id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 7071 Capturing thumbnail image: Attempt to retrieve context when no valid context chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: Linux-5.10.102.1-microsoft-standard-WSL2-x86_64-with-glibc2.31 ChimeraX Version: 1.4rc202206032339 (2022-06-03 23:39:42 UTC) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 1.4rc202206032339 (2022-06-03) © 2016-2022 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open RS.pdb Chain information for RS.pdb #1 --- Chain | Description ? | No description available Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/usr/lib/ucsf-chimerax/lib/python3.9/site- packages/chimerax/core/filehistory.py"", line 73, in t.add_handler('frame drawn', lambda *args, s=self: s.capture_thumbnails_cb()) File ""/usr/lib/ucsf-chimerax/lib/python3.9/site- packages/chimerax/core/filehistory.py"", line 85, in capture_thumbnails_cb fs.capture_image(models, ses) File ""/usr/lib/ucsf-chimerax/lib/python3.9/site- packages/chimerax/core/filehistory.py"", line 173, in capture_image self.image = models_image(session, models, size) File ""/usr/lib/ucsf-chimerax/lib/python3.9/site- packages/chimerax/core/filehistory.py"", line 235, in models_image image = v.image(width, height, camera = c, drawings = models) File ""/usr/lib/ucsf-chimerax/lib/python3.9/site- packages/chimerax/graphics/view.py"", line 415, in image rgba = self.image_rgba(width=width, height=height, supersample=supersample, File ""/usr/lib/ucsf-chimerax/lib/python3.9/site- packages/chimerax/graphics/view.py"", line 465, in image_rgba self.draw(c, drawings, swap_buffers = False) File ""/usr/lib/ucsf-chimerax/lib/python3.9/site- packages/chimerax/graphics/view.py"", line 165, in draw self._draw_scene(camera, drawings) File ""/usr/lib/ucsf-chimerax/lib/python3.9/site- packages/chimerax/graphics/view.py"", line 235, in _draw_scene draw_opaque(r, opaque_drawings) File ""/usr/lib/ucsf-chimerax/lib/python3.9/site- packages/chimerax/graphics/drawing.py"", line 1526, in draw_opaque _draw_multiple(drawings, renderer, Drawing.OPAQUE_DRAW_PASS) File ""/usr/lib/ucsf-chimerax/lib/python3.9/site- packages/chimerax/graphics/drawing.py"", line 1539, in _draw_multiple d.draw(renderer, draw_pass) File ""/usr/lib/ucsf-chimerax/lib/python3.9/site- packages/chimerax/graphics/drawing.py"", line 752, in draw self.draw_self(renderer, draw_pass) File ""/usr/lib/ucsf-chimerax/lib/python3.9/site- packages/chimerax/graphics/drawing.py"", line 759, in draw_self self._draw_geometry(renderer, opaque_only = any_transp) File ""/usr/lib/ucsf-chimerax/lib/python3.9/site- packages/chimerax/graphics/drawing.py"", line 786, in _draw_geometry ds.activate_bindings(renderer) File ""/usr/lib/ucsf-chimerax/lib/python3.9/site- packages/chimerax/graphics/drawing.py"", line 1898, in activate_bindings self.update_buffers() File ""/usr/lib/ucsf-chimerax/lib/python3.9/site- packages/chimerax/graphics/drawing.py"", line 1888, in update_buffers bi.bind_shader_variable(b) File ""/usr/lib/ucsf-chimerax/lib/python3.9/site- packages/chimerax/graphics/opengl.py"", line 2514, in bind_shader_variable GL.glVertexAttribPointer(attr_id, ncomp, gtype, normalize, 0, None) File ""src/latebind.pyx"", line 51, in OpenGL_accelerate.latebind.Curry.