id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 7062 Crash dragging/dropping on color panel chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-10.16-x86_64-i386-64bit ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. 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All rights reserved. How to cite UCSF ChimeraX > open /Users/lalitha.veleti/Downloads/TFIP11_processing/TFIP11_5A.mrc format > mrc Opened TFIP11_5A.mrc as #1, grid size 256,256,256, pixel 2.21, shown at level 1.56, step 1, values float32 > open ""/Volumes/plaschka/lalitha.veleti/Structures /human ILS after > Prp43.cif"" format mmcif human ILS after Prp43.cif title: Cryo-EM structure of a human intron lariat spliceosome after Prp43 loaded (ILS2 complex) at 2.9 angstrom resolution [more info...] Chain information for human ILS after Prp43.cif #2 --- Chain | Description | UniProt A | Pre-mRNA-processing-splicing factor 8 | PRP8_HUMAN B | U5snRNA | C | 116 kDa U5 small nuclear ribonucleoprotein component | U5S1_HUMAN E | U5 small nuclear ribonucleoprotein 40 kDa protein | SNR40_HUMAN F | U6snRNA | G | pre-mRNA | H | U2snRNA | I | Pre-mRNA-splicing factor SYF1 | SYF1_HUMAN J | Crooked neck-like protein 1 | CRNL1_HUMAN K | Pre-mRNA-splicing factor SPF27 | SPF27_HUMAN L | Cell division cycle 5-like protein | CDC5L_HUMAN M | Pre-mRNA-splicing factor SYF2 | SYF2_HUMAN N | Protein BUD31 homolog | BUD31_HUMAN O | Pre-mRNA-splicing factor RBM22 | RBM22_HUMAN P | Spliceosome-associated protein CWC15 homolog | CWC15_HUMAN Q | RNA helicase aquarius | AQR_HUMAN R | SNW domain-containing protein 1 | SNW1_HUMAN S | Peptidyl-prolyl cis-trans isomerase-like 1 | PPIL1_HUMAN T | Pleiotropic regulator 1 | PLRG1_HUMAN U | CWF19-like protein 2 | C19L2_HUMAN V | Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 | DHX15_HUMAN W | Pre-mRNA-processing factor 17 | PRP17_HUMAN a h | Small nuclear ribonucleoprotein Sm D3 | SMD3_HUMAN b i | Small nuclear ribonucleoprotein-associated protein | Q66K91_HUMAN c j | Small nuclear ribonucleoprotein Sm D1 | SMD1_HUMAN d k | Small nuclear ribonucleoprotein Sm D2 | SMD2_HUMAN e l | Small nuclear ribonucleoprotein E | RUXE_HUMAN f m | Small nuclear ribonucleoprotein F | RUXF_HUMAN g n | Small nuclear ribonucleoprotein G | RUXG_HUMAN o | U2 small nuclear ribonucleoprotein A' | RU2A_HUMAN p | U2 small nuclear ribonucleoprotein B'' | RU2B_HUMAN q r s t | Pre-mRNA-processing factor 19 | PRP19_HUMAN y | Peptidyl-prolyl cis-trans isomerase E | PPIE_HUMAN Non-standard residues in human ILS after Prp43.cif #2 --- GTP — guanosine-5'-triphosphate IHP — inositol hexakisphosphate (myo-inositol hexakisphosphate; inositol 1,2,3,4,5,6-hexakisphosphate) MG — magnesium ion ZN — zinc ion > show cartoons > hide atoms > fitmap #2 inMap #1 Fit molecule human ILS after Prp43.cif (#2) to map TFIP11_5A.mrc (#1) using 79882 atoms average map value = 1.314, steps = 380 shifted from previous position = 27.1 rotated from previous position = 54.3 degrees atoms outside contour = 51630, contour level = 1.5628 Position of human ILS after Prp43.cif (#2) relative to TFIP11_5A.mrc (#1) coordinates: Matrix rotation and translation 0.77742705 0.39558016 -0.48900258 111.12272291 -0.61412929 0.64531687 -0.45432516 381.25908430 0.13583959 0.65351548 0.74462415 -143.82919598 Axis 0.68218394 -0.38476409 -0.62175692 Axis point 0.00000000 411.09735888 533.94047189 