id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 6694 Graphics crash, macOS 10.15.7, Intel Iris Plus Graphics 655 isaphan@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-10.15.7-x86_64-i386-64bit ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. I was decreasing the volume level. Only 2 models opened. cartoon view. Fatal Python error: Aborted Current thread 0x000000011ba38dc0 (most recent call first): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/OpenGL/GL/VERSION/GL_1_5.py"", line 125 in glBufferSubData File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/opengl.py"", line 2676 in update_buffer_data File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py"", line 1847 in update_buffers File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py"", line 1859 in activate_bindings File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py"", line 786 in _draw_geometry File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py"", line 763 in draw_self File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py"", line 752 in draw File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py"", line 1512 in _draw_multiple File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py"", line 1505 in File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/opengl.py"", line 1235 in draw_transparent File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py"", line 1504 in draw_transparent File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py"", line 242 in _draw_scene File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py"", line 165 in draw File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py"", line 73 in draw_new_frame File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py"", line 158 in update_graphics_now File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/map/volume_viewer.py"", line 2226 in moved_marker_cb File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/map/histogram.py"", line 414 in move_marker_cb File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/map/volume_viewer.py"", line 2152 in _drag File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/map/volume_viewer.py"", line 2155 in mouseReleaseEvent File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py"", line 301 in event_loop File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py"", line 867 in init File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py"", line 1018 in File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 87 in _run_code File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 197 in _run_module_as_main Process: ChimeraX [12482] Path: /Applications/ChimeraX-1.3.app/Contents/MacOS/ChimeraX Identifier: edu.ucsf.cgl.ChimeraX Version: 1.3.0 (1.3.0.0) Code Type: X86-64 (Native) Parent Process: ??? [1] Responsible: ChimeraX [12482] User ID: 447249914 Date/Time: 2022-04-22 17:11:06.306 -0700 OS Version: Mac OS X 10.15.7 (19H1824) Report Version: 12 Bridge OS Version: 6.4 (19P4242) Anonymous UUID: D556620D-B394-F785-66D2-A34AB72EE930 Sleep/Wake UUID: 8AE2D08A-EF44-4D63-ADCD-AC4328D49CC4 Time Awake Since Boot: 44000 seconds Time Since Wake: 610 seconds System Integrity Protection: enabled Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread Exception Type: EXC_CRASH (SIGABRT) Exception Codes: 0x0000000000000000, 0x0000000000000000 Exception Note: EXC_CORPSE_NOTIFY Application Specific Information: abort() called Application Specific Signatures: Graphics hardware encountered an error and was reset: 0x00000813 Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread 0 libsystem_kernel.dylib 0x00007fff6d62632a __pthread_kill + 10 1 libsystem_pthread.dylib 0x00007fff6d6e2e60 pthread_kill + 430 2 libsystem_c.dylib 0x00007fff6d53d93e raise + 26 3 libsystem_platform.dylib 0x00007fff6d6d75fd _sigtramp + 29 4 ??? 000000000000000000 0 + 0 5 libsystem_c.dylib 0x00007fff6d5ad808 abort + 120 6 libGPUSupportMercury.dylib 0x00007fff54b140a5 gpusGenerateCrashLog.cold.1 + 95 7 libGPUSupportMercury.dylib 0x00007fff54b0b18f gpusGenerateCrashLog + 89 8 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff2bf7ff18 gpusKillClientExt + 9 9 libGPUSupportMercury.dylib 0x00007fff54b0c6a1 gpusSubmitDataBuffers + 490 10 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff2b1ec096 IntelCommandBuffer::getNew(GLDContextRec*) + 48 11 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff2b1ebea4 intelSubmitCommands + 171 12 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff2b1f269f glrWriteBufferData + 561 13 GLEngine 0x00007fff3e1e1d6c glBufferSubData_Exec + 608 14 libffi.dylib 0x00007fff6b280905 ffi_call_unix64 + 85 15 libffi.dylib 0x00007fff6b280244 ffi_call_int + 694 16 _ctypes.cpython-39-darwin.so 0x0000000117c39ead 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org.python.python 0x000000010d2ef58c call_function + 732 60 org.python.python 0x000000010d2eca92 _PyEval_EvalFrameDefault + 25186 61 org.python.python 0x000000010d2f0283 _PyEval_EvalCode + 2611 62 org.python.python 0x000000010d2178d1 _PyFunction_Vectorcall + 289 63 org.python.python 0x000000010d2ef58c call_function + 732 64 org.python.python 0x000000010d2ecb4b _PyEval_EvalFrameDefault + 25371 65 org.python.python 0x000000010d217948 function_code_fastcall + 104 66 org.python.python 0x000000010d2ef58c call_function + 732 67 org.python.python 0x000000010d2eca92 _PyEval_EvalFrameDefault + 25186 68 org.python.python 0x000000010d2f0283 _PyEval_EvalCode + 2611 69 org.python.python 0x000000010d2178d1 _PyFunction_Vectorcall + 289 70 org.python.python 0x000000010d21998a method_vectorcall + 202 71 org.python.python 0x000000010d2ef58c call_function + 732 72 org.python.python 0x000000010d2ecbe1 _PyEval_EvalFrameDefault + 25521 73 org.python.python 0x000000010d217948 function_code_fastcall + 104 74 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0x000000011dc3ce2e QGuiApplicationPrivate::processMouseEvent(QWindowSystemInterfacePrivate::MouseEvent*) + 3534 114 QtGui 0x000000011dc21d7b QWindowSystemInterface::sendWindowSystemEvents(QFlags) + 219 115 libqcocoa.dylib 