users\jihma\Desktop\image6.png supersample 3 > color #14/E green > color #14/E forest green > color #14/E #8fe2c1 > select clear > save C:\Users\jihma\Desktop\image10.png supersample 3 > view far2 > show #!13-14 cartoons > select clear > save C:\Users\jihma\Desktop\image11.png supersample 3 > preset cartoons/nucleotides cylinders/stubs Changed 50629 atom styles Preset expands to these ChimeraX commands: show nucleic hide protein|solvent|H surf hide style (protein|nucleic|solvent) & @@draw_mode=0 stick cartoon cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20 cartoon style ~(nucleic|strand) x round cartoon style (nucleic|strand) x rect cartoon style protein modeh tube rad 2 sides 24 thick 0.6 cartoon style nucleic x round width 1.6 thick 1.6 nucleotides stubs > preset cartoons/nucleotides ribbons/slabs Changed 0 atom styles Preset expands to these ChimeraX commands: show nucleic hide protein|solvent|H surf hide style (protein|nucleic|solvent) & @@draw_mode=0 stick cartoon cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20 cartoon style ~(nucleic|strand) x round cartoon style (nucleic|strand) x rect nucleotides tube/slab shape box > preset cartoons/nucleotides cylinders/stubs Changed 0 atom styles Preset expands to these ChimeraX commands: show nucleic hide protein|solvent|H surf hide style (protein|nucleic|solvent) & @@draw_mode=0 stick cartoon cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20 cartoon style ~(nucleic|strand) x round cartoon style (nucleic|strand) x rect cartoon style protein modeh tube rad 2 sides 24 thick 0.6 cartoon style nucleic x round width 1.6 thick 1.6 nucleotides stubs > preset cartoons/nucleotides licorice/ovals Changed 0 atom styles Preset expands to these ChimeraX commands: show nucleic hide protein|solvent|H surf hide style (protein|nucleic|solvent) & @@draw_mode=0 stick cartoon cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20 cartoon style ~(nucleic|strand) x round cartoon style (nucleic|strand) x rect cartoon style protein modeh default arrows f x round width 1 thick 1 cartoon style nucleic x round width 1.6 thick 1.6 nucleotides tube/slab shape ellipsoid > preset cartoons/nucleotides ribbons/slabs Changed 0 atom styles Preset expands to these ChimeraX commands: show nucleic hide protein|solvent|H surf hide style (protein|nucleic|solvent) & @@draw_mode=0 stick cartoon cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20 cartoon style ~(nucleic|strand) x round cartoon style (nucleic|strand) x rect nucleotides tube/slab shape box > view list Named views: close1, far1, far2 > view far1 > view far2 > view close1 > view far2 > save > D:/Zhou_Lab/Projects/HCMV_Tegument/Figures/Figure_3/UL77_interactions_1.cxs ——— End of log from Tue Jun 7 03:36:45 2022 ——— opened ChimeraX session > close #13 > open > D:/Zhou_Lab/Projects/HCMV_Tegument/Modeling/Virion_Type1/AsymTEG_VT1_1.pdb Summary of feedback from opening D:/Zhou_Lab/Projects/HCMV_Tegument/Modeling/Virion_Type1/AsymTEG_VT1_1.pdb --- warnings | Ignored bad PDB record found on line 541 METHOD ROSETTA provides both ab initio and Ignored bad PDB record found on line 542 METHOD comparative models of protein domains. Ignored bad PDB record found on line 543 METHOD Comparative models are built from structures Ignored bad PDB record found on line 544 METHOD detected and aligned by HHSEARCH, SPARKS, and Ignored bad PDB record found on line 545 METHOD Raptor. Loop regions are assembled from fragments and 5 messages similar to the above omitted Chain information for AsymTEG_VT1_1.pdb #13 --- Chain | Description A | No description available B | No description available C | No description available D | No description available E | No description available F | No description available G | No description available > hide #!14 models > hide #!13 models > show #!13 models > select #13/E,F 7915 atoms, 8120 bonds, 11 pseudobonds, 977 residues, 2 models selected > select ~sel 106799 atoms, 109526 bonds, 110 pseudobonds, 13209 residues, 28 models selected > delete atoms (#!13 & sel) > delete bonds (#!13 & sel) > hide #!13 atoms > show #!13 cartoons > color #13/E crimson > color #13/F pink > show #!14 models > select clear [Repeated 1 time(s)] > preset cartoons/nucleotides cylinders/stubs Changed 7915 atom styles Preset expands to these ChimeraX commands: show nucleic hide protein|solvent|H surf hide style (protein|nucleic|solvent) & @@draw_mode=0 stick cartoon cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20 cartoon style ~(nucleic|strand) x round cartoon style (nucleic|strand) x rect cartoon style protein modeh tube rad 2 sides 24 thick 0.6 cartoon style nucleic x round width 1.6 thick 1.6 nucleotides stubs > ui tool show ""Side View"" > view list Named views: close1, far1, far2 > view far1 > view far2 > view far1 > view far2 [Repeated 2 time(s)] > lighting simple > lighting full > lighting soft > lighting shadows true intensity 0.5 > lighting shadows false > lighting shadows true > lighting simple > lighting soft > view name far1 > save > D:/Zhou_Lab/Projects/HCMV_Tegument/Figures/Figure_3/UL77_interactions_1.cxs ——— End of log from Wed Jun 8 13:06:18 2022 ——— opened ChimeraX session > view list Named views: close1, far1, far2 > view close1 > preset cartoons/nucleotides ribbons/slabs Changed 0 atom styles Preset expands to these ChimeraX commands: show nucleic hide protein|solvent|H surf hide style (protein|nucleic|solvent) & @@draw_mode=0 stick cartoon cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20 cartoon style ~(nucleic|strand) x round cartoon style (nucleic|strand) x rect nucleotides tube/slab shape box > select #13/E:251,252,205,206,209,210,466,469 66 atoms, 61 bonds, 8 residues, 1 model selected > color sel lawn green > view close1 > show sel atoms > style sel ball Changed 66 atom styles > hide sel atoms > select clear > color #14/E:610,614,618,221,224,225,227,228,530,531,532,534-536,562-567 > select clear > select #14/E:610,614,618,221,224,225,227,228,530,531,532,534-536,562-567 164 atoms, 158 bonds, 20 residues, 1 model selected > color sel orange > select clear > color #14/E #8fe2c1 > color #13/E crimson > redo [Repeated 1 time(s)] > undo [Repeated 1 time(s)] > select #14/E:610,614,618,221,224,225,227,228,530,531,532,534-536,562-567 164 atoms, 158 bonds, 20 residues, 1 model selected > color #13/E crimson > hide sel atoms > select clear > color #14/E #8fe2c1 > select #14/E:610,614,618,221,224,225,227,228,530,531,532,534-536,562-567 164 atoms, 158 bonds, 20 residues, 1 model selected > show sel atoms > style sel ball Changed 164 atom styles > color sel byhetero > view close1 > hide sel atoms > show sel atoms > style sel sphere Changed 164 atom styles > undo > select up 467 atoms, 478 bonds, 58 residues, 1 model selected > select clear > select #14/E:610,614,618,221,224,225,227,228,530,531,532,534-536,562-567 164 atoms, 158 bonds, 20 residues, 1 model selected > select #13/E:251,252,205,206,209,210,466,469 66 atoms, 61 bonds, 8 residues, 1 model selected > select #14/E:610,614,618,221,224,225,227,228,530,531,532,534-536,562-567 164 atoms, 158 bonds, 20 residues, 1 model selected > select add #13/E:251,252,205,206,209,210,466,469 230 atoms, 219 bonds, 28 residues, 2 models selected > hide sel atoms > select clear > view close1 [Repeated 1 time(s)] > select #14/E:610,614,618,221,224,225,227,228,530,531,532,534-536,562-567 164 atoms, 158 bonds, 20 residues, 1 model selected > select add #13/E:251,252,205,206,209,210,466,469 230 atoms, 219 bonds, 28 residues, 2 models selected > show sel atoms > style sel stick Changed 230 atom styles > style sel sphere Changed 230 atom styles > style sel ball Changed 230 atom styles > style sel stick Changed 230 atom styles > color sel by hetero Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero', 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', or 'random' or a keyword > color sel byhetero > select clear > undo > style sel sphere Changed 230 atom styles > undo > style sel ball Changed 230 atom styles > select clear > ui tool show ""Side View"" > view list Named views: close1, far1, far2 > view name close2 > view list Named views: close1, close2, far1, far2 > view close1 > view close2 > view close1 > view