id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 6601 Needleman-Wunsch failure chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-10.16-x86_64-i386-64bit ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Thread 0x00000003183d6000 (most recent call first): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 316 in wait File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 574 in wait File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 1284 in run File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 973 in _bootstrap_inner File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py"", line 930 in _bootstrap Current thread 0x0000000204b8c600 (most recent call first): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/atomic/molobject.py"", line 2008 in add_modified File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/seqalign/alignment.py"", line 736 in _set_residue_attributes File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/seqalign/alignment.py"", line 565 in prematched_assoc_structure File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/seqalign/alignment.py"", line 222 in do_assoc File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/seqalign/alignment.py"", line 303 in associate File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/seqalign/cmd.py"", line 238 in seqalign_chain File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/commands/cli.py"", line 2856 in run File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/commands/run.py"", line 36 in run File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/show_sequences/tool.py"", line 64 in show_seqs File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py"", line 301 in event_loop File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py"", line 867 in init File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py"", line 1018 in File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 87 in _run_code File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 197 in _run_module_as_main {""app_name"":""ChimeraX"",""timestamp"":""2022-04-13 09:44:16.00 +0200"",""app_version"":""1.3.0"",""slice_uuid"":""9596eff5-d2be-396c-9c4e-6177235c3dae"",""build_version"":""1.3.0.0"",""platform"":1,""bundleID"":""edu.ucsf.cgl.ChimeraX"",""share_with_app_devs"":0,""is_first_party"":0,""bug_type"":""309"",""os_version"":""macOS 12.3.1 (21E258)"",""incident_id"":""21677E76-3D54-4C91-8B73-B09D91B977FB"",""name"":""ChimeraX""} { ""uptime"" : 61000, ""procLaunch"" : ""2022-04-13 09:35:54.2945 +0200"", ""procRole"" : ""Foreground"", ""version"" : 2, ""userID"" : 501, ""deployVersion"" : 210, ""modelCode"" : ""MacBookPro18,2"", ""procStartAbsTime"" : 1458991143894, ""coalitionID"" : 27257, ""osVersion"" : { ""train"" : ""macOS 12.3.1"", ""build"" : ""21E258"", ""releaseType"" : ""User"" }, ""captureTime"" : ""2022-04-13 09:44:14.3170 +0200"", ""incident"" : ""21677E76-3D54-4C91-8B73-B09D91B977FB"", ""bug_type"" : ""309"", ""pid"" : 79506, ""procExitAbsTime"" : 1470991455538, ""translated"" : true, ""cpuType"" : ""X86-64"", ""procName"" : ""ChimeraX"", ""procPath"" : ""\/Applications\/ChimeraX-1.3.app\/Contents\/MacOS\/ChimeraX"", ""bundleInfo"" : {""CFBundleShortVersionString"":""1.3.0"",""CFBundleVersion"":""1.3.0.0"",""CFBundleIdentifier"":""edu.ucsf.cgl.ChimeraX""}, ""storeInfo"" : {""deviceIdentifierForVendor"":""E7585361-00CA-53AB-89DD-F327B7C07C7B"",""thirdParty"":true}, ""parentProc"" : ""launchd"", ""parentPid"" : 1, ""coalitionName"" : ""edu.ucsf.cgl.ChimeraX"", ""crashReporterKey"" : ""5B7A031A-56B5-B567-60F5-AA9B5A419D85"", ""wakeTime"" : 1502, ""sleepWakeUUID"" : ""15E227EB-8424-45DD-9BD6-7998ED810DE6"", ""sip"" : ""enabled"", ""vmRegionInfo"" : ""0x195e66 is not in any region. Bytes before following region: 4368331162\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 10478d000-10478e000 [ 4K] r-x\/r-x SM=COW ...acOS\/ChimeraX"", ""isCorpse"" : 1, ""exception"" : {""codes"":""0x0000000000000001, 0x0000000000195e66"",""rawCodes"":[1,1662566],""type"":""EXC_BAD_ACCESS"",""signal"":""SIGSEGV"",""subtype"":""KERN_INVALID_ADDRESS at 0x0000000000195e66""}, ""vmregioninfo"" : ""0x195e66 is not in any region. Bytes before following region: 4368331162\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 10478d000-10478e000 [ 4K] r-x\/r-x SM=COW ...acOS\/ChimeraX"", ""extMods"" : {""caller"":{""thread_create"":0,""thread_set_state"":0,""task_for_pid"":0},""system"":{""thread_create"":0,""thread_set_state"":0,""task_for_pid"":0},""targeted"":{""thread_create"":0,""thread_set_state"":0,""task_for_pid"":0},""warnings"":0}, ""faultingThread"" : 0, ""threads"" : [{""triggered"":true,""id"":1342695,""threadState"":{""flavor"":""x86_THREAD_STATE"",""rbp"":{""value"":2113700750703540921},""r12"":{""value"":259},""rosetta"":{""tmp2"":{""value"":140703591886852},""tmp1"":{""value"":140706014144788},""tmp0"":{""value"":18446744073709551615}},""rbx"":{""value"":8669152768,""symbolLocation"":0,""symbol"":""_main_thread""},""r8"":{""value"":11},""r15"":{""value"":22},""r10"":{""value"":8669152768,""symbolLocation"":0,""symbol"":""_main_thread""},""rdx"":{""value"":0},""rdi"":{""value"":2113700750703540921},""r9"":{""value"":2113700750703540921},""r13"":{""value"":140686118668112},""rflags"":{""value"":643},""rax"":{""value"":0},""rsp"":{""value"":5283979400},""r11"":{""value"":5194294304,""symbolLocation"":0,""symbol"":""change_tracker_add_modified""},""rcx"":{""value"":0},""r14"":{""value"":11},""rsi"":{""value"":5283979400}},""name"":""CrBrowserMain"",""queue"":""com.apple.main-thread"",""frames"":[{""imageOffset"":140706014144832,""imageIndex"":0},{""imageOffset"":32782,""symbol"":""__pthread_kill"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":25087,""symbol"":""