0x000000012b4bf260 QCocoaEventDispatcherPrivate::processPostedEvents() + 320 116 libqcocoa.dylib 0x000000012b4bf9c8 QCocoaEventDispatcherPrivate::postedEventsSourceCallback(void*) + 40 117 com.apple.CoreFoundation 0x00007fff3385d682 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17 118 com.apple.CoreFoundation 0x00007fff3385d621 __CFRunLoopDoSource0 + 103 119 com.apple.CoreFoundation 0x00007fff3385d43b __CFRunLoopDoSources0 + 209 120 com.apple.CoreFoundation 0x00007fff3385c16a __CFRunLoopRun + 927 121 com.apple.CoreFoundation 0x00007fff3385b76e CFRunLoopRunSpecific + 462 122 com.apple.HIToolbox 0x00007fff32487aad RunCurrentEventLoopInMode + 292 123 com.apple.HIToolbox 0x00007fff324876e4 ReceiveNextEventCommon + 359 124 com.apple.HIToolbox 0x00007fff32487569 _BlockUntilNextEventMatchingListInModeWithFilter + 64 125 com.apple.AppKit 0x00007fff30ad0659 _DPSNextEvent + 883 126 com.apple.AppKit 0x00007fff30aceea0 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1352 127 com.apple.AppKit 0x00007fff30ac0bae -[NSApplication run] + 658 128 libqcocoa.dylib 0x000000012b4be62f QCocoaEventDispatcher::processEvents(QFlags) + 2495 129 QtCore 0x000000011a963acf QEventLoop::exec(QFlags) + 431 130 QtCore 0x000000011a968042 QCoreApplication::exec() + 130 131 QtWidgets.abi3.so 0x000000011b0ea702 meth_QApplication_exec_(_object*, _object*) + 82 132 org.python.python 0x000000010d25606d cfunction_call + 125 133 org.python.python 0x000000010d21717d _PyObject_MakeTpCall + 365 134 org.python.python 0x000000010d2ef61c call_function + 876 135 org.python.python 0x000000010d2ecab3 _PyEval_EvalFrameDefault + 25219 136 org.python.python 0x000000010d217948 function_code_fastcall + 104 137 org.python.python 0x000000010d21998a method_vectorcall + 202 138 org.python.python 0x000000010d2ef58c call_function + 732 139 org.python.python 0x000000010d2ecab3 _PyEval_EvalFrameDefault + 25219 140 org.python.python 0x000000010d2f0283 _PyEval_EvalCode + 2611 141 org.python.python 0x000000010d2178d1 _PyFunction_Vectorcall + 289 142 org.python.python 0x000000010d2ef58c call_function + 732 143 org.python.python 0x000000010d2ecb4b _PyEval_EvalFrameDefault + 25371 144 org.python.python 0x000000010d2f0283 _PyEval_EvalCode + 2611 145 org.python.python 0x000000010d2e670b PyEval_EvalCode + 139 146 org.python.python 0x000000010d2e3592 builtin_exec + 626 147 org.python.python 0x000000010d25586a cfunction_vectorcall_FASTCALL + 218 148 org.python.python 0x000000010d2ef58c call_function + 732 149 org.python.python 0x000000010d2ecb4b _PyEval_EvalFrameDefault + 25371 150 org.python.python 0x000000010d2f0283 _PyEval_EvalCode + 2611 151 org.python.python 0x000000010d2178d1 _PyFunction_Vectorcall + 289 152 org.python.python 0x000000010d2ef58c call_function + 732 153 org.python.python 0x000000010d2ecb4b _PyEval_EvalFrameDefault + 25371 154 org.python.python 0x000000010d2f0283 _PyEval_EvalCode + 2611 155 org.python.python 0x000000010d2178d1 _PyFunction_Vectorcall + 289 156 org.python.python 0x000000010d355e20 pymain_run_module + 208 157 org.python.python 0x000000010d355537 Py_RunMain + 1431 158 org.python.python 0x000000010d355b3f pymain_main + 223 159 org.python.python 0x000000010d355a4b Py_Main + 43 160 edu.ucsf.cgl.ChimeraX 0x000000010d1cedc8 main + 120 161 libdyld.dylib 0x00007fff6d4decc9 start + 1 Thread 1: 0 libsystem_kernel.dylib 0x00007fff6d622872 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6d6e3425 _pthread_cond_wait + 698 2 libopenblas.0.dylib 0x000000010de9ba9f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff6d6e3109 _pthread_start + 148 4 libsystem_pthread.dylib 0x00007fff6d6deb8b thread_start + 15 Thread 2: 0 libsystem_kernel.dylib 0x00007fff6d622872 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6d6e3425 _pthread_cond_wait + 698 2 libopenblas.0.dylib 0x000000010de9ba9f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff6d6e3109 _pthread_start + 148 4 libsystem_pthread.dylib 0x00007fff6d6deb8b thread_start + 15 Thread 3: 0 libsystem_kernel.dylib 0x00007fff6d622872 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6d6e3425 _pthread_cond_wait + 698 2 libopenblas.0.dylib 0x000000010de9ba9f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff6d6e3109 _pthread_start + 148 4 libsystem_pthread.dylib 0x00007fff6d6deb8b thread_start + 15 Thread 4:: ThreadPoolServiceThread 0 libsystem_kernel.dylib 0x00007fff6d628b86 kevent64 + 10 1 QtWebEngineCore 0x0000000120dcae6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330 2 QtWebEngineCore 0x0000000120dcacc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167 3 QtWebEngineCore 0x0000000120d5362b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 4 QtWebEngineCore 0x0000000120d177cb base::RunLoop::Run() + 395 5 QtWebEngineCore 0x0000000120d5ea94 base::internal::ServiceThread::Run(base::RunLoop*) + 20 6 QtWebEngineCore 0x0000000120d72a7d base::Thread::ThreadMain() + 413 7 QtWebEngineCore 0x0000000120dbbe07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff6d6e3109 _pthread_start + 148 9 libsystem_pthread.dylib 0x00007fff6d6deb8b thread_start + 15 Thread 5:: ThreadPoolBackgroundWorker 0 libsystem_kernel.dylib 0x00007fff6d61fdea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6d620160 mach_msg + 60 2 QtWebEngineCore 0x0000000120dc0492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x0000000120d68778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56 4 QtWebEngineCore 0x0000000120d69150 base::internal::WorkerThread::RunWorker() 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base::Thread::ThreadMain() + 413 7 QtWebEngineCore 0x0000000120dbbe07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff6d6e3109 _pthread_start + 148 9 libsystem_pthread.dylib 0x00007fff6d6deb8b thread_start + 15 Thread 7:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff6d61fdea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6d620160 mach_msg + 60 2 QtWebEngineCore 