id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 7057 Crash in event loop in SLSIsDisplayChangedSeedValid chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-10.16-x86_64-i386-64bit ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Thread 0x0000000322b32000 (most recent call first): File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 576 in _handle_results File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x0000000321b2f000 (most recent call first): File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 528 in _handle_tasks File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x0000000320b2c000 (most recent call first): File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/selectors.py"", line 416 in select File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/connection.py"", line 936 in wait File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 499 in _wait_for_updates File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 519 in _handle_workers File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x000000031fb29000 (most recent call first): File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 114 in worker File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x000000031eb26000 (most recent call first): File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 114 in worker File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x000000031db23000 (most recent call first): File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 114 in worker File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x000000031cb20000 (most recent call first): File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 114 in worker File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x000000031bb1d000 (most recent call first): File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 114 in worker File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x000000031ab1a000 (most recent call first): File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 114 in worker File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x0000000319b17000 (most recent call first): File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 114 in worker File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 910 in run File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Thread 0x0000000318b14000 (most recent call first): File ""/private/var/folders/d4/lx7drs1j4db74zqmlb2rj9g80000gn/T/AppTranslocation/84D88C0F-77B9-4B54-B330-79F0CDD05FEC/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py"", line 114 in worker File 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System Profile: Network Service: Wi-Fi, AirPort, en0 Thunderbolt Bus: MacBook Pro, Apple Inc. Thunderbolt Bus: MacBook Pro, Apple Inc. Thunderbolt Bus: MacBook Pro, Apple Inc. Boot Volume File System Type: apfs Memory Module: LPDDR5 USB Device: USB31Bus USB Device: USB31Bus USB Device: USB31Bus Display: Color LCD, 3024 x 1964 Retina, Main, MirrorOff, Online Model: MacBookPro18,4, BootROM 7429.41.5, proc 10:8:2 processors, 32 GB, SMC Graphics: Apple M1 Max, Apple M1 Max, Built-In AirPort: Wi-Fi, wl0: Sep 24 2021 15:49:44 version 20.10.853.23.8.7.106 FWID 01-78e271b2 Bluetooth: Version (null), 0 services, 0 devices, 0 incoming serial ports ===== Log before crash start ===== Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.3 (2021-12-08) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > ui tool show AlphaFold > alphafold predict > MESFFSRSTSIVSKLSFLALWIVFLISSSSFTSTEAYDALDPEGNITMKWDVMSWTPDGYVAVVTMFNFQKYRHIQSPGWTLGWKWAKKEVIWSMVGAQTTEQGDCSKYKGNIPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVMNSWVQDPATAASSFQISVGAAGTTNKTVRVPRNFTLMGPGPGYTCGPAKIVRPTKFVTTDTRRTTQAMMTWNITCTYSQFLAQRTPTCCVSLSSFYNETIVGCPTCACGCQNNRTESGACLDPDTPHLASVVSPPTKKGTVLPPLVQCTRHMCPIRVHWHVKQNYKEYWRVKITITNFNYRLNYTQWNLVAQHPNLDNITQIFSFNYKSLTPYAGLNDTAMLWGVKFYNDFLSEAGPLGNVQSEILFRKDQSTFTFEKGWAFPRRIYFNGDNCVMPPPDSYPFLPNGGSRSQFSFVAAVLLPLLVFFFFSA Running AlphaFold prediction > alphafold predict > MESFFSRSTSIVSKLSFLALWIVFLISSSSFTSTEAYDALDPEGNITMKWDVMSWTPDGYVAVVTMFNFQKYRHIQSPGWTLGWKWAKKEVIWSMVGAQTTEQGDCSKYKGNIPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVMNSWVQDPATAASSFQISVGAAGTTNKTVRVPRNFTLMGPGPGYTCGPAKIVRPTKFVTTDTRRTTQAMMTWNITCTYSQFLAQRTPTCCVSLSSFYNETIVGCPTCACGCQNNRTESGACLDPDTPHLASVVSPPTKKGTVLPPLVQCTRHMCPIRVHWHVKQNYKEYWRVKITITNFNYRLNYTQWNLVAQHPNLDNITQIFSFNYKSLTPYAGLNDTAMLWGVKFYNDFLSEAGPLGNVQSEILFRKDQSTFTFEKGWAFPRRIYFNGDNCVMPPPDSYPFLPNGGSRSQFSFVAAVLLPLLVFFFFSA Running AlphaFold prediction > help help:quickstart > save /Users/kamdiehl/Downloads/firstAttemptChimeraX.cxs > open /Users/kamdiehl/Downloads/firstAttemptChimeraX.cxs format session opened ChimeraX session > open /Users/kamdiehl/Downloads/firstAttemptChimeraX.cxs format session opened ChimeraX session > open /Users/kamdiehl/Downloads/firstAttemptChimeraX.cxs format session opened ChimeraX session > open /Users/kamdiehl/Downloads/firstAttemptChimeraX.cxs format session opened ChimeraX session > open /Users/kamdiehl/Downloads/firstAttemptChimeraX.cxs format