pthread_kill"",""symbolLocation"":263,""imageIndex"":2},{""imageOffset"":279240,""symbol"":""raise"",""symbolLocation"":26,""imageIndex"":3},{""imageOffset"":15869,""symbol"":""_sigtramp"",""symbolLocation"":29,""imageIndex"":4},{""imageOffset"":0,""imageIndex"":0},{""imageOffset"":10370,""symbol"":""ffi_call_unix64"",""symbolLocation"":82,""imageIndex"":5},{""imageOffset"":13106457616,""imageIndex"":0}]},{""id"":1342700,""name"":""com.apple.rosetta.exceptionserver"",""frames"":[{""imageOffset"":18852,""imageIndex"":6},{""imageOffset"":75576,""imageIndex"":6},{""imageOffset"":81616,""imageIndex"":6}]},{""id"":1342742,""frames"":[{""imageOffset"":140706014144832,""imageIndex"":0},{""imageOffset"":17386,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":27247,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1249,""imageIndex"":2},{""imageOffset"":3377823,""symbol"":""blas_thread_server"",""symbolLocation"":207,""imageIndex"":7},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":1342743,""frames"":[{""imageOffset"":140706014144832,""imageIndex"":0},{""imageOffset"":17386,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":27247,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1249,""imageIndex"":2},{""imageOffset"":3377823,""symbol"":""blas_thread_server"",""symbolLocation"":207,""imageIndex"":7},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":1342744,""frames"":[{""imageOffset"":140706014144832,""imageIndex"":0},{""imageOffset"":17386,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":27247,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1249,""imageIndex"":2},{""imageOffset"":3377823,""symbol"":""blas_thread_server"",""symbolLocation"":207,""imageIndex"":7},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":1342745,""frames"":[{""imageOffset"":140706014144832,""imageIndex"":0},{""imageOffset"":17386,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":27247,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1249,""imageIndex"":2},{""imageOffset"":3377823,""symbol"":""blas_thread_server"",""symbolLocation"":207,""imageIndex"":7},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":1342746,""frames"":[{""imageOffset"":140706014144832,""imageIndex"":0},{""imageOffset"":17386,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":27247,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1249,""imageIndex"":2},{""imageOffset"":3377823,""symbol"":""blas_thread_server"",""symbolLocation"":207,""imageIndex"":7},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":1342747,""frames"":[{""imageOffset"":140706014144832,""imageIndex"":0},{""imageOffset"":17386,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":27247,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1249,""imageIndex"":2},{""imageOffset"":3377823,""symbol"":""blas_thread_server"",""symbolLocation"":207,""imageIndex"":7},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":1342748,""frames"":[{""imageOffset"":140706014144832,""imageIndex"":0},{""imageOffset"":17386,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":27247,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1249,""imageIndex"":2},{""imageOffset"":3377823,""symbol"":""blas_thread_server"",""symbolLocation"":207,""imageIndex"":7},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":1342749,""frames"":[{""imageOffset"":140706014144832,""imageIndex"":0},{""imageOffset"":17386,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":27247,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1249,""imageIndex"":2},{""imageOffset"":3377823,""symbol"":""blas_thread_server"",""symbolLocation"":207,""imageIndex"":7},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":1342750,""frames"":[{""imageOffset"":140706014144832,""imageIndex"":0},{""imageOffset"":17386,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":27247,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1249,""imageIndex"":2},{""imageOffset"":3377823,""symbol"":""blas_thread_server"",""symbolLocation"":207,""imageIndex"":7},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":1342918,""name"":""ThreadPoolServiceThread"",""frames"":[{""imageOffset"":140706014144832,""imageIndex"":0},{""imageOffset"":43210,""symbol"":""kevent64"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":45272682,""symbol"":""base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*)"",""symbolLocation"":330,""imageIndex"":8},{""imageOffset"":45272263,""symbol"":""base::MessagePumpKqueue::Run(base::MessagePump::Delegate*)"",""symbolLocation"":167,""imageIndex"":8},{""imageOffset"":44783147,""symbol"":""base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta)"",""symbolLocation"":139,""imageIndex"":8},{""imageOffset"":44537803,""symbol"":""base::RunLoop::Run()"",""symbolLocation"":395,""imageIndex"":8},{""imageOffset"":44829332,""symbol"":""base::internal::ServiceThread::Run(base::RunLoop*)"",""symbolLocation"":20,""imageIndex"":8},{""imageOffset"":44911229,""symbol"":""base::Thread::ThreadMain()"",""symbolLocation"":413,""imageIndex"":8},{""imageOffset"":45211143,""symbol"":""base::(anonymous namespace)::ThreadFunc(void*)"",""symbolLocation"":87,""imageIndex"":8},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":1342920,""name"":""ThreadPoolBackgroundWorker"",""frames"":[{""imageOffset"":140706014144832,""imageIndex"":0},{""imageOffset"":6522,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":7400,""symbol"":""mach_msg"",""symbolLocation"":56,""imageIndex"":1},{""imageOffset"":45229202,""symbol"":""base::WaitableEvent::TimedWait(base::TimeDelta