0x0000000120dc0492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x0000000120dc02cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x0000000120ce81db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x0000000120d5362b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x0000000120d177cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x0000000120d72a7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x0000000120dbbe07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff6d6e3109 _pthread_start + 148 10 libsystem_pthread.dylib 0x00007fff6d6deb8b thread_start + 15 Thread 8:: ThreadPoolForegroundWorker 0 libsystem_kernel.dylib 0x00007fff6d61fdea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6d620160 mach_msg + 60 2 QtWebEngineCore 0x0000000120dc0492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x0000000120d68778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56 4 QtWebEngineCore 0x0000000120d69150 base::internal::WorkerThread::RunWorker() + 1024 5 QtWebEngineCore 0x0000000120d68cd4 base::internal::WorkerThread::RunPooledWorker() + 20 6 QtWebEngineCore 0x0000000120dbbe07 base::(anonymous namespace)::ThreadFunc(void*) + 87 7 libsystem_pthread.dylib 0x00007fff6d6e3109 _pthread_start + 148 8 libsystem_pthread.dylib 0x00007fff6d6deb8b thread_start + 15 Thread 9:: CompositorTileWorker1 0 libsystem_kernel.dylib 0x00007fff6d622872 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6d6e3425 _pthread_cond_wait + 698 2 QtWebEngineCore 0x0000000120db7e18 base::ConditionVariable::Wait() + 104 3 QtWebEngineCore 0x000000012206f5f8 non-virtual thunk to cc::SingleThreadTaskGraphRunner::Run() + 56 4 QtWebEngineCore 0x0000000120dbbe07 base::(anonymous namespace)::ThreadFunc(void*) + 87 5 libsystem_pthread.dylib 0x00007fff6d6e3109 _pthread_start + 148 6 libsystem_pthread.dylib 0x00007fff6d6deb8b thread_start + 15 Thread 10:: Chrome_InProcGpuThread 0 libsystem_kernel.dylib 0x00007fff6d61fdea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6d620160 mach_msg + 60 2 QtWebEngineCore 0x0000000120dc0492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x0000000120ce820f base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 223 4 QtWebEngineCore 0x0000000120d5362b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 5 QtWebEngineCore 0x0000000120d177cb base::RunLoop::Run() + 395 6 QtWebEngineCore 0x0000000120d72a7d base::Thread::ThreadMain() + 413 7 QtWebEngineCore 0x0000000120dbbe07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff6d6e3109 _pthread_start + 148 9 libsystem_pthread.dylib 0x00007fff6d6deb8b thread_start + 15 Thread 11:: Chrome_ChildIOThread 0 libsystem_kernel.dylib 0x00007fff6d628b86 kevent64 + 10 1 QtWebEngineCore 0x0000000120dcae6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330 2 QtWebEngineCore 0x0000000120dcacc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167 3 QtWebEngineCore 0x0000000120d5362b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 4 QtWebEngineCore 0x0000000120d177cb base::RunLoop::Run() + 395 5 QtWebEngineCore 0x0000000120d72a7d base::Thread::ThreadMain() + 413 6 QtWebEngineCore 0x0000000120dbbe07 base::(anonymous namespace)::ThreadFunc(void*) + 87 7 libsystem_pthread.dylib 0x00007fff6d6e3109 _pthread_start + 148 8 libsystem_pthread.dylib 0x00007fff6d6deb8b thread_start + 15 Thread 12:: VizCompositorThread 0 libsystem_kernel.dylib 0x00007fff6d61fdea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6d620160 mach_msg + 60 2 QtWebEngineCore 0x0000000120dc0492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x0000000120dc02cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x0000000120ce81db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x0000000120d5362b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x0000000120d177cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x0000000120d72a7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x0000000120dbbe07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff6d6e3109 _pthread_start + 148 10 libsystem_pthread.dylib 0x00007fff6d6deb8b thread_start + 15 Thread 13:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff6d61fdea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6d620160 mach_msg + 60 2 QtWebEngineCore 0x0000000120dc0492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x0000000120dc02cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x0000000120ce81db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x0000000120d5362b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x0000000120d177cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x0000000120d72a7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x0000000120dbbe07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff6d6e3109 _pthread_start + 148 10 libsystem_pthread.dylib 0x00007fff6d6deb8b thread_start + 15 Thread 14:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff6d61fdea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6d620160 mach_msg + 60 2 QtWebEngineCore 0x0000000120dc0492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x0000000120dc02cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x0000000120ce81db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x0000000120d5362b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x0000000120d177cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x0000000120d72a7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x0000000120dbbe07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff6d6e3109 _pthread_start + 148 10 libsystem_pthread.dylib 0x00007fff6d6deb8b thread_start + 15 Thread 15:: ThreadPoolSingleThreadForegroundBlocking0 0 libsystem_kernel.dylib 0x00007fff6d61fdea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6d620160 mach_msg + 60 2 QtWebEngineCore 0x0000000120dc0492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x0000000120dc02cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x0000000120d6876a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42 5 QtWebEngineCore 0x0000000120d69150 base::internal::WorkerThread::RunWorker() + 1024 6 QtWebEngineCore 0x0000000120d68d34 base::internal::WorkerThread::RunDedicatedWorker() + 20 7 QtWebEngineCore 0x0000000120dbbe07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff6d6e3109 _pthread_start + 148 9 