id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 6841 write_gltf: No such file or directory jc3534@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: Windows-10-10.0.19041 ChimeraX Version: 1.1 (2020-09-09 22:22:27 UTC) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 1.1 (2020-09-09) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open 1Ik8 Summary of feedback from opening 1Ik8 fetched from pdb --- note | Fetching compressed mmCIF 1ik8 from http://files.rcsb.org/download/1ik8.cif 1ik8 title: NMR structure of Alpha-Bungarotoxin [more info...] Chain information for 1ik8 #1 --- Chain | Description A | long neurotoxin 1 > preset cartoons/nucleotides cylinders/stubs Changed 0 atom styles Preset expands to these ChimeraX commands: show nucleic hide protein|solvent|H surf hide style (protein|nucleic|solvent) & @@draw_mode=0 stick cartoon cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20 cartoon style ~(nucleic|strand) x round cartoon style (nucleic|strand) x rect cartoon style protein modeh tube rad 2 sides 24 thick 0.6 cartoon style nucleic x round width 1.6 thick 1.6 nucleotides stubs > preset cartoons/nucleotides cylinders/stubs Changed 0 atom styles Preset expands to these ChimeraX commands: show nucleic hide protein|solvent|H surf hide style (protein|nucleic|solvent) & @@draw_mode=0 stick cartoon cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20 cartoon style ~(nucleic|strand) x round cartoon style (nucleic|strand) x rect cartoon style protein modeh tube rad 2 sides 24 thick 0.6 cartoon style nucleic x round width 1.6 thick 1.6 nucleotides stubs > preset ""initial styles"" sticks Preset implemented in Python; no expansion to individual ChimeraX commands available. > preset ""initial styles"" ""space-filling (chain colors)"" Preset implemented in Python; no expansion to individual ChimeraX commands available. > preset cartoons/nucleotides ribbons/slabs Changed 551 atom styles Preset expands to these ChimeraX commands: show nucleic hide protein|solvent|H surf hide style (protein|nucleic|solvent) & @@draw_mode=0 stick cartoon cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20 cartoon style ~(nucleic|strand) x round cartoon style (nucleic|strand) x rect nucleotides tube/slab shape box > preset ""initial styles"" ""space-filling (single color)"" Preset implemented in Python; no expansion to individual ChimeraX commands available. > preset ""initial styles"" ""original look"" Preset implemented in Python; no expansion to individual ChimeraX commands available. > close session > open 2abx Summary of feedback from opening 2abx fetched from pdb --- note | Fetching compressed mmCIF 2abx from http://files.rcsb.org/download/2abx.cif 2abx title: The crystal structure of α-bungarotoxin At 2.5 angstroms resolution. Relation to solution structure and binding to acetylcholine receptor [more info...] Chain information for 2abx #1 --- Chain | Description A B | α-bungarotoxin > close session > open 6uwz Summary of feedback from opening 6uwz fetched from pdb --- notes | Fetching compressed mmCIF 6uwz from http://files.rcsb.org/download/6uwz.cif Fetching CCD MAN from http://ligand-expo.rcsb.org/reports/M/MAN/MAN.cif Fetching CCD POV from http://ligand-expo.rcsb.org/reports/P/POV/POV.cif Fetching CCD OCT from http://ligand-expo.rcsb.org/reports/O/OCT/OCT.cif Fetching CCD P1L from http://ligand-expo.rcsb.org/reports/P/P1L/P1L.cif 6uwz title: Cryo-EM structure of Torpedo acetylcholine receptor in complex with alpha- bungarotoxin [more info...] Chain information for 6uwz #1 --- Chain | Description A D | Acetylcholine receptor subunit α B | Acetylcholine receptor subunit δ C | Acetylcholine receptor subunit β E | Acetylcholine receptor subunit γ F G | Alpha-bungarotoxin Non-standard residues in 6uwz #1 --- BMA — beta-D-mannopyranose MAN — alpha-D-mannopyranose NAG — 2-acetamido-2-deoxy-beta-D-glucopyranose OCT — N-octane POV — (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate (POPC) > select /F:1-73 546 atoms, 565 bonds, 73 residues, 1 model selected > preset cartoons/nucleotides cylinders/stubs Changed 17593 atom styles Preset expands to these ChimeraX commands: show nucleic hide protein|solvent|H surf hide style (protein|nucleic|solvent) & @@draw_mode=0 stick cartoon cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20 