__call__ File ""/usr/lib/ucsf-chimerax/lib/python3.9/site- packages/OpenGL/GL/VERSION/GL_2_0.py"", line 469, in glVertexAttribPointer contextdata.setValue( key, array ) File ""/usr/lib/ucsf-chimerax/lib/python3.9/site- packages/OpenGL/contextdata.py"", line 58, in setValue context = getContext( context ) File ""/usr/lib/ucsf-chimerax/lib/python3.9/site- packages/OpenGL/contextdata.py"", line 40, in getContext raise error.Error( OpenGL.error.Error: Attempt to retrieve context when no valid context Error processing trigger ""frame drawn"": OpenGL.error.Error: Attempt to retrieve context when no valid context File ""/usr/lib/ucsf-chimerax/lib/python3.9/site- packages/OpenGL/contextdata.py"", line 40, in getContext raise error.Error( See log for complete Python traceback. An error occurred in drawing the scene. Redrawing graphics is now stopped to avoid a continuous stream of error messages. To restart graphics use the command ""graphics restart"" after changing the settings that caused the error. Attempt to retrieve context when no valid context Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax/lib/python3.9/site- packages/chimerax/core/updateloop.py"", line 73, in draw_new_frame view.draw(check_for_changes = False) File ""/usr/lib/ucsf-chimerax/lib/python3.9/site- packages/chimerax/graphics/view.py"", line 165, in draw self._draw_scene(camera, drawings) File ""/usr/lib/ucsf-chimerax/lib/python3.9/site- packages/chimerax/graphics/view.py"", line 235, in _draw_scene draw_opaque(r, opaque_drawings) File ""/usr/lib/ucsf-chimerax/lib/python3.9/site- packages/chimerax/graphics/drawing.py"", line 1526, in draw_opaque _draw_multiple(drawings, renderer, Drawing.OPAQUE_DRAW_PASS) File ""/usr/lib/ucsf-chimerax/lib/python3.9/site- packages/chimerax/graphics/drawing.py"", line 1539, in _draw_multiple d.draw(renderer, draw_pass) File ""/usr/lib/ucsf-chimerax/lib/python3.9/site- packages/chimerax/graphics/drawing.py"", line 752, in draw self.draw_self(renderer, draw_pass) File ""/usr/lib/ucsf-chimerax/lib/python3.9/site- packages/chimerax/graphics/drawing.py"", line 759, in draw_self self._draw_geometry(renderer, opaque_only = any_transp) File ""/usr/lib/ucsf-chimerax/lib/python3.9/site- packages/chimerax/graphics/drawing.py"", line 786, in _draw_geometry ds.activate_bindings(renderer) File ""/usr/lib/ucsf-chimerax/lib/python3.9/site- packages/chimerax/graphics/drawing.py"", line 1898, in activate_bindings self.update_buffers() File ""/usr/lib/ucsf-chimerax/lib/python3.9/site- packages/chimerax/graphics/drawing.py"", line 1888, in update_buffers bi.bind_shader_variable(b) File ""/usr/lib/ucsf-chimerax/lib/python3.9/site- packages/chimerax/graphics/opengl.py"", line 2514, in bind_shader_variable GL.glVertexAttribPointer(attr_id, ncomp, gtype, normalize, 0, None) File ""src/latebind.pyx"", line 51, in OpenGL_accelerate.latebind.Curry.__call__ File ""/usr/lib/ucsf-chimerax/lib/python3.9/site- packages/OpenGL/GL/VERSION/GL_2_0.py"", line 469, in glVertexAttribPointer contextdata.setValue( key, array ) File ""/usr/lib/ucsf-chimerax/lib/python3.9/site- packages/OpenGL/contextdata.py"", line 58, in setValue context = getContext( context ) File ""/usr/lib/ucsf-chimerax/lib/python3.9/site- packages/OpenGL/contextdata.py"", line 40, in getContext raise error.Error( OpenGL.error.Error: Attempt to retrieve context when no valid context OpenGL version: 3.3 (Core Profile) Mesa 21.2.6 OpenGL renderer: D3D12 (NVIDIA GeForce GTX 1050 Ti) OpenGL vendor: Microsoft Corporation Python: 3.9.11 Locale: en_US.UTF-8 Qt version: PyQt6 6.3.0, Qt 6.3.0 Qt runtime version: 6.3.0 Qt platform: wayland XDG_SESSION_TYPE= DESKTOP_SESSION= XDG_SESSION_DESKTOP= XDG_CURRENT_DESKTOP= WAYLAND_DISPLAY=wayland-0 DISPLAY=172.25.240.1:0.0 Manufacturer: unknown Model: unknown OS: Ubuntu 20.04 focal Architecture: 64bit ELF Virtual Machine: wsl CPU: 8 Intel(R) Core(TM) i7-7700HQ CPU @ 2.80GHz Cache Size: 6144 KB Memory: total used free shared buff/cache available Mem: 7.7Gi 515Mi 6.1Gi 19Mi 1.1Gi 7.0Gi Swap: 2.0Gi 0B 2.0Gi Graphics: unknown Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 Babel: 2.10.1 backcall: 0.2.0 blockdiag: 3.0.0 certifi: 2022.5.18.1 cftime: 1.6.0 charset-normalizer: 2.0.12 ChimeraX-AddCharge: 1.2.3 ChimeraX-AddH: 2.1.11 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2.1 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.4.