libsystem_pthread.dylib 0x00007fff6d6deb8b thread_start + 15 Thread 16:: MemoryInfra 0 libsystem_kernel.dylib 0x00007fff6d61fdea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6d620160 mach_msg + 60 2 QtWebEngineCore 0x0000000120dc0492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x0000000120dc02cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x0000000120ce81db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x0000000120d5362b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x0000000120d177cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x0000000120d72a7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x0000000120dbbe07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff6d6e3109 _pthread_start + 148 10 libsystem_pthread.dylib 0x00007fff6d6deb8b thread_start + 15 Thread 17:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff6d61fdea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6d620160 mach_msg + 60 2 QtWebEngineCore 0x0000000120dc0492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x0000000120dc02cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x0000000120ce81db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x0000000120d5362b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x0000000120d177cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x0000000120d72a7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x0000000120dbbe07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff6d6e3109 _pthread_start + 148 10 libsystem_pthread.dylib 0x00007fff6d6deb8b thread_start + 15 Thread 18:: com.apple.NSEventThread 0 libsystem_kernel.dylib 0x00007fff6d61fdea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6d620160 mach_msg + 60 2 com.apple.CoreFoundation 0x00007fff3385d825 __CFRunLoopServiceMachPort + 247 3 com.apple.CoreFoundation 0x00007fff3385c2f2 __CFRunLoopRun + 1319 4 com.apple.CoreFoundation 0x00007fff3385b76e CFRunLoopRunSpecific + 462 5 com.apple.AppKit 0x00007fff30c71ea4 _NSEventThread + 132 6 libsystem_pthread.dylib 0x00007fff6d6e3109 _pthread_start + 148 7 libsystem_pthread.dylib 0x00007fff6d6deb8b thread_start + 15 Thread 19:: ThreadPoolSingleThreadSharedBackgroundBlocking1 0 libsystem_kernel.dylib 0x00007fff6d61fdea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6d620160 mach_msg + 60 2 QtWebEngineCore 0x0000000120dc0492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x0000000120dc02cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x0000000120d6876a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42 5 QtWebEngineCore 0x0000000120d68e3d base::internal::WorkerThread::RunWorker() + 237 6 QtWebEngineCore 0x0000000120d68c74 base::internal::WorkerThread::RunBackgroundSharedWorker() + 20 7 QtWebEngineCore 0x0000000120dbbe07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff6d6e3109 _pthread_start + 148 9 libsystem_pthread.dylib 0x00007fff6d6deb8b thread_start + 15 Thread 20: 0 libsystem_pthread.dylib 0x00007fff6d6deb68 start_wqthread + 0 Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000000000000 rbx: 0x000000011ba38dc0 rcx: 0x00007fc615055a58 rdx: 0x0000000000000000 rdi: 0x0000000000000307 rsi: 0x0000000000000006 rbp: 0x00007fc615055a80 rsp: 0x00007fc615055a58 r8: 0x00007fc615055f48 r9: 0xc8686b91bd26b6a8 r10: 0x000000011ba38dc0 r11: 0x0000000000000246 r12: 0x0000000000000307 r13: 0x00007fc61a0ba518 r14: 0x0000000000000006 r15: 0x0000000000000016 rip: 0x00007fff6d62632a rfl: 0x0000000000000246 cr2: 0x0000700007731c74 Logical CPU: 0 Error Code: 0x02000148 Trap Number: 133 Binary Images: 0x10d1ce000 - 0x10d1ceff3 +edu.ucsf.cgl.ChimeraX (1.3.0 - 1.3.0.0) /Applications/ChimeraX-1.3.app/Contents/MacOS/ChimeraX 0x10d1db000 - 0x10d43ffff +org.python.python (3.9.6, [c] 2001-2019 Python Software Foundation. - 3.9.6) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/Python 0x10d59e000 - 0x10d5a0fff +_heapq.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_heapq.cpython-39-darwin.so 0x10d5a8000 - 0x10d5acff7 +binascii.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/binascii.cpython-39-darwin.so 0x10d5b6000 - 0x10d5bbfff +zlib.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/zlib.cpython-39-darwin.so 0x10d5c5000 - 0x10d5c7fff +_bz2.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_bz2.cpython-39-darwin.so 0x10d5d0000 - 0x10d601fff +_lzma.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_lzma.cpython-39-darwin.so 0x10d610000 - 0x10d611fff +grp.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/grp.cpython-39-darwin.so 0x10d61a000 - 0x10d61fff7 +_struct.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_struct.cpython-39-darwin.so 0x10d62c000 - 0x10d634fff +math.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/math.cpython-39-darwin.so 0x10d640000 - 0x10d641ff7 +_bisect.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_bisect.cpython-39-darwin.so 0x10d649000 - 0x10d64afff +_random.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_random.cpython-39-darwin.so 0x10d653000 - 0x10d657fff +_sha512.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_sha512.cpython-39-darwin.so 0x10d660000 - 0x10d665fff +_json.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_json.cpython-39-darwin.so 0x10d66f000 - 0x10da2afd7 +_multiarray_umath.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/core/_multiarray_umath.cpython-39-darwin.so 0x10db63000 - 0x1117156ef +libopenblas.0.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libopenblas.0.dylib 0x1119b3000 - 0x111acaff7 +libgfortran.3.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libgfortran.3.dylib 0x111b38000 - 0x111b6efff +libquadmath.0.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libquadmath.0.dylib 0x111b82000 - 0x111b97ff7 +libgcc_s.1.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libgcc_s.1.dylib 0x117ba7000 - 0x117bb6fff +_datetime.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_datetime.cpython-39-darwin.so 0x117bc7000 - 0x117bdefff +_pickle.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_pickle.cpython-39-darwin.so 0x117bef000 - 0x117bfeff3 +_multiarray_tests.