const&)"",""symbolLocation"":434,""imageIndex"":8},{""imageOffset"":44869496,""symbol"":""base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*)"",""symbolLocation"":56,""imageIndex"":8},{""imageOffset"":44872016,""symbol"":""base::internal::WorkerThread::RunWorker()"",""symbolLocation"":1024,""imageIndex"":8},{""imageOffset"":44870724,""symbol"":""base::internal::WorkerThread::RunBackgroundPooledWorker()"",""symbolLocation"":20,""imageIndex"":8},{""imageOffset"":45211143,""symbol"":""base::(anonymous namespace)::ThreadFunc(void*)"",""symbolLocation"":87,""imageIndex"":8},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":1342921,""name"":""Chrome_IOThread"",""frames"":[{""imageOffset"":140706014144832,""imageIndex"":0},{""imageOffset"":43210,""symbol"":""kevent64"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":45272682,""symbol"":""base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*)"",""symbolLocation"":330,""imageIndex"":8},{""imageOffset"":45272263,""symbol"":""base::MessagePumpKqueue::Run(base::MessagePump::Delegate*)"",""symbolLocation"":167,""imageIndex"":8},{""imageOffset"":44783147,""symbol"":""base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta)"",""symbolLocation"":139,""imageIndex"":8},{""imageOffset"":44537803,""symbol"":""base::RunLoop::Run()"",""symbolLocation"":395,""imageIndex"":8},{""imageOffset"":111124230,""symbol"":""content::BrowserProcessSubThread::IOThreadRun(base::RunLoop*)"",""symbolLocation"":102,""imageIndex"":8},{""imageOffset"":44911229,""symbol"":""base::Thread::ThreadMain()"",""symbolLocation"":413,""imageIndex"":8},{""imageOffset"":45211143,""symbol"":""base::(anonymous namespace)::ThreadFunc(void*)"",""symbolLocation"":87,""imageIndex"":8},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":1342922,""name"":""NetworkConfigWatcher"",""frames"":[{""imageOffset"":140706014144832,""imageIndex"":0},{""imageOffset"":6522,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":7400,""symbol"":""mach_msg"",""symbolLocation"":56,""imageIndex"":1},{""imageOffset"":45229202,""symbol"":""base::WaitableEvent::TimedWait(base::TimeDelta const&)"",""symbolLocation"":434,""imageIndex"":8},{""imageOffset"":45228751,""symbol"":""base::WaitableEvent::Wait()"",""symbolLocation"":31,""imageIndex"":8},{""imageOffset"":44343771,""symbol"":""base::MessagePumpDefault::Run(base::MessagePump::Delegate*)"",""symbolLocation"":171,""imageIndex"":8},{""imageOffset"":44783147,""symbol"":""base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta)"",""symbolLocation"":139,""imageIndex"":8},{""imageOffset"":44537803,""symbol"":""base::RunLoop::Run()"",""symbolLocation"":395,""imageIndex"":8},{""imageOffset"":44911229,""symbol"":""base::Thread::ThreadMain()"",""symbolLocation"":413,""imageIndex"":8},{""imageOffset"":45211143,""symbol"":""base::(anonymous namespace)::ThreadFunc(void*)"",""symbolLocation"":87,""imageIndex"":8},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":1342928,""name"":""ThreadPoolForegroundWorker"",""frames"":[{""imageOffset"":140706014144832,""imageIndex"":0},{""imageOffset"":6522,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":7400,""symbol"":""mach_msg"",""symbolLocation"":56,""imageIndex"":1},{""imageOffset"":45229202,""symbol"":""base::WaitableEvent::TimedWait(base::TimeDelta const&)"",""symbolLocation"":434,""imageIndex"":8},{""imageOffset"":44869496,""symbol"":""base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*)"",""symbolLocation"":56,""imageIndex"":8},{""imageOffset"":44872016,""symbol"":""base::internal::WorkerThread::RunWorker()"",""symbolLocation"":1024,""imageIndex"":8},{""imageOffset"":44870868,""symbol"":""base::internal::WorkerThread::RunPooledWorker()"",""symbolLocation"":20,""imageIndex"":8},{""imageOffset"":45211143,""symbol"":""base::(anonymous namespace)::ThreadFunc(void*)"",""symbolLocation"":87,""imageIndex"":8},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":1342930,""name"":""CompositorTileWorker1"",""frames"":[{""imageOffset"":140706014144832,""imageIndex"":0},{""imageOffset"":17386,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":27247,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1249,""imageIndex"":2},{""imageOffset"":45194776,""symbol"":""base::ConditionVariable::Wait()"",""symbolLocation"":104,""imageIndex"":8},{""imageOffset"":64820728,""symbol"":""non-virtual thunk to cc::SingleThreadTaskGraphRunner::Run()"",""symbolLocation"":56,""imageIndex"":8},{""imageOffset"":45211143,""symbol"":""base::(anonymous namespace)::ThreadFunc(void*)"",""symbolLocation"":87,""imageIndex"":8},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":1342931,""name"":""Chrome_InProcGpuThread"",""frames"":[{""imageOffset"":140706014144832,""imageIndex"":0},{""imageOffset"":6522,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":7400,""symbol"":""mach_msg"",""symbolLocation"":56,""imageIndex"":1},{""imageOffset"":45229202,""symbol"":""base::WaitableEvent::TimedWait(base::TimeDelta const&)"",""symbolLocation"":434,""imageIndex"":8},{""imageOffset"":44343823,""symbol"":""base::MessagePumpDefault::Run(base::MessagePump::Delegate*)"",""symbolLocation"":223,""imageIndex"":8},{""imageOffset"":44783147,""symbol"":""base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta)"",""symbolLocation"":139,""imageIndex"":8},{""imageOffset"":44537803,""symbol"":""base::RunLoop::Run()"",""symbolLocation"":395,""imageIndex"":8},{""imageOffset"":44911229,""symbol"":""base::Thread::ThreadMain()"",""symbolLocation"":413,""imageIndex"":8},{""imageOffset"":45211143,""symbol"":""base::(anonymous