cartoon style ~(nucleic|strand) x round cartoon style (nucleic|strand) x rect cartoon style protein modeh tube rad 2 sides 24 thick 0.6 cartoon style nucleic x round width 1.6 thick 1.6 nucleotides stubs > style sel sphere Changed 546 atom styles > preset ""initial styles"" ""space-filling (chain colors)"" Preset implemented in Python; no expansion to individual ChimeraX commands available. > show sel surfaces > hide sel cartoons > hide sel atoms > select 18322 atoms, 18698 bonds, 5 pseudobonds, 2356 residues, 2 models selected > hide sel cartoons > hide sel atoms > show sel surfaces > save 6uwz.glb > save ""G:/My Drive/3D protein models/6uwz.gif"" width 1340 height 785 > supersample 3 > save 6uwz.glb > save G:/My Drive/3D protein models/6uwz.glb Cannot determine format for 'G:/My' > CD G:/My Drive/3D protein models Unknown command: CD G:/My Drive/3D protein models > CD G: Unknown command: CD G: > CD G:\My Drive\3D protein models Unknown command: CD G:\My Drive\3D protein models > cd G:\My Drive\3D protein models Expected a keyword > cd G:\My Drive\3D protein models Expected a keyword > cd G: Current working directory is: G:\ Unknown or unsupported skia image format > save 6uwz.glb Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py"", line 275, in execute cmd.run(cmd_text) File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\save_command\cmd.py"", line 66, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\save_command\cmd.py"", line 79, in provider_save mgr).save(session, path, **provider_kw) File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\gltf\\__init__.py"", line 39, in save gltf.write_gltf(session, path, models, **kw) File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\gltf\gltf.py"", line 336, in write_gltf file = open(filename, 'wb') FileNotFoundError: [Errno 2] No such file or directory: '6uwz.glb' FileNotFoundError: [Errno 2] No such file or directory: '6uwz.glb' File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\gltf\gltf.py"", line 336, in write_gltf file = open(filename, 'wb') See log for complete Python traceback. > save 6uwz.glb Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py"", line 275, in execute cmd.run(cmd_text) File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\save_command\cmd.py"", line 66, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\save_command\cmd.py"", line 79, in provider_save mgr).save(session, path, **provider_kw) File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\gltf\\__init__.py"", line 39, in save gltf.write_gltf(session, path, models, **kw) File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\gltf\gltf.py"", line 336, in write_gltf file = open(filename, 'wb') FileNotFoundError: [Errno 2] No such file or directory: '6uwz.glb' FileNotFoundError: [Errno 2] No such file or directory: '6uwz.glb' File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\gltf\gltf.py"", line 336, in write_gltf file = open(filename, 'wb') See log for complete Python traceback. > open 6uwz 6uwz title: Cryo-EM structure of Torpedo acetylcholine receptor in complex with alpha- bungarotoxin [more info...] Chain information for 6uwz #2 --- Chain | Description A D | Acetylcholine receptor subunit α B | Acetylcholine receptor subunit δ C | Acetylcholine receptor subunit β E | Acetylcholine receptor subunit γ F G | Alpha-bungarotoxin Non-standard residues in 6uwz #2 --- BMA — beta-D-mannopyranose MAN — alpha-D-mannopyranose NAG — 2-acetamido-2-deoxy-beta-D-glucopyranose OCT — N-octane POV — (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate (POPC) > hide sel cartoons > hide sel atoms > show sel surfaces > preset cartoons/nucleotides licorice/ovals Changed 35186 atom styles Preset expands to these ChimeraX commands: show nucleic hide protein|solvent|H surf hide style (protein|nucleic|solvent) & @@draw_mode=0 stick cartoon cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20 cartoon style ~(nucleic|strand) x round cartoon style (nucleic|strand) x rect cartoon style protein modeh default arrows f x round width 1 thick 1 cartoon style nucleic x round width 1.6 thick 1.6 nucleotides tube/slab shape ellipsoid > hide sel cartoons > show sel surfaces > hide #!1 models > ~select #1 7 models selected > select 36644 atoms, 37396 