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/core/_multiarray_tests.cpython-39-darwin.so 0x117c17000 - 0x117c19fff +_posixsubprocess.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_posixsubprocess.cpython-39-darwin.so 0x117c22000 - 0x117c26ff7 +select.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/select.cpython-39-darwin.so 0x117c30000 - 0x117c41ff7 +_ctypes.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_ctypes.cpython-39-darwin.so 0x117c58000 - 0x117c5bffb +lapack_lite.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/linalg/lapack_lite.cpython-39-darwin.so 0x117c68000 - 0x117c83ff3 +_umath_linalg.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/linalg/_umath_linalg.cpython-39-darwin.so 0x117c9c000 - 0x117caffff +_pocketfft_internal.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/fft/_pocketfft_internal.cpython-39-darwin.so 0x117cbb000 - 0x117d2effb +mtrand.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/mtrand.cpython-39-darwin.so 0x117d91000 - 0x117db0fff +bit_generator.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/bit_generator.cpython-39-darwin.so 0x117dd3000 - 0x117e06fff +_common.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_common.cpython-39-darwin.so 0x117e24000 - 0x117e2aff7 +_hashlib.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_hashlib.cpython-39-darwin.so 0x117e38000 - 0x117e90fff +libssl.1.1.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/libssl.1.1.dylib 0x117ebf000 - 0x1180d5f4f +libcrypto.1.1.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/libcrypto.1.1.dylib 0x118173000 - 0x118179ff7 +_blake2.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_blake2.cpython-39-darwin.so 0x118183000 - 0x1181d6fff +_bounded_integers.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_bounded_integers.cpython-39-darwin.so 0x118206000 - 0x118215ff3 +_mt19937.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_mt19937.cpython-39-darwin.so 0x118228000 - 0x118237ff7 +_philox.cpython-39-darwin.so (0) 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/System/Library/PrivateFrameworks/MultitouchSupport.framework/Versions/A/MultitouchSupport 0x7fff5acb9000 - 0x7fff5acc3fff com.apple.NetAuth (6.2 - 6.2) /System/Library/PrivateFrameworks/NetAuth.framework/Versions/A/NetAuth 0x7fff5ad85000 - 0x7fff5ada1ff0 com.apple.network.statistics.framework (1.2 - 1) /System/Library/PrivateFrameworks/NetworkStatistics.framework/Versions/A/NetworkStatistics 0x7fff5b6db000 - 0x7fff5b726ffb com.apple.OTSVG (1.0 - 643.1.5.7) /System/Library/PrivateFrameworks/OTSVG.framework/Versions/A/OTSVG 0x7fff5c943000 - 0x7fff5c94eff2 com.apple.PerformanceAnalysis (1.243.3 - 243.3) /System/Library/PrivateFrameworks/PerformanceAnalysis.framework/Versions/A/PerformanceAnalysis 0x7fff5c94f000 - 0x7fff5c977ffb com.apple.persistentconnection (1.0 - 1.0) /System/Library/PrivateFrameworks/PersistentConnection.framework/Versions/A/PersistentConnection 0x7fff5e3f2000 - 0x7fff5e422ff7 com.apple.pluginkit.framework (1.0 - 1) /System/Library/PrivateFrameworks/PlugInKit.framework/Versions/A/PlugInKit 0x7fff5e44d000 - 0x7fff5e460ffc com.apple.PowerLog (1.0 - 1) /System/Library/PrivateFrameworks/PowerLog.framework/Versions/A/PowerLog 0x7fff5f2dc000 - 0x7fff5f336ff6 com.apple.ProtectedCloudStorage (1.0 - 1) /System/Library/PrivateFrameworks/ProtectedCloudStorage.framework/Versions/A/ProtectedCloudStorage 0x7fff5f337000 - 0x7fff5f350ffb com.apple.ProtocolBuffer (1 - 274.24.9.16.3) /System/Library/PrivateFrameworks/ProtocolBuffer.framework/Versions/A/ProtocolBuffer 0x7fff5f462000 - 0x7fff5f465ff4 com.apple.QuickLookNonBaseSystem (1.0 - 1) /System/Library/PrivateFrameworks/QuickLookNonBaseSystem.framework/Versions/A/QuickLookNonBaseSystem 0x7fff5f466000 - 0x7fff5f489ff0 com.apple.quicklook.QuickLookSupport (1.0 - 1) /System/Library/PrivateFrameworks/QuickLookSupport.framework/Versions/A/QuickLookSupport 0x7fff5f4d0000 - 0x7fff5f549ff3 com.apple.Rapport (1.9.5 - 195.2) /System/Library/PrivateFrameworks/Rapport.framework/Versions/A/Rapport 0x7fff5f7b0000 - 0x7fff5f7d9ff1 com.apple.RemoteViewServices (2.0 - 148) /System/Library/PrivateFrameworks/RemoteViewServices.framework/Versions/A/RemoteViewServices 0x7fff5f93e000 - 0x7fff5f979ff0 com.apple.RunningBoardServices (1.0 - 223.140.2) /System/Library/PrivateFrameworks/RunningBoardServices.framework/Versions/A/RunningBoardServices 0x7fff6125a000 - 0x7fff6125dff5 com.apple.SecCodeWrapper (4.0 - 448.100.6) /System/Library/PrivateFrameworks/SecCodeWrapper.framework/Versions/A/SecCodeWrapper 0x7fff613d0000 - 0x7fff614f7fff com.apple.Sharing (1526.37 - 1526.37) /System/Library/PrivateFrameworks/Sharing.framework/Versions/A/Sharing 0x7fff61550000 - 0x7fff6156eff2 com.apple.shortcut (2.16 - 106) /System/Library/PrivateFrameworks/Shortcut.framework/Versions/A/Shortcut 0x7fff6156f000 - 0x7fff6158fff5 com.apple.sidecar-core (1.0 - 209.40.4) /System/Library/PrivateFrameworks/SidecarCore.framework/Versions/A/SidecarCore 0x7fff61590000 - 0x7fff615a2ff0 com.apple.sidecar-ui (1.0 - 209.40.4) /System/Library/PrivateFrameworks/SidecarUI.framework/Versions/A/SidecarUI 0x7fff6290c000 - 0x7fff62c02fff com.apple.SkyLight (1.600.0 - 451.6) /System/Library/PrivateFrameworks/SkyLight.framework/Versions/A/SkyLight 0x7fff6344f000 - 0x7fff6345dffb com.apple.SpeechRecognitionCore (6.0.91.2 - 6.0.91.2) /System/Library/PrivateFrameworks/SpeechRecognitionCore.framework/Versions/A/SpeechRecognitionCore 0x7fff63b39000 - 0x7fff63b7aff9 com.apple.StreamingZip (1.0 - 1) /System/Library/PrivateFrameworks/StreamingZip.framework/Versions/A/StreamingZip 0x7fff63c91000 - 0x7fff63c9aff7 com.apple.SymptomDiagnosticReporter (1.0 - 1238.120.2) /System/Library/PrivateFrameworks/SymptomDiagnosticReporter.framework/Versions/A/SymptomDiagnosticReporter 0x7fff63f51000 - 0x7fff63f61ff3 com.apple.TCC (1.0 - 1) /System/Library/PrivateFrameworks/TCC.framework/Versions/A/TCC 0x7fff64486000 - 0x7fff6454cff0 com.apple.TextureIO (3.10.9 - 3.10.9) /System/Library/PrivateFrameworks/TextureIO.framework/Versions/A/TextureIO 0x7fff6471c000 - 0x7fff64974ff0 com.apple.UIFoundation (1.0 - 662) /System/Library/PrivateFrameworks/UIFoundation.framework/Versions/A/UIFoundation 0x7fff64a0b000 - 0x7fff64a11ffe com.apple.URLFormatting (119 - 119.18) /System/Library/PrivateFrameworks/URLFormatting.framework/Versions/A/URLFormatting 0x7fff653a3000 - 0x7fff653c3ffc com.apple.UserManagement (1.0 - 1) /System/Library/PrivateFrameworks/UserManagement.framework/Versions/A/UserManagement 0x7fff6616f000 - 0x7fff6625aff2 com.apple.ViewBridge (468 - 468) /System/Library/PrivateFrameworks/ViewBridge.framework/Versions/A/ViewBridge 0x7fff66400000 - 0x7fff66401fff com.apple.WatchdogClient.framework (1.0 - 67.120.2) /System/Library/PrivateFrameworks/WatchdogClient.framework/Versions/A/WatchdogClient 0x7fff67031000 - 0x7fff67034ffa com.apple.dt.XCTTargetBootstrap (1.0 - 16091) /System/Library/PrivateFrameworks/XCTTargetBootstrap.framework/Versions/A/XCTTargetBootstrap 0x7fff670ae000 - 0x7fff670bcff5 com.apple.audio.caulk (1.0 - 32.3) /System/Library/PrivateFrameworks/caulk.framework/Versions/A/caulk 0x7fff673fe000 - 0x7fff67400ff3 com.apple.loginsupport (1.0 - 1) /System/Library/PrivateFrameworks/login.framework/Versions/A/Frameworks/loginsupport.framework/Versions/A/loginsupport 0x7fff67401000 - 0x7fff67414ffd com.apple.login (3.0 - 3.0) /System/Library/PrivateFrameworks/login.framework/Versions/A/login 0x7fff67446000 - 0x7fff67452ffd com.apple.perfdata (1.0 - 51.100.6) /System/Library/PrivateFrameworks/perfdata.framework/Versions/A/perfdata 0x7fff69ed7000 - 0x7fff69ee3ff9 libAudioStatistics.dylib (1104.104) /usr/lib/libAudioStatistics.dylib 0x7fff69ee4000 - 0x7fff69f17ffa libAudioToolboxUtility.dylib (1104.104) /usr/lib/libAudioToolboxUtility.dylib 0x7fff69f1e000 - 0x7fff69f52fff libCRFSuite.dylib (48) /usr/lib/libCRFSuite.dylib 0x7fff69f55000 - 0x7fff69f5ffff libChineseTokenizer.dylib (34) /usr/lib/libChineseTokenizer.dylib 0x7fff69f60000 - 0x7fff69fe8fff libCoreStorage.dylib (551.0.1) /usr/lib/libCoreStorage.dylib 0x7fff69feb000 - 0x7fff69fedff7 libDiagnosticMessagesClient.dylib (112) /usr/lib/libDiagnosticMessagesClient.dylib 0x7fff6a033000 - 0x7fff6a1eaffb libFosl_dynamic.dylib (100.4) /usr/lib/libFosl_dynamic.dylib 0x7fff6a211000 - 0x7fff6a217ff3 libIOReport.dylib (54) /usr/lib/libIOReport.dylib 0x7fff6a2f9000 - 0x7fff6a300fff libMatch.1.dylib (36) /usr/lib/libMatch.1.dylib 0x7fff6a32f000 - 0x7fff6a34fff7 libMobileGestalt.dylib (826.140.5) /usr/lib/libMobileGestalt.dylib 0x7fff6a3cf000 - 0x7fff6a4acff7 libSMC.dylib (20) /usr/lib/libSMC.dylib 0x7fff6a4c1000 - 0x7fff6a4c2fff libSystem.B.dylib (1281.100.1) /usr/lib/libSystem.B.dylib 0x7fff6a4c3000 - 0x7fff6a54eff7 libTelephonyUtilDynamic.dylib (5017.1) /usr/lib/libTelephonyUtilDynamic.dylib 0x7fff6a54f000 - 0x7fff6a550fff libThaiTokenizer.dylib (3) /usr/lib/libThaiTokenizer.dylib 0x7fff6a568000 - 0x7fff6a57efff libapple_nghttp2.dylib (1.39.2) /usr/lib/libapple_nghttp2.dylib 0x7fff6a5b3000 - 0x7fff6a625ff7 libarchive.2.dylib (72.140.2) /usr/lib/libarchive.2.dylib 0x7fff6a626000 - 0x7fff6a6bffe5 libate.dylib (3.0.1) /usr/lib/libate.dylib 0x7fff6a6c3000 - 0x7fff6a6c3ff3 libauto.dylib (187) /usr/lib/libauto.dylib 0x7fff6a6c4000 - 0x7fff6a788ffe libboringssl.dylib (283.120.1) /usr/lib/libboringssl.dylib 0x7fff6a789000 - 0x7fff6a799ffb libbsm.0.dylib (60.100.1) /usr/lib/libbsm.0.dylib 0x7fff6a79a000 - 0x7fff6a7a6fff libbz2.1.0.dylib (44) /usr/lib/libbz2.1.0.dylib 0x7fff6a7a7000 - 0x7fff6a7f9fff libc++.1.dylib (902.1) /usr/lib/libc++.1.dylib 0x7fff6a7fa000 - 0x7fff6a80fffb libc++abi.dylib (902) /usr/lib/libc++abi.dylib 0x7fff6a810000 - 0x7fff6a810fff libcharset.1.dylib (59) /usr/lib/libcharset.1.dylib 0x7fff6a811000 - 0x7fff6a822fff libcmph.dylib (8) /usr/lib/libcmph.dylib 0x7fff6a823000 - 0x7fff6a83afd7 libcompression.dylib (87.1) /usr/lib/libcompression.dylib 0x7fff6ab14000 - 0x7fff6ab2aff7 libcoretls.dylib (167) /usr/lib/libcoretls.dylib 0x7fff6ab2b000 - 0x7fff6ab2cfff libcoretls_cfhelpers.dylib (167) /usr/lib/libcoretls_cfhelpers.dylib 0x7fff6b0d6000 - 0x7fff6b0e1fff libcsfde.dylib (551.0.1) /usr/lib/libcsfde.dylib 0x7fff6b0e9000 - 0x7fff6b148ff7 libcups.2.dylib (483.9) /usr/lib/libcups.2.dylib 0x7fff6b252000 - 0x7fff6b252fff libenergytrace.dylib (21) /usr/lib/libenergytrace.dylib 0x7fff6b253000 - 0x7fff6b26dff7 libexpat.1.dylib (19.60.3) /usr/lib/libexpat.1.dylib 0x7fff6b27b000 - 0x7fff6b27dfff libfakelink.dylib (149.1) /usr/lib/libfakelink.dylib 0x7fff6b27e000 - 0x7fff6b283f57 libffi.dylib (26) /usr/lib/libffi.dylib 0x7fff6b28c000 - 0x7fff6b291fff libgermantok.dylib (24) /usr/lib/libgermantok.dylib 0x7fff6b292000 - 0x7fff6b29bff7 libheimdal-asn1.dylib (564.140.8) /usr/lib/libheimdal-asn1.dylib 0x7fff6b29c000 - 0x7fff6b38cfff libiconv.2.dylib (59) /usr/lib/libiconv.2.dylib 0x7fff6b38d000 - 0x7fff6b5e4fff libicucore.A.dylib (64260.0.1) /usr/lib/libicucore.A.dylib 0x7fff6b5fe000 - 0x7fff6b5fffff liblangid.dylib (133) /usr/lib/liblangid.dylib 0x7fff6b600000 - 0x7fff6b618ff3 liblzma.5.dylib (16) /usr/lib/liblzma.5.dylib 0x7fff6b630000 - 0x7fff6b6d7ff7 libmecab.dylib (883.11) /usr/lib/libmecab.dylib 0x7fff6b6d8000 - 0x7fff6b93aff1 libmecabra.dylib (883.11) /usr/lib/libmecabra.dylib 0x7fff6bca7000 - 0x7fff6bcd6fff libncurses.5.4.dylib (57) /usr/lib/libncurses.5.4.dylib 0x7fff6be06000 - 0x7fff6c282ff5 libnetwork.dylib (1880.120.4) /usr/lib/libnetwork.dylib 0x7fff6c283000 - 0x7fff6c29afff libnetworkextension.dylib (1095.140.2) /usr/lib/libnetworkextension.dylib 0x7fff6c323000 - 0x7fff6c356fde libobjc.A.dylib (787.1) /usr/lib/libobjc.A.dylib 0x7fff6c369000 - 0x7fff6c36dfff libpam.2.dylib (25.100.1) /usr/lib/libpam.2.dylib 0x7fff6c370000 - 0x7fff6c3a6fff libpcap.A.dylib (89.120.2) /usr/lib/libpcap.A.dylib 0x7fff6c3e6000 - 0x7fff6c3f4ff9 libperfcheck.dylib (37.100.2) /usr/lib/libperfcheck.dylib 0x7fff6c3f5000 - 0x7fff6c3f8ff3 libpmenergy.dylib (214.120.2) /usr/lib/libpmenergy.dylib 0x7fff6c3f9000 - 0x7fff6c3fbfff libpmsample.dylib (214.120.2) /usr/lib/libpmsample.dylib 0x7fff6c42a000 - 0x7fff6c442fff libresolv.9.dylib (67.40.1) /usr/lib/libresolv.9.dylib 0x7fff6c444000 - 0x7fff6c488ff7 libsandbox.1.dylib (1217.141.8) /usr/lib/libsandbox.1.dylib 