close2 > view name close2 > view list Named views: close1, close2, far1, far2 > view close2 [Repeated 1 time(s)] > select #14/E:610,614,618,221,224,225,227,228,530,531,532,534-536,562-567 164 atoms, 158 bonds, 20 residues, 1 model selected > select add #13/E:251,252,205,206,209,210,466,469 230 atoms, 219 bonds, 28 residues, 2 models selected > color #14/E #8fe2c1 > color #13/E crimson > select #14/E:610,614,618,221,224,225,227,228,530,531,532,534-536,562-567 164 atoms, 158 bonds, 20 residues, 1 model selected > select add #13/E:251,252,205,206,209,210,466,469 230 atoms, 219 bonds, 28 residues, 2 models selected > style sel sphere Changed 230 atom styles > transparency 50 [Repeated 1 time(s)] > style sel ball Changed 230 atom styles > color #14/E:610,614,618,221,224,225,227,228,530,531,532,534-536,562-567 > orange > color #13/E:251,252,205,206,209,210,466,469 lawn green > hide sel atoms > show sel atoms > style sel stick Changed 230 atom styles > style sel sphere Changed 230 atom styles > style sel ball Changed 230 atom styles > color sel byhetero > select clear > undo [Repeated 2 time(s)] > select clear > save > D:/Zhou_Lab/Projects/HCMV_Tegument/Figures/Figure_3/UL77_interactions_cleft.cxs ——— End of log from Wed Jun 8 13:51:01 2022 ——— opened ChimeraX session > ui tool show ""Side View"" > view list Named views: close1, close2, far1, far2 > color #14/E:610,614,618,221,224,225,227,228,530,531,532,534-536,562-567 > #8fe2c1 > color #13/E:251,252,205,206,209,210,466,469 crimson > select #14/E:610,614,618,221,224,225,227,228,530,531,532,534-536,562-567 164 atoms, 158 bonds, 20 residues, 1 model selected > select add #13/E:251,252,205,206,209,210,466,469 230 atoms, 219 bonds, 28 residues, 2 models selected > style sel sphere Changed 230 atom styles > style sel ball Changed 230 atom styles > style sel sphere Changed 230 atom styles > select clear > view name close3 > view list Named views: close1, close2, close3, far1, far2 > save C:\Users\jihma\Desktop\image27.png supersample 3 > select #14/E:610,614,618,221,224,225,227,228,530,531,532,534-536,562-567 164 atoms, 158 bonds, 20 residues, 1 model selected > select add #13/E:251,252,205,206,209,210,466,469 230 atoms, 219 bonds, 28 residues, 2 models selected > style sel ball Changed 230 atom styles > select clear > undo [Repeated 2 time(s)] > color #14/E:610,614,618,221,224,225,227,228,530,531,532,534-536,562-567 > orange > color #13/E:251,252,205,206,209,210,466,469 lawn green > select clear > save C:\Users\jihma\Desktop\image28.png supersample 3 > select #14/E:610,614,618,221,224,225,227,228,530,531,532,534-536,562-567 164 atoms, 158 bonds, 20 residues, 1 model selected > select add #13/E:251,252,205,206,209,210,466,469 230 atoms, 219 bonds, 28 residues, 2 models selected > style sel ball Changed 230 atom styles > select clear > save C:\Users\jihma\Desktop\image29.png supersample 3 > save > D:/Zhou_Lab/Projects/HCMV_Tegument/Figures/Figure_3/UL77_interactions_cleft.cxs ——— End of log from Wed Jun 8 13:59:03 2022 ——— opened ChimeraX session Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.4\bin\lib\site- packages\chimerax\map\volume_viewer.py"", line 1530, in QTimer.singleShot(200, lambda f=f: f.setMinimumHeight(50)) RuntimeError: wrapped C/C++ object of type QScrollArea has been deleted RuntimeError: wrapped C/C++ object of type QScrollArea has been deleted File ""C:\Program Files\ChimeraX 1.4\bin\lib\site- packages\chimerax\map\volume_viewer.py"", line 1530, in QTimer.singleShot(200, lambda f=f: f.setMinimumHeight(50)) See log for complete Python traceback. > save > D:/Zhou_Lab/Projects/HCMV_Tegument/Figures/Figure_3/UL77_interactions_cleft.cxs ——— End of log from Wed Jun 15 14:27:37 2022 ——— opened ChimeraX session Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.4\bin\lib\site- packages\chimerax\map\volume_viewer.py"", line 1530, in QTimer.singleShot(200, lambda f=f: f.setMinimumHeight(50)) RuntimeError: wrapped C/C++ object of type QScrollArea has been deleted RuntimeError: wrapped C/C++ object of type QScrollArea has been deleted File ""C:\Program Files\ChimeraX 