Rotation angle (degrees) 54.28992278 Shift along axis 18.53813001 > fitmap #2 inMap #1 Fit molecule human ILS after Prp43.cif (#2) to map TFIP11_5A.mrc (#1) using 79882 atoms average map value = 1.314, steps = 44 shifted from previous position = 0.00201 rotated from previous position = 0.00838 degrees atoms outside contour = 51630, contour level = 1.5628 Position of human ILS after Prp43.cif (#2) relative to TFIP11_5A.mrc (#1) coordinates: Matrix rotation and translation 0.77739563 0.39568992 -0.48896372 111.09015084 -0.61419689 0.64523402 -0.45435146 381.30594875 0.13571374 0.65353084 0.74463362 -143.80287054 Axis 0.68217795 -0.38464482 -0.62183728 Axis point 0.00000000 411.04926491 533.97022142 Rotation angle (degrees) 54.29362014 Shift along axis 18.53787762 > select #2 79882 atoms, 81847 bonds, 319 pseudobonds, 11135 residues, 4 models selected > ui mousemode right ""rotate selected models"" > view matrix models > #2,0.066878,0.116,0.99099,-20.13,0.84948,0.51436,-0.11754,-72.953,-0.52337,0.84969,-0.064143,201.38 > view matrix models > #2,0.38295,0.11183,0.91698,-85.233,0.8753,0.27338,-0.39888,52.588,-0.29529,0.95538,0.0068047,95.289 > ui mousemode right ""translate selected models"" > view matrix models > #2,0.38295,0.11183,0.91698,-94.894,0.8753,0.27338,-0.39888,40.73,-0.29529,0.95538,0.0068047,141.47 > view matrix models > #2,0.38295,0.11183,0.91698,-93.085,0.8753,0.27338,-0.39888,47.438,-0.29529,0.95538,0.0068047,147.02 > ui mousemode right ""rotate selected models"" > view matrix models > #2,0.14753,0.15915,0.97617,-56.336,0.92429,0.3291,-0.19334,-33.634,-0.35202,0.93079,-0.098548,196.19 > fitmap #2 inMap #1 Fit molecule human ILS after Prp43.cif (#2) to map TFIP11_5A.mrc (#1) using 79882 atoms average map value = 1.317, steps = 176 shifted from previous position = 51.5 rotated from previous position = 14.3 degrees atoms outside contour = 54199, contour level = 1.5628 Position of human ILS after Prp43.cif (#2) relative to TFIP11_5A.mrc (#1) coordinates: Matrix rotation and translation 0.00620939 0.29314563 0.95604764 -36.56933877 0.86334505 0.48084556 -0.15304532 -32.93618289 -0.50457583 0.82634931 -0.25010007 267.92271931 Axis 0.52976932 0.79007325 0.30842946 Axis point 101.34174586 0.00000000 164.22863349 Rotation angle (degrees) 112.42802563 Shift along axis 37.23994912 > fitmap #2 inMap #1 Fit molecule human ILS after Prp43.cif (#2) to map TFIP11_5A.mrc (#1) using 79882 atoms average map value = 1.317, steps = 48 shifted from previous position = 0.0423 rotated from previous position = 0.0141 degrees atoms outside contour = 54199, contour level = 1.5628 Position of human ILS after Prp43.cif (#2) relative to TFIP11_5A.mrc (#1) coordinates: Matrix rotation and translation 0.00631304 0.29335660 0.95598225 -36.63023264 0.86332615 0.48081553 -0.15324617 -32.90815258 -0.50460688 0.82629192 -0.25022701 267.96168944 Axis 0.52985323 0.79006408 0.30830879 Axis point 101.32438661 0.00000000 164.25939990 Rotation angle (degrees) 112.42967808 Shift along axis 37.20674840 > fitmap #2 inMap #1 Fit molecule human ILS after Prp43.cif (#2) to map TFIP11_5A.mrc (#1) using 79882 atoms average map value = 1.317, steps = 28 shifted from previous position = 0.0352 rotated from previous position = 0.0126 degrees atoms outside contour = 54200, contour level = 1.5628 Position of human ILS after Prp43.cif (#2) relative to