0x7fff6c49c000 - 0x7fff6c49dff7 libspindump.dylib (281.3) /usr/lib/libspindump.dylib 0x7fff6c49e000 - 0x7fff6c688ff7 libsqlite3.dylib (308.6) /usr/lib/libsqlite3.dylib 0x7fff6c87e000 - 0x7fff6c8d8ff8 libusrtcp.dylib (1880.120.4) /usr/lib/libusrtcp.dylib 0x7fff6c8d9000 - 0x7fff6c8dcffb libutil.dylib (57.140.1) /usr/lib/libutil.dylib 0x7fff6c8dd000 - 0x7fff6c8eafff libxar.1.dylib (425.7) /usr/lib/libxar.1.dylib 0x7fff6c8f0000 - 0x7fff6c9d2fff libxml2.2.dylib (33.9) /usr/lib/libxml2.2.dylib 0x7fff6c9d6000 - 0x7fff6c9fefff libxslt.1.dylib (16.12) /usr/lib/libxslt.1.dylib 0x7fff6c9ff000 - 0x7fff6ca11ff3 libz.1.dylib (76) /usr/lib/libz.1.dylib 0x7fff6d2c0000 - 0x7fff6d2c5ff3 libcache.dylib (83) /usr/lib/system/libcache.dylib 0x7fff6d2c6000 - 0x7fff6d2d1fff libcommonCrypto.dylib (60165.120.1) /usr/lib/system/libcommonCrypto.dylib 0x7fff6d2d2000 - 0x7fff6d2d9fff libcompiler_rt.dylib (101.2) /usr/lib/system/libcompiler_rt.dylib 0x7fff6d2da000 - 0x7fff6d2e3ff7 libcopyfile.dylib (166.40.1) /usr/lib/system/libcopyfile.dylib 0x7fff6d2e4000 - 0x7fff6d376fdb libcorecrypto.dylib (866.140.2) /usr/lib/system/libcorecrypto.dylib 0x7fff6d483000 - 0x7fff6d4c3ff0 libdispatch.dylib (1173.100.2) /usr/lib/system/libdispatch.dylib 0x7fff6d4c4000 - 0x7fff6d4fafff libdyld.dylib (750.7) /usr/lib/system/libdyld.dylib 0x7fff6d4fb000 - 0x7fff6d4fbffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib 0x7fff6d4fc000 - 0x7fff6d508ff3 libkxld.dylib (6153.141.59) /usr/lib/system/libkxld.dylib 0x7fff6d509000 - 0x7fff6d509ff7 liblaunch.dylib (1738.140.3) /usr/lib/system/liblaunch.dylib 0x7fff6d50a000 - 0x7fff6d50fff7 libmacho.dylib (959.0.1) /usr/lib/system/libmacho.dylib 0x7fff6d510000 - 0x7fff6d512ff3 libquarantine.dylib (110.40.6) /usr/lib/system/libquarantine.dylib 0x7fff6d513000 - 0x7fff6d514ff7 libremovefile.dylib (48) /usr/lib/system/libremovefile.dylib 0x7fff6d515000 - 0x7fff6d52cff3 libsystem_asl.dylib (377.60.4) /usr/lib/system/libsystem_asl.dylib 0x7fff6d52d000 - 0x7fff6d52dff7 libsystem_blocks.dylib (74) /usr/lib/system/libsystem_blocks.dylib 0x7fff6d52e000 - 0x7fff6d5b5fff libsystem_c.dylib (1353.100.4) /usr/lib/system/libsystem_c.dylib 0x7fff6d5b6000 - 0x7fff6d5b9ffb libsystem_configuration.dylib (1061.141.2) /usr/lib/system/libsystem_configuration.dylib 0x7fff6d5ba000 - 0x7fff6d5bdfff libsystem_coreservices.dylib (114.1) /usr/lib/system/libsystem_coreservices.dylib 0x7fff6d5be000 - 0x7fff6d5c6fff libsystem_darwin.dylib (1353.100.4) /usr/lib/system/libsystem_darwin.dylib 0x7fff6d5c7000 - 0x7fff6d5cefff libsystem_dnssd.dylib (1096.100.3) /usr/lib/system/libsystem_dnssd.dylib 0x7fff6d5cf000 - 0x7fff6d5d0ffb libsystem_featureflags.dylib (17) /usr/lib/system/libsystem_featureflags.dylib 0x7fff6d5d1000 - 0x7fff6d61eff7 libsystem_info.dylib (538) /usr/lib/system/libsystem_info.dylib 0x7fff6d61f000 - 0x7fff6d64bff7 libsystem_kernel.dylib (6153.141.59) /usr/lib/system/libsystem_kernel.dylib 0x7fff6d64c000 - 0x7fff6d693fff libsystem_m.dylib (3178) /usr/lib/system/libsystem_m.dylib 0x7fff6d694000 - 0x7fff6d6bbfff libsystem_malloc.dylib (283.100.6) /usr/lib/system/libsystem_malloc.dylib 0x7fff6d6bc000 - 0x7fff6d6c9ffb libsystem_networkextension.dylib (1095.140.2) /usr/lib/system/libsystem_networkextension.dylib 0x7fff6d6ca000 - 0x7fff6d6d3ff7 libsystem_notify.dylib (241.100.2) /usr/lib/system/libsystem_notify.dylib 0x7fff6d6d4000 - 0x7fff6d6dcfef libsystem_platform.dylib (220.100.1) /usr/lib/system/libsystem_platform.dylib 0x7fff6d6dd000 - 0x7fff6d6e7fff libsystem_pthread.dylib (416.100.3) /usr/lib/system/libsystem_pthread.dylib 0x7fff6d6e8000 - 0x7fff6d6ecff3 libsystem_sandbox.dylib (1217.141.8) /usr/lib/system/libsystem_sandbox.dylib 0x7fff6d6ed000 - 0x7fff6d6effff libsystem_secinit.dylib (62.100.2) /usr/lib/system/libsystem_secinit.dylib 0x7fff6d6f0000 - 0x7fff6d6f7ffb libsystem_symptoms.dylib (1238.120.2) /usr/lib/system/libsystem_symptoms.dylib 0x7fff6d6f8000 - 0x7fff6d70eff2 libsystem_trace.dylib (1147.120.1) /usr/lib/system/libsystem_trace.dylib 0x7fff6d710000 - 0x7fff6d715ff7 libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib 0x7fff6d716000 - 0x7fff6d74bffe libxpc.dylib (1738.140.3) /usr/lib/system/libxpc.dylib External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 5 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 113197 thread_create: 0 thread_set_state: 0 VM Region Summary: ReadOnly portion of Libraries: Total=1.0G resident=0K(0%) swapped_out_or_unallocated=1.0G(100%) Writable regions: Total=1.5G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.5G(100%) VIRTUAL REGION REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Accelerate framework 512K 4 Activity Tracing 256K 1 CG backing stores 440K 2 CG image 340K 33 CoreAnimation 556K 70 CoreGraphics 8K 1 CoreImage 20K 4 CoreUI image data 1368K 24 Foundation 4K 1 Kernel Alloc Once 8K 1 MALLOC 789.3M 2275 MALLOC guard page 32K 7 MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated) MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated) Mach message 24K 2 OpenGL GLSL 384K 4 STACK GUARD 80K 20 Stack 130.7M 21 Stack Guard 56.0M 1 VM_ALLOCATE 193.8M 114 VM_ALLOCATE (reserved) 32.0M 1 reserved VM address space (unallocated) __DATA 53.6M 539 __DATA_CONST 44K 4 __FONT_DATA 4K 1 __GLSLBUILTINS 5176K 1 __LINKEDIT 483.2M 149 __OBJC_RO 32.3M 1 __OBJC_RW 1908K 2 __TEXT 565.5M 508 __UNICODE 564K 1 mapped file 395.6M 57 shared memory 2856K 26 =========== ======= ======= TOTAL 3.1G 3877 TOTAL, minus reserved VM space 2.7G 3877 ===== Log before crash start ===== UCSF ChimeraX version: 1.3 (2021-12-08) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open > /Users/iphan/Documents/ssgcid/CryoEM/gln_synthetase/pnnl_datasets/10_2021/refine_3.1A_double_unit/PaGS_chainA_isolde.pdb Chain information for PaGS_chainA_isolde.pdb #1 --- Chain | Description A | No description available > open > /Users/iphan/Documents/ssgcid/CryoEM/gln_synthetase/pnnl_datasets/10_2021/refine_3.1A_double_unit/PaGS_2.8A_map.mrc Opened PaGS_2.8A_map.mrc as #2, grid size 256,256,256, pixel 1.36, shown at level 0.256, step 1, values float32 > volume #2 color #b2b2b27f > ui tool show ""Side View"" > select #1 7344 atoms, 7440 bonds, 477 residues, 1 model selected > lighting shadows true > lighting shadows false > lighting shadows true > lighting shadows false > lighting shadows true > lighting shadows false > lighting full > lighting flat > lighting shadows true intensity 0.5 > lighting flat > lighting full > lighting soft > lighting simple > lighting shadows true > lighting shadows false > lighting simple > lighting soft > lighting simple > lighting flat > lighting simple > graphics silhouettes false > graphics silhouettes true > graphics silhouettes false > cofr sel > view sel > volume #2 level 0.1863 ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.3 (2021-12-08) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open > /Users/iphan/Documents/ssgcid/CryoEM/gln_synthetase/pnnl_datasets/10_2021/refine_3.1A_double_unit/PaGS_chainA_isolde.pdb Chain information for PaGS_chainA_isolde.pdb #1 --- Chain | Description A | No description available > open > /Users/iphan/Documents/ssgcid/CryoEM/gln_synthetase/pnnl_datasets/10_2021/refine_3.1A_double_unit/PaGS_2.8A_map.mrc Opened PaGS_2.8A_map.mrc as #2, grid size 256,256,256, pixel 1.36, shown at level 0.256, step 1, values float32 > volume #2 level 0.2564 > volume #2 level 0.2707 > volume #2 level 0.2683 OpenGL version: 4.1 INTEL-14.7.23 OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 655 OpenGL vendor: Intel Inc.Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro15,2 Processor Name: Quad-Core Intel Core i7 Processor Speed: 2.7 GHz Number of Processors: 1 Total Number of Cores: 4 L2 Cache (per Core): 256 KB L3 Cache: 8 MB Hyper-Threading Technology: Enabled Memory: 16 GB Boot ROM Version: 1731.100.130.0.0 (iBridge: 19.16.14242.0.0,0) Software: System Software Overview: System Version: macOS 10.15.7 (19H1824) Kernel Version: Darwin 19.6.0 Time since boot: 1 day 1:29 Graphics/Displays: Intel Iris Plus Graphics 655: Chipset Model: Intel Iris Plus Graphics 655 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x3ea5 Revision ID: 0x0001 Metal: Supported, feature set macOS GPUFamily2 v1 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Framebuffer Depth: 30-Bit Color (ARGB2101010) Mirror: On Mirror Status: Hardware Mirror Online: Yes Automatically Adjust Brightness: No Connection Type: Internal BenQ SW2700: Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition) UI Looks like: 2560 x 1440 @ 60 Hz Framebuffer Depth: 30-Bit Color (ARGB2101010) Display Serial Number: MAK04012SL0 Main Display: Yes Mirror: On Mirror Status: Master Mirror Online: Yes Rotation: Supported Automatically Adjust Brightness: No Connection Type: DVI or HDMI Adapter Firmware Version: 8.63 Locale: (None, 'UTF-8') PyQt5 5.15.2, Qt 5.15.2 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.2 Babel: 2.9.1 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2021.5.30 cftime: 1.5.1.1 charset-normalizer: 2.0.9 ChimeraX-AddCharge: 1.2.2 ChimeraX-AddH: 2.1.11 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.2.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.31 ChimeraX-AtomicLibrary: 4.2 ChimeraX-AtomSearch: 2.0 ChimeraX-AtomSearchLibrary: 1.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.0 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.6.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.2 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.2 ChimeraX-Clipper: 0.17.0 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5 ChimeraX-CommandLine: 1.1.5 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.3 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1.5 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.1.2 ChimeraX-Help: 1.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ISOLDE: 1.3 ChimeraX-ItemsInspection: 1.0 ChimeraX-Label: 1.1 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.4 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 2.0.4 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.4 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.2.6 ChimeraX-ModelPanel: 1.2.1 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.2 ChimeraX-OpenCommand: 1.7 ChimeraX-PDB: 2.6.5 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.4.6 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.1 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.6.1 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1 ChimeraX-ToolshedUtils: 1.2 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.13.7 ChimeraX-uniprot: 2.2 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.0.1 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.4 cxservices: 1.1 cycler: 0.11.0 Cython: 0.29.24 decorator: 5.1.0 docutils: 0.17.1 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 3.6.0 html2text: 2020.1.16 idna: 3.3 ihm: 0.21 imagecodecs: 2021.4.28 imagesize: 1.3.0 ipykernel: 5.5.5 ipython: 7.23.1 ipython-genutils: 0.2.0 jedi: 0.18.0 Jinja2: 3.0.1 jupyter-client: 6.1.12 jupyter-core: 4.9.1 kiwisolver: 1.3.2 lxml: 4.6.3 lz4: 3.1.3 MarkupSafe: 2.0.1 matplotlib: 3.4.3 matplotlib-inline: 0.1.3 msgpack: 1.0.2 netCDF4: 1.5.7 networkx: 2.6.3 numexpr: 2.8.0 numpy: 1.21.2 openvr: 1.16.801 packaging: 21.0 ParmEd: 3.2.0 parso: 0.8.3 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 8.3.2 pip: 21.2.4 pkginfo: 1.7.1 prompt-toolkit: 3.0.23 psutil: 5.8.0 ptyprocess: 0.7.0 pycollada: 0.7.1 pydicom: 2.1.2 Pygments: 2.10.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.6 PyQt5-commercial: 5.15.2 PyQt5-sip: 12.8.1 PyQtWebEngine-commercial: 5.15.2 python-dateutil: 2.8.2 pytz: 2021.3 pyzmq: 22.3.0 qtconsole: 5.1.1 QtPy: 1.11.3 RandomWords: 0.3.0 requests: 2.26.0 scipy: 1.7.1 setuptools: 57.5.0 sfftk-rw: 0.7.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 4.2.0 sphinx-autodoc-typehints: 1.12.0 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-jurko: 0.6 tifffile: 2021.4.8 tinyarray: 1.2.3 tornado: 6.1 traitlets: 5.1.1 urllib3: 1.26.7 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.37.0 wheel-filename: 1.3.0 }}} " defect closed normal Graphics nonchimerax all ChimeraX