1.4\bin\lib\site- packages\chimerax\map\volume_viewer.py"", line 1530, in QTimer.singleShot(200, lambda f=f: f.setMinimumHeight(50)) See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 512.77 OpenGL renderer: NVIDIA GeForce RTX 3080 Laptop GPU/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Python: 3.9.11 Locale: en_US.cp1252 Qt version: PyQt6 6.3.0, Qt 6.3.0 Qt runtime version: 6.3.0 Qt platform: windows Manufacturer: LENOVO Model: 82N6 OS: Microsoft Windows 11 Home (Build 22000) Memory: 34,204,610,560 MaxProcessMemory: 137,438,953,344 CPU: 16 AMD Ryzen 9 5900HX with Radeon Graphics OSLanguage: en-US Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 Babel: 2.10.1 backcall: 0.2.0 blockdiag: 3.0.0 certifi: 2022.5.18.1 cftime: 1.6.0 charset-normalizer: 2.0.12 ChimeraX-AddCharge: 1.2.3 ChimeraX-AddH: 2.1.11 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2.1 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.4.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.39.1 ChimeraX-AtomicLibrary: 7.0 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.1 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.1 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.7 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.2 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.1 ChimeraX-CommandLine: 1.2.3 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.4 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.1 ChimeraX-DistMonitor: 1.1.5 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.2 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.1.2 ChimeraX-Help: 1.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0 ChimeraX-Label: 1.1.1 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 2.0.6 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.7 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.5.5 ChimeraX-ModelPanel: 1.3.2 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.2 ChimeraX-OpenCommand: 1.9 ChimeraX-PDB: 2.6.6 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.6 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.1 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.8 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.0.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.1 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.18.3 ChimeraX-uniprot: 2.2 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.1.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.1.0 ChimeraX-Zone: 1.0 colorama: 0.4.4 comtypes: 1.1.10 cxservices: 1.2 cycler: 0.11.0 Cython: 0.29.26 debugpy: 1.6.0 decorator: 5.1.1 docutils: 0.17.1 entrypoints: 0.4 filelock: 3.4.2 fonttools: 4.33.3 funcparserlib: 1.0.0 grako: 3.16.5 h5py: 3.7.0 html2text: 2020.1.16 idna: 3.3 ihm: 0.27 imagecodecs: 2021.11.20 imagesize: 1.3.0 ipykernel: 6.6.1 ipython: 7.31.1 ipython-genutils: 0.2.0 jedi: 0.18.1 Jinja2: 3.0.3 jupyter-client: 7.1.0 jupyter-core: 4.10.0 kiwisolver: 1.4.2 line-profiler: 3.4.0 lxml: 4.7.1 lz4: 3.1.10 MarkupSafe: 2.1.1 matplotlib: 3.5.1 matplotlib-inline: 0.1.3 msgpack: 1.0.3 nest-asyncio: 1.5.5 netCDF4: 1.5.8 networkx: 2.6.3 numexpr: 2.8.1 numpy: 1.22.1 openvr: 1.16.802 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pickleshare: 0.7.5 Pillow: 9.0.1 pip: 21.3.1 pkginfo: 1.8.2 prompt-toolkit: 3.0.29 psutil: 5.9.0 pycollada: 0.7.2 pydicom: 2.2.2 Pygments: 2.11.2 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 PyQt6-commercial: 6.3.0 PyQt6-Qt6: 6.3.0 PyQt6-sip: 13.3.1 PyQt6-WebEngine-commercial: 6.3.0 PyQt6-WebEngine-Qt6: 6.3.0 python-dateutil: 2.8.2 pytz: 2022.1 pywin32: 303 pyzmq: 23.1.0 qtconsole: 5.3.0 QtPy: 2.1.0 RandomWords: 0.3.0 requests: 2.27.1 scipy: 1.7.3 setuptools: 59.8.0 sfftk-rw: 0.7.2 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 4.3.2 sphinx-autodoc-typehints: 1.15.2 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-community: 1.0.0 tables: 3.7.0 tifffile: 2021.11.2 tinyarray: 1.2.4 tornado: 6.1 traitlets: 5.1.1 urllib3: 1.26.9 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.37.1 wheel-filename: 1.3.0 WMI: 1.5.1 }}} " defect closed normal Sessions fixed Greg Couch all ChimeraX