namespace)::ThreadFunc(void*)"",""symbolLocation"":87,""imageIndex"":8},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":1342932,""name"":""Chrome_ChildIOThread"",""frames"":[{""imageOffset"":140706014144832,""imageIndex"":0},{""imageOffset"":43210,""symbol"":""kevent64"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":45272682,""symbol"":""base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*)"",""symbolLocation"":330,""imageIndex"":8},{""imageOffset"":45272263,""symbol"":""base::MessagePumpKqueue::Run(base::MessagePump::Delegate*)"",""symbolLocation"":167,""imageIndex"":8},{""imageOffset"":44783147,""symbol"":""base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta)"",""symbolLocation"":139,""imageIndex"":8},{""imageOffset"":44537803,""symbol"":""base::RunLoop::Run()"",""symbolLocation"":395,""imageIndex"":8},{""imageOffset"":44911229,""symbol"":""base::Thread::ThreadMain()"",""symbolLocation"":413,""imageIndex"":8},{""imageOffset"":45211143,""symbol"":""base::(anonymous namespace)::ThreadFunc(void*)"",""symbolLocation"":87,""imageIndex"":8},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":1342933,""name"":""NetworkConfigWatcher"",""frames"":[{""imageOffset"":140706014144832,""imageIndex"":0},{""imageOffset"":6522,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":7400,""symbol"":""mach_msg"",""symbolLocation"":56,""imageIndex"":1},{""imageOffset"":45229202,""symbol"":""base::WaitableEvent::TimedWait(base::TimeDelta const&)"",""symbolLocation"":434,""imageIndex"":8},{""imageOffset"":45228751,""symbol"":""base::WaitableEvent::Wait()"",""symbolLocation"":31,""imageIndex"":8},{""imageOffset"":44343771,""symbol"":""base::MessagePumpDefault::Run(base::MessagePump::Delegate*)"",""symbolLocation"":171,""imageIndex"":8},{""imageOffset"":44783147,""symbol"":""base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta)"",""symbolLocation"":139,""imageIndex"":8},{""imageOffset"":44537803,""symbol"":""base::RunLoop::Run()"",""symbolLocation"":395,""imageIndex"":8},{""imageOffset"":44911229,""symbol"":""base::Thread::ThreadMain()"",""symbolLocation"":413,""imageIndex"":8},{""imageOffset"":45211143,""symbol"":""base::(anonymous namespace)::ThreadFunc(void*)"",""symbolLocation"":87,""imageIndex"":8},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":1342934,""name"":""VizCompositorThread"",""frames"":[{""imageOffset"":140706014144832,""imageIndex"":0},{""imageOffset"":6522,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":7400,""symbol"":""mach_msg"",""symbolLocation"":56,""imageIndex"":1},{""imageOffset"":45229202,""symbol"":""base::WaitableEvent::TimedWait(base::TimeDelta const&)"",""symbolLocation"":434,""imageIndex"":8},{""imageOffset"":44343823,""symbol"":""base::MessagePumpDefault::Run(base::MessagePump::Delegate*)"",""symbolLocation"":223,""imageIndex"":8},{""imageOffset"":44783147,""symbol"":""base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta)"",""symbolLocation"":139,""imageIndex"":8},{""imageOffset"":44537803,""symbol"":""base::RunLoop::Run()"",""symbolLocation"":395,""imageIndex"":8},{""imageOffset"":44911229,""symbol"":""base::Thread::ThreadMain()"",""symbolLocation"":413,""imageIndex"":8},{""imageOffset"":45211143,""symbol"":""base::(anonymous namespace)::ThreadFunc(void*)"",""symbolLocation"":87,""imageIndex"":8},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":1342956,""name"":""NetworkConfigWatcher"",""frames"":[{""imageOffset"":140706014144832,""imageIndex"":0},{""imageOffset"":6522,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":7400,""symbol"":""mach_msg"",""symbolLocation"":56,""imageIndex"":1},{""imageOffset"":45229202,""symbol"":""base::WaitableEvent::TimedWait(base::TimeDelta const&)"",""symbolLocation"":434,""imageIndex"":8},{""imageOffset"":45228751,""symbol"":""base::WaitableEvent::Wait()"",""symbolLocation"":31,""imageIndex"":8},{""imageOffset"":44343771,""symbol"":""base::MessagePumpDefault::Run(base::MessagePump::Delegate*)"",""symbolLocation"":171,""imageIndex"":8},{""imageOffset"":44783147,""symbol"":""base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta)"",""symbolLocation"":139,""imageIndex"":8},{""imageOffset"":44537803,""symbol"":""base::RunLoop::Run()"",""symbolLocation"":395,""imageIndex"":8},{""imageOffset"":44911229,""symbol"":""base::Thread::ThreadMain()"",""symbolLocation"":413,""imageIndex"":8},{""imageOffset"":45211143,""symbol"":""base::(anonymous namespace)::ThreadFunc(void*)"",""symbolLocation"":87,""imageIndex"":8},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":1342957,""name"":""ThreadPoolSingleThreadForegroundBlocking0"",""frames"":[{""imageOffset"":140706014144832,""imageIndex"":0},{""imageOffset"":6522,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":7400,""symbol"":""mach_msg"",""symbolLocation"":56,""imageIndex"":1},{""imageOffset"":45229202,""symbol"":""base::WaitableEvent::TimedWait(base::TimeDelta const&)"",""symbolLocation"":434,""imageIndex"":8},{""imageOffset"":45228751,""symbol"":""base::WaitableEvent::Wait()"",""symbolLocation"":31,""imageIndex"":8},{""imageOffset"":44869482,""symbol"":""base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*)"",""symbolLocation"":42,""imageIndex"":8},{""imageOffset"":44872016,""symbol"":""base::internal::WorkerThread::RunWorker()"",""symbolLocation"":1024,""imageIndex"":8},{""imageOffset"":44870964,""symbol"":""base::internal::WorkerThread::RunDedicatedWorker()"",""symbolLocation"":20,""imageIndex"":8},{""imageOffset"":45211143,""symbol"":""base::(anonymous namespace)::ThreadFunc(void*)"",""symbolLocation"":87,""imageIndex"":8},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":1342983,""name"":""MemoryInfra"",""frames"":[{""imageOffset"":140706014144832,""imageIndex"":0},{""imageOffset"":6522,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":7400,""symbol"":""mach_msg"",""symbolLocation"":56,""imageIndex"":1},{""imageOffset"":45229202,""symbol"":""base::WaitableEvent::TimedWait(base::TimeDelta