TFIP11_5A.mrc (#1) coordinates: Matrix rotation and translation 0.00623673 0.29316066 0.95604285 -36.57664899 0.86333228 0.48085690 -0.15308174 -32.93201142 -0.50459734 0.82633738 -0.25009609 267.92647446 Axis 0.52977752 0.79007477 0.30841148 Axis point 101.34181612 0.00000000 164.23205516 Rotation angle (degrees) 112.42670327 Shift along axis 37.23536386 > view matrix models > #2,0.5411,-0.13922,0.82936,-43.734,0.77788,0.4576,-0.4307,69.249,-0.31955,0.87819,0.35591,45.015 > ui mousemode right ""translate selected models"" > view matrix models > #2,0.5411,-0.13922,0.82936,-85.339,0.77788,0.4576,-0.4307,37.4,-0.31955,0.87819,0.35591,81.364 > ui mousemode right ""rotate selected models"" > view matrix models > #2,-0.89492,0.20913,-0.39418,543.4,-0.074674,0.80073,0.59436,-85.32,0.43993,0.56134,-0.70097,231.39 > fitmap #2 inMap #1 Fit molecule human ILS after Prp43.cif (#2) to map TFIP11_5A.mrc (#1) using 79882 atoms average map value = 1.285, steps = 320 shifted from previous position = 56.1 rotated from previous position = 39 degrees atoms outside contour = 54788, contour level = 1.5628 Position of human ILS after Prp43.cif (#2) relative to TFIP11_5A.mrc (#1) coordinates: Matrix rotation and translation -0.50938809 0.53660839 -0.67273711 474.63467490 -0.31891401 0.60837986 0.72675154 19.08493675 0.79926068 0.58474387 -0.13876952 -43.22364971 Axis -0.08311990 -0.86158942 -0.50075418 Axis point 256.08875626 0.00000000 126.72179755 Rotation angle (degrees) 121.32479763 Shift along axis -34.25054438 > view matrix models > #2,0.3334,-0.091569,0.93833,-28.237,0.93204,0.18182,-0.31342,57.935,-0.14191,0.97906,0.14597,41.475 > view matrix models > #2,0.57456,-0.36648,0.73182,27.328,0.81846,0.25748,-0.51364,123.41,-0.00019011,0.89409,0.44789,-56.272 > view matrix models > #2,0.52474,0.4377,0.73011,-152.77,0.61026,0.40454,-0.68112,188.65,-0.59349,0.80297,-0.054828,259.47 > ui mousemode right ""translate selected models"" > view matrix models > #2,0.52474,0.4377,0.73011,-179.27,0.61026,0.40454,-0.68112,130.99,-0.59349,0.80297,-0.054828,270.95 > ui mousemode right ""rotate selected models"" > view matrix models > #2,0.2247,0.77138,0.59539,-142.83,0.86047,0.12965,-0.49273,79.678,-0.45727,0.62303,-0.63461,430.75 > ui mousemode right ""translate selected models"" > ui mousemode right ""rotate selected models"" > view matrix models > #2,-0.21234,-0.11406,0.97052,90.12,0.76499,0.59856,0.23772,-200.73,-0.60803,0.79292,-0.039838,273.35 > ui mousemode right ""translate selected models"" > view matrix models > #2,-0.21234,-0.11406,0.97052,84.617,0.76499,0.59856,0.23772,-142.04,-0.60803,0.79292,-0.039838,299.93 > fitmap #2 inMap #1 Fit molecule human ILS after Prp43.cif (#2) to map TFIP11_5A.mrc (#1) using 79882 atoms average map value = 1.317, steps = 216 shifted from previous position = 47.3 rotated from previous position = 8.97 degrees atoms outside contour = 54455, contour level = 1.5628 Position of human ILS after Prp43.cif (#2) relative to TFIP11_5A.mrc (#1) coordinates: Matrix rotation and translation -0.19947407 -0.16215914 0.96639252 115.19291891 0.84381790 0.47296005 0.25353527 -111.18371617 -0.49817812 0.86603303 0.04248952 194.22548535 Axis 0.32590225 0.77927938 0.53526757 Axis point 154.91224400 0.00000000 91.57732661 Rotation angle (degrees) 109.99951871 Shift along axis 54.86105834 > ui mousemode right ""rotate selected models"" > ui