bonds, 10 pseudobonds, 4712 residues, 4 models selected > show sel & #!2 surfaces > close session > open C:\ProgramData\ChimeraX\6uwz.glb format gltf Opened glTF file containing 1 scenes, 8 nodes, 7 meshes > save ""G:/My Drive/3D protein models/6uwz.glb"" > close session > open 1Iob Summary of feedback from opening 1Iob fetched from pdb --- note | Fetching compressed mmCIF 1iob from http://files.rcsb.org/download/1iob.cif 1iob title: Interleukin-1 β from joint X-ray and NMR refinement [more info...] Chain information for 1iob #1 --- Chain | Description A | interleukin-1 β > close session > open 5Iob Summary of feedback from opening 5Iob fetched from pdb --- notes | Fetching compressed mmCIF 5iob from http://files.rcsb.org/download/5iob.cif Fetching CCD GOL from http://ligand-expo.rcsb.org/reports/G/GOL/GOL.cif Fetching CCD MES from http://ligand-expo.rcsb.org/reports/M/MES/MES.cif 5iob title: Crystal structure of beta-N-acetylglucosaminidase-like protein from Corynebacterium glutamicum [more info...] Chain information for 5iob #1 --- Chain | Description A B C D E F G H | Beta-glucosidase-related glycosidases Non-standard residues in 5iob #1 --- CL — chloride ion GOL — glycerol (glycerin; propane-1,2,3-triol) MES — 2-(N-morpholino)-ethanesulfonic acid SO4 — sulfate ion 5iob mmCIF Assemblies --- 1| author_and_software_defined_assembly 2| author_and_software_defined_assembly 3| author_and_software_defined_assembly 4| author_and_software_defined_assembly > close session > open 5Iov Summary of feedback from opening 5Iov fetched from pdb --- warning | Unable to infer polymer connectivity due to unspecified label_seq_id for residue ""GLY"" near line 18593 notes | Fetching compressed mmCIF 5iov from http://files.rcsb.org/download/5iov.cif Fetching CCD QEM from http://ligand-expo.rcsb.org/reports/Q/QEM/QEM.cif 5iov title: Cryo-EM structure of GluN1/GluN2B NMDA receptor in the glutamate/glycine/Ro25-6981-bound conformation [more info...] Chain information for 5iov #1 --- Chain | Description A C | N-methyl-D-aspartate receptor subunit NR1-8a B D | Ionotropic glutamate receptor subunit NR2B Non-standard residues in 5iov #1 --- QEM — 4-[(1R,2S)-3-(4-benzylpiperidin-1-yl)-1-hydroxy-2-methylpropyl]phenol > show surfaces > hide cartoons > hide atoms > ui mousemode right rotate > ui mousemode right select > ui mousemode right translate > ui mousemode right rotate > save 5Iov.glb Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py"", line 275, in execute cmd.run(cmd_text) File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\save_command\cmd.py"", line 66, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\save_command\cmd.py"", line 79, in provider_save mgr).save(session, path, **provider_kw) File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\gltf\\__init__.py"", line 39, in save gltf.write_gltf(session, path, models, **kw) File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\gltf\gltf.py"", line 336, in write_gltf file = open(filename, 'wb') FileNotFoundError: [Errno 2] No such file or directory: '5Iov.glb' FileNotFoundError: [Errno 2] No such file or directory: '5Iov.glb' File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\gltf\gltf.py"", line 336, in write_gltf file = open(filename, 'wb') See log for complete Python traceback. > save ""G:/My Drive/3D protein models/5Iov.glb"" > save 5Iov.glb Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py"", line 275, in execute cmd.run(cmd_text) File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\save_command\cmd.py"", line 66, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\save_command\cmd.py"", line 79, in provider_save mgr).save(session, path, **provider_kw) File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\gltf\\__init__.py"", line 39, in save gltf.write_gltf(session, path, models, **kw) File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\gltf\gltf.py"", line 336, in write_gltf file = open(filename, 'wb') FileNotFoundError: [Errno 2] No such file or directory: '5Iov.glb' FileNotFoundError: [Errno 2] No such file or directory: '5Iov.glb' File ""C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\gltf\gltf.py"", line 336, in write_gltf file = open(filename, 'wb') See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 419.17 OpenGL