const&)"",""symbolLocation"":434,""imageIndex"":8},{""imageOffset"":45228751,""symbol"":""base::WaitableEvent::Wait()"",""symbolLocation"":31,""imageIndex"":8},{""imageOffset"":44343771,""symbol"":""base::MessagePumpDefault::Run(base::MessagePump::Delegate*)"",""symbolLocation"":171,""imageIndex"":8},{""imageOffset"":44783147,""symbol"":""base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta)"",""symbolLocation"":139,""imageIndex"":8},{""imageOffset"":44537803,""symbol"":""base::RunLoop::Run()"",""symbolLocation"":395,""imageIndex"":8},{""imageOffset"":44911229,""symbol"":""base::Thread::ThreadMain()"",""symbolLocation"":413,""imageIndex"":8},{""imageOffset"":45211143,""symbol"":""base::(anonymous namespace)::ThreadFunc(void*)"",""symbolLocation"":87,""imageIndex"":8},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":1343026,""name"":""NetworkConfigWatcher"",""frames"":[{""imageOffset"":140706014144832,""imageIndex"":0},{""imageOffset"":6522,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":7400,""symbol"":""mach_msg"",""symbolLocation"":56,""imageIndex"":1},{""imageOffset"":45229202,""symbol"":""base::WaitableEvent::TimedWait(base::TimeDelta const&)"",""symbolLocation"":434,""imageIndex"":8},{""imageOffset"":45228751,""symbol"":""base::WaitableEvent::Wait()"",""symbolLocation"":31,""imageIndex"":8},{""imageOffset"":44343771,""symbol"":""base::MessagePumpDefault::Run(base::MessagePump::Delegate*)"",""symbolLocation"":171,""imageIndex"":8},{""imageOffset"":44783147,""symbol"":""base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta)"",""symbolLocation"":139,""imageIndex"":8},{""imageOffset"":44537803,""symbol"":""base::RunLoop::Run()"",""symbolLocation"":395,""imageIndex"":8},{""imageOffset"":44911229,""symbol"":""base::Thread::ThreadMain()"",""symbolLocation"":413,""imageIndex"":8},{""imageOffset"":45211143,""symbol"":""base::(anonymous namespace)::ThreadFunc(void*)"",""symbolLocation"":87,""imageIndex"":8},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":1343074,""name"":""ThreadPoolSingleThreadSharedBackgroundBlocking1"",""frames"":[{""imageOffset"":140706014144832,""imageIndex"":0},{""imageOffset"":6522,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":7400,""symbol"":""mach_msg"",""symbolLocation"":56,""imageIndex"":1},{""imageOffset"":45229202,""symbol"":""base::WaitableEvent::TimedWait(base::TimeDelta const&)"",""symbolLocation"":434,""imageIndex"":8},{""imageOffset"":45228751,""symbol"":""base::WaitableEvent::Wait()"",""symbolLocation"":31,""imageIndex"":8},{""imageOffset"":44869482,""symbol"":""base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*)"",""symbolLocation"":42,""imageIndex"":8},{""imageOffset"":44871229,""symbol"":""base::internal::WorkerThread::RunWorker()"",""symbolLocation"":237,""imageIndex"":8},{""imageOffset"":44870772,""symbol"":""base::internal::WorkerThread::RunBackgroundSharedWorker()"",""symbolLocation"":20,""imageIndex"":8},{""imageOffset"":45211143,""symbol"":""base::(anonymous namespace)::ThreadFunc(void*)"",""symbolLocation"":87,""imageIndex"":8},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":1343152,""name"":""com.apple.NSEventThread"",""frames"":[{""imageOffset"":140706014144832,""imageIndex"":0},{""imageOffset"":6522,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":7400,""symbol"":""mach_msg"",""symbolLocation"":56,""imageIndex"":1},{""imageOffset"":523696,""symbol"":""__CFRunLoopServiceMachPort"",""symbolLocation"":319,""imageIndex"":9},{""imageOffset"":517184,""symbol"":""__CFRunLoopRun"",""symbolLocation"":1276,""imageIndex"":9},{""imageOffset"":514180,""symbol"":""CFRunLoopRunSpecific"",""symbolLocation"":562,""imageIndex"":9},{""imageOffset"":1752926,""symbol"":""_NSEventThread"",""symbolLocation"":132,""imageIndex"":10},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":1346112,""frames"":[{""imageOffset"":141332,""imageIndex"":6}]},{""id"":1346337,""name"":""ThreadPoolForegroundWorker"",""frames"":[{""imageOffset"":140706014144832,""imageIndex"":0},{""imageOffset"":6522,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":7400,""symbol"":""mach_msg"",""symbolLocation"":56,""imageIndex"":1},{""imageOffset"":45229202,""symbol"":""base::WaitableEvent::TimedWait(base::TimeDelta const&)"",""symbolLocation"":434,""imageIndex"":8},{""imageOffset"":44869496,""symbol"":""base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*)"",""symbolLocation"":56,""imageIndex"":8},{""imageOffset"":44872016,""symbol"":""base::internal::WorkerThread::RunWorker()"",""symbolLocation"":1024,""imageIndex"":8},{""imageOffset"":44870868,""symbol"":""base::internal::WorkerThread::RunPooledWorker()"",""symbolLocation"":20,""imageIndex"":8},{""imageOffset"":45211143,""symbol"":""base::(anonymous namespace)::ThreadFunc(void*)"",""symbolLocation"":87,""imageIndex"":8},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]},{""id"":1347523,""frames"":[{""imageOffset"":141332,""imageIndex"":6}]},{""id"":1348662,""frames"":[{""imageOffset"":141332,""imageIndex"":6}]},{""id"":1348753,""frames"":[{""imageOffset"":141332,""imageIndex"":6}]},{""id"":1348963,""frames"":[{""imageOffset"":141332,""imageIndex"":6}]},{""id"":1349227,""frames"":[{""imageOffset"":141332,""imageIndex"":6}]},{""id"":1349720,""frames"":[{""imageOffset"":141332,""imageIndex"":6}]},{""id"":1349722,""frames"":[{""imageOffset"":141332,""imageIndex"":6}]},{""id"":1349723,""frames"":[{""imageOffset"":141332,""imageIndex"":6}]},{""id"":1350643,""frames"":[{""imageOffset"":141332,""imageIndex"":6}]},{""id"":1350802,""frames"":[{""imageOffset"":141332,""imageIndex"":6}]},{""id"":1351261,""frames"":[{""imageOffset"":140706014144832,""imageIndex"":0},{""imageOffset"":17386,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":27247,""symbol"":""_pthread_cond_wait"",""symbolLocation"":1249,""imageIndex"":2},{""imageOffset"":1486188,""symbol"":""PyThread_acquire_lock_timed"",""symbolLocation"":700,""imageIndex"":11},{""imageOffset"":1808927,""symbol"":""acquire_timed"",""symbolLocation"":111,""imageIndex"":11},{""imageOffset"":1809200,""symbol"":""lock_PyThread_acquire_lock"",""symbolLocation"":48,""imageIndex"":11},{""imageOffset"":282196,""symbol"":""method_vectorcall_VARARGS_KEYWORDS"",""symbolLocation"":388,""imageIndex"":11},{""imageOffset"":1131916,""symbol"":""call_function"",""symbolLocation"":732,""imageIndex"":11},{""imageOffset"":1120914,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":25186,""imageIndex"":11},{""imageOffset"":1135235,""symbol"":""_PyEval_EvalCode"",""symbolLocation"":2611,""imageIndex"":11},{""imageOffset"":248017,""symbol"":""_PyFunction_Vectorcall"",""symbolLocation"":289,""imageIndex"":11},{""imageOffset"":1131916,""symbol"":""call_function"",""symbolLocation"":732,""imageIndex"":11},{""imageOffset"":1120914,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":25186,""imageIndex"":11},{""imageOffset"":1135235,""symbol"":""_PyEval_EvalCode"",""symbolLocation"":2611,""imageIndex"":11},{""imageOffset"":248017,""symbol"":""_PyFunction_Vectorcall"",""symbolLocation"":289,""imageIndex"":11},{""imageOffset"":1131916,""symbol"":""call_function"",""symbolLocation"":732,""imageIndex"":11},{""imageOffset"":1120914,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":25186,""imageIndex"":11},{""imageOffset"":248136,""symbol"":""function_code_fastcall"",""symbolLocation"":104,""imageIndex"":11},{""imageOffset"":1131916,""symbol"":""call_function"",""symbolLocation"":732,""imageIndex"":11},{""imageOffset"":1120914,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":25186,""imageIndex"":11},{""imageOffset"":248136,""symbol"":""function_code_fastcall"",""symbolLocation"":104,""imageIndex"":11},{""imageOffset"":1131916,""symbol"":""call_function"",""symbolLocation"":732,""imageIndex"":11},{""imageOffset"":1120914,""symbol"":""_PyEval_EvalFrameDefault"",""symbolLocation"":25186,""imageIndex"":11},{""imageOffset"":248136,""symbol"":""function_code_fastcall"",""symbolLocation"":104,""imageIndex"":11},{""imageOffset"":256466,""symbol"":""method_vectorcall"",""symbolLocation"":274,""imageIndex"":11},{""imageOffset"":1807302,""symbol"":""t_bootstrap"",""symbolLocation"":70,""imageIndex"":11},{""imageOffset"":1485001,""symbol"":""pythread_wrapper"",""symbolLocation"":25,""imageIndex"":11},{""imageOffset"":25825,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":2},{""imageOffset"":8043,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":2}]}], ""usedImages"" : [ { ""size"" : 0, ""source"" : ""A"", ""base"" : 0, ""uuid"" : ""00000000-0000-0000-0000-000000000000"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 140703591854080, ""size"" : 229376, ""uuid"" : ""26a59789-b846-3ed4-96dc-8dbef3c0c8e7"", ""path"" : ""\/usr\/lib\/system\/libsystem_kernel.dylib"", ""name"" : ""libsystem_kernel.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 140703592083456, ""size"" : 49152, ""uuid"" : ""2f6c275d-7e14-3d31-a924-e1bb41d2415f"", ""path"" : ""\/usr\/lib\/system\/libsystem_pthread.dylib"", ""name"" : ""libsystem_pthread.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 140703590838272, ""size"" : 561152, ""uuid"" : ""8e54eca2-9bd8-3482-9589-b9574434d1aa"", ""path"" : ""\/usr\/lib\/system\/libsystem_c.dylib"", ""name"" : ""libsystem_c.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 140703592181760, ""size"" : 40960, ""uuid"" : ""a9552f53-a0cd-3e43-9930-80e582ed51ff"", ""path"" : ""\/usr\/lib\/system\/libsystem_platform.dylib"", ""name"" : ""libsystem_platform.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 140703836921856, ""size"" : 24576, ""uuid"" : ""75228ec2-ea1d-37f6-8ac5-dc2a4944d456"", ""path"" : ""\/usr\/lib\/libffi.dylib"", ""name"" : ""libffi.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 140703127740416, ""size"" : 196608, ""uuid"" : ""24497be3-a1b4-360a-b90e-cde9ce78a93b"", ""path"" : ""\/usr\/libexec\/rosetta\/runtime"", ""name"" : ""runtime"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4604395520, ""size"" : 62603264, ""uuid"" : ""9112000d-375c-34f0-9a66-9d68f91a12cd"", ""path"" : ""\/Applications\/ChimeraX-1.3.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/.dylibs\/libopenblas.0.dylib"", ""name"" : ""libopenblas.0.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 5314043904, ""size"" : 131002368, ""uuid"" : ""86651daf-3bff-3a6f-b313-e84d303e55eb"", ""path"" : ""\/Applications\/ChimeraX-1.3.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt5\/Qt\/lib\/QtWebEngineCore.framework\/Versions\/5\/QtWebEngineCore"", ""name"" : ""QtWebEngineCore"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 140703592398848, ""CFBundleShortVersionString"" : ""6.9"", ""CFBundleIdentifier"" : ""com.apple.CoreFoundation"", ""size"" : 5246976, ""uuid"" : ""fa52ff10-225c-3a0f-bfcc-556795ccd233"", ""path"" : ""\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation"", ""name"" : ""CoreFoundation"", ""CFBundleVersion"" : ""1858.112"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 140703636033536, ""CFBundleShortVersionString"" : ""6.9"", ""CFBundleIdentifier"" : ""com.apple.AppKit"", ""size"" : 15261696, ""uuid"" : ""92a78ebd-bba5-3f18-a5e1-768c955539d7"", ""path"" : ""\/System\/Library\/Frameworks\/AppKit.framework\/Versions\/C\/AppKit"", ""name"" : ""AppKit"", ""CFBundleVersion"" : ""2113.40.127"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 4514504704, ""CFBundleShortVersionString"" : ""3.9.6, (c) 2001-2019 Python Software Foundation."", ""CFBundleIdentifier"" : ""org.python.python"", ""size"" : 2510848, ""uuid"" : ""7fdc4a6b-e70b-3c9e-a72e-cd15ddf0d90f"", ""path"" : ""\/Applications\/ChimeraX-1.3.