mousemode right ""translate selected models"" > view matrix models > #2,-0.19947,-0.16216,0.96639,110.75,0.84382,0.47296,0.25354,-113.88,-0.49818,0.86603,0.04249,195.77 > view matrix models > #2,-0.19947,-0.16216,0.96639,106.95,0.84382,0.47296,0.25354,-131.33,-0.49818,0.86603,0.04249,211.98 > fitmap #2 inMap #1 Fit molecule human ILS after Prp43.cif (#2) to map TFIP11_5A.mrc (#1) using 79882 atoms average map value = 1.324, steps = 136 shifted from previous position = 29.9 rotated from previous position = 5.62 degrees atoms outside contour = 54828, contour level = 1.5628 Position of human ILS after Prp43.cif (#2) relative to TFIP11_5A.mrc (#1) coordinates: Matrix rotation and translation -0.23962239 -0.09997002 0.96570550 113.98354409 0.87202882 0.41509501 0.25934893 -107.08340352 -0.42678666 0.90426883 -0.01228932 177.58577151 Axis 0.35503083 0.76657215 0.53508901 Axis point 144.02478648 0.00000000 86.47887427 Rotation angle (degrees) 114.73414037 Shift along axis 53.40471104 > ~select #2 Nothing selected > volume #1 color #b2b2b24e > volume #1 color #b2b2b277 > lighting soft > select #1 2 models selected > view matrix models #1,1,0,0,-8.7605,0,1,0,73.52,0,0,1,-106.51 > undo > select #2 79882 atoms, 81847 bonds, 319 pseudobonds, 11135 residues, 4 models selected > view matrix models > #2,-0.23962,-0.09997,0.96571,112.5,0.87203,0.4151,0.25935,-91.855,-0.42679,0.90427,-0.012289,156.5 > view matrix models > #2,-0.23962,-0.09997,0.96571,108.45,0.87203,0.4151,0.25935,6.3365,-0.42679,0.90427,-0.012289,36.619 > undo > ui mousemode right ""rotate selected models"" > view matrix models > #2,0.81247,0.50233,-0.2959,15.542,-0.52073,0.8535,0.019146,243.42,0.26217,0.13853,0.95503,-101.26 > view matrix models > #2,0.034956,0.77476,0.63128,-84.585,-0.49688,0.56154,-0.66165,487.42,-0.86712,-0.29054,0.40459,453.95 > view matrix models > #2,0.73663,0.38133,-0.55853,134.74,-0.072194,0.86549,0.49569,-7.0658,0.67243,-0.32482,0.66508,-24.003 > view matrix models > #2,-0.54259,0.56895,-0.61798,451.96,-0.25091,0.59232,0.76563,35.924,0.80165,0.57048,-0.17863,-51.986 > fitmap #2 inMap #1 Fit molecule human ILS after Prp43.cif (#2) to map TFIP11_5A.mrc (#1) using 79882 atoms average map value = 1.363, steps = 288 shifted from previous position = 57.1 rotated from previous position = 35.6 degrees atoms outside contour = 52229, contour level = 1.5628 Position of human ILS after Prp43.cif (#2) relative to TFIP11_5A.mrc (#1) coordinates: Matrix rotation and translation -0.05443271 0.52217921 -0.85109694 408.72560722 -0.61105780 0.65669897 0.44198972 143.97149416 0.78971229 0.54412811 0.28333580 -159.62669324 Axis 0.05115294 -0.82174997 -0.56754768 Axis point 302.78383144 0.00000000 105.52094751 Rotation angle (degrees) 93.27904903 Shift along axis -6.80529455 > view matrix models > #2,-0.032969,0.51345,0.85749,-46.759,-0.97764,0.16172,-0.13442,515.2,-0.20769,-0.84274,0.49664,389.01 > view matrix models > #2,0.083651,0.91221,0.40109,-53.918,-0.98898,0.12534,-0.0788,512.34,-0.12215,-0.39007,0.91265,146.6 > view matrix models > #2,-0.040929,0.79139,0.60994,-46.214,-0.85139,-0.34711,0.39325,464.24,0.52293,-0.5032,0.68799,58.424 > view matrix models > #2,-0.035285,0.6303,0.77555,-52.662,-0.9973,-0.072265,0.013357,537.91,0.064465,-0.77298,0.63115,262.84 > fitmap #2 inMap #1 Fit molecule human ILS after Prp43.cif (#2) to map TFIP11_5A.mrc (#1) using 79882 atoms average map value = 2.349, steps = 232 shifted from previous position = 46.9 rotated from previous position = 24.3 degrees atoms outside contour = 21719, contour level = 1.5628 Position of human ILS after Prp43.cif (#2) relative to TFIP11_5A.mrc (#1) coordinates: Matrix rotation and translation 0.09586291 0.75056250 0.65380909 -111.68879727 -0.90245336 -0.21160273 0.37523628 481.41945469 0.41998607 -0.62600340 0.65706276 151.49861418 Axis -0.51432837 0.12011291 -0.84914028 Axis point 123.46798981 306.70264936 0.00000000 Rotation angle (degrees) 103.25813108 Shift along axis -13.37416596 > ~select #2 Nothing selected > open /Users/lalitha.veleti/Downloads/TFIP11_processing/C.elegans_1mil_3A.mrc Opened C.elegans_1mil_3A.mrc as #3, grid size 550,550,550, pixel 1.2, shown at level 0.403, step 4, values float32 > select #3 2 models selected > ui mousemode right ""translate selected models"" > view matrix models #3,1,0,0,-476.19,0,1,0,-126.79,0,0,1,-403.6 > view matrix models #3,1,0,0,-662.53,0,1,0,-104.85,0,0,1,-711.56 > volume #3 color #e6ffe1 > volume #3 color #ffdeed > volume #3 color #f9ffe9 > volume #3 color #ecffed > volume #3 color #ff8acd > volume #3 color #f7fff5 > volume #3 color #bdc3bb > lighting soft > graphics silhouettes true > volume #3 step 2 > volume #3 step 1 > volume #3 level 1.258 > ui mousemode right translate > volume #3 level 1.711 > volume #3 level 1.46 > volume #3 > volume sel style surface > ~select #3 Nothing selected > volume #3 level 1.812 > volume #3 step 2 > volume #3 level 1.359 > volume #3 step 1 > volume #3 level 1 > volume #3 level 2 > volume #3 level 1.5 > volume #3 level 1.2 > volume #3 level 1.02 > lighting soft > set bgColor white > hide #!3 models > color #1 #b2b2b278 models > volume #1 color #bf95be78 > volume #1 color #7da9bf78 > volume #1 color #7baabf78 > volume #1 color #7db1bf78 > lighting soft > lighting full > volume #1 color #7db1bf78 ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.3 (2021-12-08) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 INTEL-18.4.6 OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 640 OpenGL vendor: Intel Inc.Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro14,1 Processor Name: Dual-Core Intel Core i5 Processor Speed: 2,3 GHz Number of Processors: 1 Total Number of Cores: 2 L2 Cache (per Core): 256 KB L3 Cache: 4 MB Hyper-Threading Technology: Enabled Memory: 16 GB System Firmware Version: 447.80.3.0.0 OS Loader Version: 540.80.2~11 SMC Version (system): 2.43f11 Software: System Software Overview: System Version: macOS 12.2 (21D49) Kernel Version: Darwin 21.3.0 Time since boot: 59 days 12:25 Graphics/Displays: Intel Iris Plus Graphics 640: Chipset Model: Intel Iris Plus Graphics 640 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x5926 Revision ID: 0x0006 Metal Family: Supported, Metal GPUFamily macOS 2 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Framebuffer Depth: 30-Bit Color (ARGB2101010) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal HP ZR2440w: Resolution: 1920 x 1200 (WUXGA - Widescreen Ultra eXtended Graphics Array) UI Looks like: 1920 x 1200 @ 60.00Hz Framebuffer Depth: 30-Bit Color (ARGB2101010) Display Serial Number: CNT20302WB Mirror: Off Online: Yes Rotation: Supported Automatically Adjust Brightness: Yes Connection Type: DVI or HDMI Adapter Firmware Version: 5,05 Locale: (None, 'UTF-8') PyQt5 5.15.2, Qt 5.15.2 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.2 Babel: 2.9.1 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2021.5.30 cftime: 1.5.1.1 charset-normalizer: 2.0.9 ChimeraX-AddCharge: 1.2.2 ChimeraX-AddH: 2.1.11 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.2.