session opened ChimeraX session > show # target m Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models', 'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword > open /Users/kamdiehl/Downloads/firstAttemptChimeraX.cxs format session opened ChimeraX session > open firstAttemptChimeraX 'firstAttemptChimeraX' has no suffix > open firstAttemptChimeraX.cxs No such file/path: firstAttemptChimeraX.cxs > open firstAttemptChimeraX.cxs\downloads Unrecognized file suffix '.cxs\downloads' > open \downloads\firstAttemptChimeraX.cxs No such file/path: \downloads\firstAttemptChimeraX.cxs > open downloads\firstAttemptChimeraX.cxs No such file/path: downloads\firstAttemptChimeraX.cxs > open downloads/firstAttemptChimeraX.cxs No such file/path: downloads/firstAttemptChimeraX.cxs > open /downloads/firstAttemptChimeraX.cxs No such file/path: /downloads/firstAttemptChimeraX.cxs > save /Users/kamdiehl/Desktop/image1.png supersample 3 ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.3 (2021-12-08) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 76.1 OpenGL renderer: Apple M1 Max OpenGL vendor: AppleHardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro18,4 Processor Name: Unknown Processor Speed: 2.4 GHz Number of Processors: 1 Total Number of Cores: 10 L2 Cache: 20 MB Memory: 32 GB Software: System Software Overview: System Version: macOS 12.0.1 (21A559) Kernel Version: Darwin 21.1.0 Time since boot: 1 day 14:04 Graphics/Displays: Apple G13X: Chipset Model: Apple G13X Type: GPU Bus: Built-In Total Number of Cores: 32 Vendor: Apple (0x106b) Metal Family: Supported, Metal GPUFamily Apple 7 Displays: Color LCD: Display Type: Built-in Liquid Retina XDR Display Resolution: 3024 x 1964 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal Locale: (None, 'UTF-8') PyQt5 5.15.2, Qt 5.15.2 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.2 Babel: 2.9.1 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2021.5.30 cftime: 1.5.1.1 charset-normalizer: 2.0.9 ChimeraX-AddCharge: 1.2.2 ChimeraX-AddH: 2.1.11 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.2.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.31 ChimeraX-AtomicLibrary: 4.2 ChimeraX-AtomSearch: 2.0 ChimeraX-AtomSearchLibrary: 1.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.0 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.6.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.2 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.2 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5 ChimeraX-CommandLine: 1.1.5 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.3 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1.5 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.1.2 ChimeraX-Help: 1.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0 ChimeraX-Label: 1.1 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.4 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 2.0.4 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.4 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.2.6 ChimeraX-ModelPanel: 1.2.1 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.2 ChimeraX-OpenCommand: 1.7 ChimeraX-PDB: 2.6.5 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.4.6 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.1 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.6.1 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1 ChimeraX-ToolshedUtils: 1.2 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.13.7 ChimeraX-uniprot: 2.2 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.0.1 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.4 cxservices: 1.1 cycler: 0.11.0 Cython: 0.29.24 decorator: 5.1.0 docutils: 0.17.1 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 3.6.0 html2text: 2020.1.16 idna: 3.3 ihm: 0.21 imagecodecs: 2021.4.28 imagesize: 1.3.0 ipykernel: 5.5.5 ipython: 7.23.1 ipython-genutils: 0.2.0 jedi: 0.18.0 Jinja2: 3.0.1 jupyter-client: 6.1.12 jupyter-core: 4.9.1 kiwisolver: 1.3.2 lxml: 4.6.3 lz4: 3.1.3 MarkupSafe: 2.0.1 matplotlib: 3.4.3 matplotlib-inline: 0.1.3 msgpack: 1.0.2 netCDF4: 1.5.7 networkx: 2.6.3 numexpr: 2.8.0 numpy: 1.21.2 openvr: 1.16.801 packaging: 21.0 ParmEd: 3.2.0 parso: 0.8.3 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 8.3.2 pip: 21.2.4 pkginfo: 1.7.1 prompt-toolkit: 3.0.23 psutil: 5.8.0 ptyprocess: 0.7.0 pycollada: 0.7.1 pydicom: 2.1.2 Pygments: 2.10.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.6 PyQt5-commercial: 5.15.2 PyQt5-sip: 12.8.1 PyQtWebEngine-commercial: 5.15.2 python-dateutil: 2.8.2 pytz: 2021.3 pyzmq: 22.3.0 qtconsole: 5.1.1 QtPy: 1.11.3 RandomWords: 0.3.0 requests: 2.26.0 scipy: 1.7.1 setuptools: 57.5.0 sfftk-rw: 0.7.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 4.2.0 sphinx-autodoc-typehints: 1.12.0 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-jurko: 0.6 tifffile: 2021.4.8 tinyarray: 1.2.3 tornado: 6.1 traitlets: 5.1.1 urllib3: 1.26.7 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.37.0 wheel-filename: 1.3.0 }}} " defect closed normal Core can't reproduce Tom Goddard all ChimeraX