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/Python"", ""name"" : ""Python"", ""CFBundleVersion"" : ""3.9.6"" } ], ""sharedCache"" : { ""base"" : 140703588827136, ""size"" : 15226814464, ""uuid"" : ""a1c5d735-ceb0-350d-9729-bb0e9be86d75"" }, ""vmSummary"" : ""ReadOnly portion of Libraries: Total=1.5G resident=0K(0%) swapped_out_or_unallocated=1.5G(100%)\nWritable regions: Total=3.7G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=3.7G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 1024K 8 \nActivity Tracing 256K 1 \nCG backing stores 4992K 8 \nCG image 2152K 52 \nColorSync 240K 28 \nCoreAnimation 5672K 38 \nCoreGraphics 16K 3 \nCoreServices 624K 2 \nCoreUI image data 4744K 34 \nFoundation 36K 2 \nKernel Alloc Once 8K 1 \nMALLOC 1.9G 274 \nMALLOC guard page 192K 9 \nMALLOC_MEDIUM (reserved) 776.0M 10 reserved VM address space (unallocated)\nMALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)\nMach message 24K 6 \nOpenGL GLSL 384K 4 \nRosetta Arena 4096K 2 \nRosetta Generic 2152K 535 \nRosetta IndirectBranch 2048K 1 \nRosetta JIT 128.0M 1 \nRosetta Return Stack 780K 78 \nRosetta Thread Context 780K 78 \nSTACK GUARD 44K 11 \nStack 162.7M 39 \nStack Guard 56.1M 28 \nVM_ALLOCATE 108.2M 226 \nVM_ALLOCATE (reserved) 224.1M 13 reserved VM address space (unallocated)\n__DATA 42.6M 686 \n__DATA_CONST 31.0M 340 \n__DATA_DIRTY 1644K 214 \n__FONT_DATA 4K 1 \n__GLSLBUILTINS 5176K 1 \n__LINKEDIT 804.0M 155 \n__OBJC_RO 82.6M 1 \n__OBJC_RW 3200K 2 \n__TEXT 758.8M 676 \n__UNICODE 592K 1 \ndyld private memory 1024K 1 \nmapped file 5.5G 1199 \nshared memory 3004K 22 \nunshared pmap 12.1M 9 \n=========== ======= ======= \nTOTAL 10.9G 4801 \nTOTAL, minus reserved VM space 9.6G 4801 \n"", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""5fb4245a1bbfe8005e33a1e1"", ""factorPackIds"" : { }, ""deploymentId"" : 240000015 }, { ""rolloutId"" : ""61301e3a61217b3110231469"", ""factorPackIds"" : { ""SIRI_FIND_MY_CONFIGURATION_FILES"" : ""6216ae152a40e71046e16225"" }, ""deploymentId"" : 240000016 } ], ""experiments"" : [ ] } } ===== Log before crash start ===== UCSF ChimeraX version: 1.3 (2021-12-08) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/shj152/Library/CloudStorage/OneDrive- > UniversityofCopenhagen/Desktop/PhD/Bioinformatics/AlphaFold/Bacteriophages/P2VsPyocin.cxs > format session opened ChimeraX session > lighting simple > close #1,3#2 > close #8 > ui tool show ""Show Sequence Viewer"" > sequence chain #5/A #5/B #5/C Alignment identifier is 1 > sequence chain #6/B #6/C #6/D Alignment identifier is 2 > select #6/B-D:245 24 atoms, 21 bonds, 3 residues, 1 model selected > select #6/B-D:245-251 174 atoms, 171 bonds, 21 residues, 1 model selected > select #5/A-C:45 51 atoms, 48 bonds, 3 residues, 1 model selected > select #5/A-C:1-45 1986 atoms, 1992 bonds, 135 residues, 1 model selected > select #5/A-C:42 66 atoms, 63 bonds, 3 residues, 1 model selected > select #5/A-C:1-42 1845 atoms, 1851 bonds, 126 residues, 1 model selected > select #5/A-C:44 48 atoms, 45 bonds, 3 residues, 1 model selected > select #5/A-C:1-44 1935 atoms, 1941 bonds, 132 residues, 1 model selected > delete sel > select #6/B-D:245 24 atoms, 21 bonds, 3 residues, 1 model selected > select #6/B-D:245-251 174 atoms, 171 bonds, 21 residues, 1 model selected > delete sel > select #6 5415 atoms, 5496 bonds, 732 residues, 1 model selected > select #5 6738 atoms, 6777 bonds, 468 residues, 1 model selected > select #6 5415 atoms, 5496 bonds, 732 residues, 1 model selected > ui mousemode right select > select #5 6738 atoms, 6777 bonds, 468 residues, 1 model selected > select #6/C:241 7 atoms, 6 bonds, 1 residue, 1 model selected > select add #5/C:46 19 atoms, 17 bonds, 2 residues, 2 models selected > select up 95 atoms, 94 bonds, 10 residues, 2 models selected > select up 4051 atoms, 4091 bonds, 400 residues, 2 models selected > select up 12153 atoms, 12273 bonds, 1200 residues, 2 models selected > combine sel Remapping chain ID 'B' in gpH1_250trimer.pdb #6 to 'E' Remapping chain ID 'C' in gpH1_250trimer.pdb #6 to 'F' > ~select #6 6738 atoms, 6777 bonds, 468 residues, 1 model selected > ~select #5 Nothing selected > close #5-6 > select #1 12153 atoms, 12273 bonds, 1200 residues, 1 model selected > bond sel Created 6 bonds > select clear > save ""/Users/shj152/Desktop/full tailfibre P2.cxs"" FYI: command is replacing existing command: ""build modify"" FYI: command is replacing existing command: ""build start"" FYI: command is replacing existing command: ""bond"" FYI: command is replacing existing command: ""~bond"" FYI: command is replacing existing command: ""bond length"" > select clear > ui mousemode right translate > hide #4 models > show #4 models > hide #4 models > hide #7 models > show #7 models > close #4 > open /Users/shj152/Library/CloudStorage/OneDrive- > UniversityofCopenhagen/Desktop/PhD/Bioinformatics/AlphaFold/Bacteriophages/P2/gpH_trimer/301-669/gpH301_699trimer.pdb Chain information for gpH301_699trimer.pdb #2 --- Chain | Description A B C | No description available > mmaker #2 to #7 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker gpH_gpG_complex.pdb, chain B (#7) with gpH301_699trimer.pdb, chain B (#2), sequence alignment score = 352.4 RMSD between 63 pruned atom pairs is 0.797 angstroms; (across all 70 pairs: 1.534) > ui tool show ""Show Sequence Viewer"" > sequence chain #2/A #2/B #2/C Alignment identifier is 1 > sequence chain #7/B #7/C #7/D Alignment identifier is 2 > sequence chain #7/E #7/F #7/G Alignment identifier is 3 > ui mousemode right select > ui mousemode right translate > ui mousemode right select > select #7/B:4 8 atoms, 7 bonds, 1 residue, 1 model selected > select #7/B-D:1 24 atoms, 21 bonds, 3 residues, 1 model selected > select #7/B-D:1-4 102 atoms, 105 bonds, 12 residues, 1 model selected > delete sel > select #2/B:305 12 atoms, 11 bonds, 1 residue, 1 model selected > select #2/A-C:304-305 96 