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.31 ChimeraX-AtomicLibrary: 4.2 ChimeraX-AtomSearch: 2.0 ChimeraX-AtomSearchLibrary: 1.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.0 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.6.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.2 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.2 ChimeraX-Clipper: 0.17.0 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5 ChimeraX-CommandLine: 1.1.5 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.3 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1.5 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.1.2 ChimeraX-Help: 1.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ISOLDE: 1.3 ChimeraX-ItemsInspection: 1.0 ChimeraX-Label: 1.1 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.4 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 2.0.4 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.4 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.2.6 ChimeraX-ModelPanel: 1.2.1 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.2 ChimeraX-OpenCommand: 1.7 ChimeraX-PDB: 2.6.5 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.4.6 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.1 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.6.1 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1 ChimeraX-ToolshedUtils: 1.2 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.13.7 ChimeraX-uniprot: 2.2 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.0.1 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.4 cxservices: 1.1 cycler: 0.11.0 Cython: 0.29.24 decorator: 5.1.0 docutils: 0.17.1 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 3.6.0 html2text: 2020.1.16 idna: 3.3 ihm: 0.21 imagecodecs: 2021.4.28 imagesize: 1.3.0 ipykernel: 5.5.5 ipython: 7.23.1 ipython-genutils: 0.2.0 jedi: 0.18.0 Jinja2: 3.0.1 jupyter-client: 6.1.12 jupyter-core: 4.9.1 kiwisolver: 1.3.2 lxml: 4.6.3 lz4: 3.1.3 MarkupSafe: 2.0.1 matplotlib: 3.4.3 matplotlib-inline: 0.1.3 msgpack: 1.0.2 netCDF4: 1.5.7 networkx: 2.6.3 numexpr: 2.8.0 numpy: 1.21.2 openvr: 1.16.801 packaging: 21.0 ParmEd: 3.2.0 parso: 0.8.3 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 8.3.2 pip: 21.2.4 pkginfo: 1.7.1 prompt-toolkit: 3.0.23 psutil: 5.8.0 ptyprocess: 0.7.0 pycollada: 0.7.1 pydicom: 2.1.2 Pygments: 2.10.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.6 PyQt5-commercial: 5.15.2 PyQt5-sip: 12.8.1 PyQtWebEngine-commercial: 5.15.2 python-dateutil: 2.8.2 pytz: 2021.3 pyzmq: 22.3.0 qtconsole: 5.1.1 QtPy: 1.11.3 RandomWords: 0.3.0 requests: 2.26.0 scipy: 1.7.1 setuptools: 57.5.0 sfftk-rw: 0.7.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 4.2.0 sphinx-autodoc-typehints: 1.12.0 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-jurko: 0.6 tifffile: 2021.4.8 tinyarray: 1.2.3 tornado: 6.1 traitlets: 5.1.1 urllib3: 1.26.7 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.37.0 wheel-filename: 1.3.0 }}} " defect closed normal Window Toolkit can't reproduce Tom Goddard all ChimeraX