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.39.1 ChimeraX-AtomicLibrary: 7.0 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.1 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.1 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.7 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.2 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.1 ChimeraX-CommandLine: 1.2.3 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.4rc202206032339 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.1 ChimeraX-DistMonitor: 1.1.5 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.2 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.1.2 ChimeraX-Help: 1.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0 ChimeraX-Label: 1.1.1 ChimeraX-LinuxSupport: 1.0 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 2.0.6 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.7 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.5.5 ChimeraX-ModelPanel: 1.3.2 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.2 ChimeraX-OpenCommand: 1.9 ChimeraX-PDB: 2.6.6 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.6 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.1 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.8 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.0.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.1 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.18.3 ChimeraX-uniprot: 2.2 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.1.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.1.0 ChimeraX-Zone: 1.0 colorama: 0.4.4 cxservices: 1.2 cycler: 0.11.0 Cython: 0.29.26 debugpy: 1.6.0 decorator: 5.1.1 distro: 1.6.0 docutils: 0.17.1 entrypoints: 0.4 filelock: 3.4.2 fonttools: 4.33.3 funcparserlib: 1.0.0 grako: 3.16.5 h5py: 3.7.0 html2text: 2020.1.16 idna: 3.3 ihm: 0.27 imagecodecs: 2021.11.20 imagesize: 1.3.0 ipykernel: 6.6.1 ipython: 7.31.1 ipython-genutils: 0.2.0 jedi: 0.18.1 Jinja2: 3.0.3 jupyter-client: 7.1.0 jupyter-core: 4.10.0 kiwisolver: 1.4.2 line-profiler: 3.4.0 lxml: 4.7.1 lz4: 3.1.10 MarkupSafe: 2.1.1 matplotlib: 3.5.1 matplotlib-inline: 0.1.3 msgpack: 1.0.3 nest-asyncio: 1.5.5 netCDF4: 1.5.8 networkx: 2.6.3 numexpr: 2.8.1 numpy: 1.22.1 openvr: 1.16.802 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.0.1 pip: 21.3.1 pkginfo: 1.8.2 prompt-toolkit: 3.0.29 psutil: 5.9.0 ptyprocess: 0.7.0 pycollada: 0.7.2 pydicom: 2.2.2 Pygments: 2.11.2 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 PyQt6-commercial: 6.3.0 PyQt6-Qt6: 6.3.0 PyQt6-sip: 13.3.1 PyQt6-WebEngine-commercial: 6.3.0 PyQt6-WebEngine-Qt6: 6.3.0 python-dateutil: 2.8.2 pytz: 2022.1 pyzmq: 23.1.0 qtconsole: 5.3.0 QtPy: 2.1.0 RandomWords: 0.3.0 requests: 2.27.1 scipy: 1.7.3 setuptools: 59.8.0 sfftk-rw: 0.7.2 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 4.3.2 sphinx-autodoc-typehints: 1.15.2 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-community: 1.0.0 tables: 3.7.0 tifffile: 2021.11.2 tinyarray: 1.2.4 tornado: 6.1 traitlets: 5.1.1 urllib3: 1.26.9 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.37.1 wheel-filename: 1.3.0 }}} " defect closed normal Graphics can't reproduce Greg Couch all ChimeraX