renderer: GeForce MX130/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Manufacturer: Dell Inc. Model: Latitude 5590 OS: Microsoft Windows 10 Enterprise (Build 19044) Memory: 17,052,229,632 MaxProcessMemory: 137,438,953,344 CPU: 8 Intel(R) Core(TM) i5-8350U CPU @ 1.70GHz"" PyQt version: 5.12.3 Compiled Qt version: 5.12.4 Runtime Qt version: 5.12.9 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 Babel: 2.8.0 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2020.6.20 chardet: 3.0.4 ChimeraX-AddH: 2.1.3 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.1 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.6.1 ChimeraX-AtomSearch: 2.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 1.0.1 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.0 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.0 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.1 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.0 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-CommandLine: 1.1.3 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.1 ChimeraX-CoreFormats: 1.0 ChimeraX-coulombic: 1.0.1 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-DataFormats: 1.0 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.0 ChimeraX-Hbonds: 2.0 ChimeraX-Help: 1.0 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.0 ChimeraX-ImageFormats: 1.0 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0 ChimeraX-Label: 1.0 ChimeraX-ListInfo: 1.0 ChimeraX-Log: 1.1.1 ChimeraX-LookingGlass: 1.1 ChimeraX-Map: 1.0.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.0 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 1.1 ChimeraX-MDcrds: 2.0 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.0 ChimeraX-mmCIF: 2.2 ChimeraX-MMTF: 2.0 ChimeraX-Modeller: 1.0 ChimeraX-ModelPanel: 1.0 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.0 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0 ChimeraX-OpenCommand: 1.2.1 ChimeraX-PDB: 2.1 ChimeraX-PDBBio: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0 ChimeraX-PubChem: 2.0 ChimeraX-Read-Pbonds: 1.0 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.0 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.2 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SeqView: 2.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.0 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.0 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.0.4 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.0 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.0 ChimeraX-ToolshedUtils: 1.0 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.2.3 ChimeraX-uniprot: 2.0 ChimeraX-ViewDockX: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.3 comtypes: 1.1.7 cxservices: 1.0 cycler: 0.10.0 Cython: 0.29.20 decorator: 4.4.2 distlib: 0.3.1 docutils: 0.16 filelock: 3.0.12 funcparserlib: 0.3.6 gdcm: 2.8.8 grako: 3.16.5 h5py: 2.10.0 html2text: 2020.1.16 idna: 2.10 ihm: 0.16 imagecodecs: 2020.5.30 imagecodecs-lite: 2020.1.31 imagesize: 1.2.0 ipykernel: 5.3.0 ipython: 7.15.0 ipython-genutils: 0.2.0 jedi: 0.17.2 Jinja2: 2.11.2 jupyter-client: 6.1.3 jupyter-core: 4.6.3 kiwisolver: 1.2.0 line-profiler: 2.1.2 lxml: 4.5.1 MarkupSafe: 1.1.1 matplotlib: 3.2.1 msgpack: 1.0.0 netifaces: 0.10.9 networkx: 2.4 numexpr: 2.7.1 numpy: 1.18.5+mkl numpydoc: 1.0.0 openvr: 1.12.501 packaging: 20.4 parso: 0.7.1 pickleshare: 0.7.5 Pillow: 7.1.2 pip: 20.2.2 pkginfo: 1.5.0.1 prompt-toolkit: 3.0.7 psutil: 5.7.0 pycollada: 0.7.1 pydicom: 2.0.0 Pygments: 2.6.1 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 2.4.7 PyQt5-commercial: 5.12.3 PyQt5-sip: 4.19.19 PyQtWebEngine-commercial: 5.12.1 python-dateutil: 2.8.1 pytz: 2020.1 pywin32: 228 pyzmq: 19.0.2 qtconsole: 4.7.4 QtPy: 1.9.0 RandomWords: 0.3.0 requests: 2.24.0 scipy: 1.4.1 setuptools: 49.4.0 sfftk-rw: 0.6.6.dev0 six: 1.15.0 snowballstemmer: 2.0.0 sortedcontainers: 2.2.2 Sphinx: 3.1.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 1.0.3 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.4 suds-jurko: 0.6 tables: 3.6.1 tifffile: 2020.6.3 tinyarray: 1.2.2 tornado: 6.0.4 traitlets: 5.0.4 urllib3: 1.25.10 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.34.2 WMI: 1.5.1 }}} " defect closed normal Input/Output can't reproduce Tom Goddard all ChimeraX