atoms, 96 bonds, 6 residues, 1 model selected > select #2/A-C:304-369 3183 atoms, 3210 bonds, 198 residues, 1 model selected > delete sel > select #2/B:302 7 atoms, 6 bonds, 1 residue, 1 model selected > select up 21 atoms, 20 bonds, 2 residues, 1 model selected > select up 4513 atoms, 4556 bonds, 303 residues, 1 model selected > select up 13539 atoms, 13668 bonds, 909 residues, 1 model selected > select add #7/B:6 13547 atoms, 13675 bonds, 910 residues, 2 models selected > select up 13558 atoms, 13687 bonds, 911 residues, 2 models selected > select up 14069 atoms, 14207 bonds, 975 residues, 2 models selected > select up 19416 atoms, 19662 bonds, 1632 residues, 2 models selected > combine sel Remapping chain ID 'B' in gpH_gpG_complex.pdb #7 to 'H' Remapping chain ID 'C' in gpH_gpG_complex.pdb #7 to 'I' > bond sel Created 36 bonds > undo > close #2-3,7 > open /Users/shj152/Library/CloudStorage/OneDrive- > UniversityofCopenhagen/Desktop/PhD/Bioinformatics/AlphaFold/Bacteriophages/P2/gpH_trimer/301-669/gpH301_699trimer.pdb Chain information for gpH301_699trimer.pdb #2 --- Chain | Description A B C | No description available > mmaker #2 to #1 Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/cmd_line/tool.py"", line 297, in execute cmd.run(cmd_text) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/commands/cli.py"", line 2877, in run result = ci.function(session, *args, optional=optional, File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/commands/cli.py"", line 3417, in __call__ return self.cmd.run(text, _used_aliases=_used_aliases, log=log) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/commands/cli.py"", line 2856, in run result = ci.function(session, **kw_args) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/match_maker/match.py"", line 695, in cmd_match ret_vals = match(session, pairing, match_items, matrix, alg, gap_open, gap_extend, File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/match_maker/match.py"", line 360, in match score, s1, s2 = align(session, rseq, mseq, File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/match_maker/match.py"", line 67, in align score, seqs = NeedlemanWunsch.nw(ref, match, File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_algs/NeedlemanWunsch/__init__.py"", line 50, in nw """".join([s1.ss_type(i) or ' ' for i in range(len(s1))]), File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_algs/NeedlemanWunsch/__init__.py"", line 50, in """".join([s1.ss_type(i) or ' ' for i in range(len(s1))]), File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/atomic/molobject.py"", line 1151, in ss_type r = self.residue_at(loc) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/atomic/molobject.py"", line 1117, in residue_at return convert.residue_or_none(f(self._c_pointer, index)) IndexError: vector IndexError: vector File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/atomic/molobject.py"", line 1117, in residue_at return convert.residue_or_none(f(self._c_pointer, index)) See log for complete Python traceback. > mmaker #2 to #1 Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/cmd_line/tool.py"", line 297, in execute cmd.run(cmd_text) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/commands/cli.py"", line 2877, in run result = ci.function(session, *args, optional=optional, File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/commands/cli.py"", line 3417, in __call__ return self.cmd.run(text, _used_aliases=_used_aliases, log=log) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/commands/cli.py"", line 2856, in run result = ci.function(session, **kw_args) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/match_maker/match.py"", line 695, in cmd_match ret_vals = match(session, pairing, match_items, matrix, alg, gap_open, gap_extend, File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/match_maker/match.py"", line 360, in match score, s1, s2 = align(session, rseq, mseq, File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/match_maker/match.py"", line 67, in align score, seqs = NeedlemanWunsch.nw(ref, match, File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_algs/NeedlemanWunsch/__init__.py"", line 50, in nw """".join([s1.ss_type(i) or ' ' for i in range(len(s1))]), File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_algs/NeedlemanWunsch/__init__.py"", line 50, in """".join([s1.ss_type(i) or ' ' for i in range(len(s1))]), File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/atomic/molobject.py"", line 1151, in ss_type r = self.residue_at(loc) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/atomic/molobject.py"", line 1117, in residue_at return convert.residue_or_none(f(self._c_pointer, index)) IndexError: vector IndexError: vector File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/atomic/molobject.py"", line 1117, in residue_at return convert.residue_or_none(f(self._c_pointer, index)) See log for complete Python traceback. > ui mousemode right translate > ui tool show ""Show Sequence Viewer"" > sequence chain #1/E #1/F #1/D Alignment identifier is 1 ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.3 (2021-12-08) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 76.3 OpenGL renderer: Apple M1 Max OpenGL vendor: AppleHardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro18,2 Processor Name: Unknown Processor Speed: 2,4 GHz Number of Processors: 1 Total Number of Cores: 10 L2 Cache: 20 MB Memory: 32 GB Software: System Software Overview: System Version: macOS 12.3.1 (21E258) Kernel Version: Darwin 21.4.0 Time since boot: 4 days 17:57 Graphics/Displays: Apple M1 Max: Chipset Model: Apple M1 Max Type: GPU Bus: Built-In Total Number of Cores: 32 Vendor: Apple (0x106b) Metal Family: Supported, Metal GPUFamily Apple 7 Displays: Color LCD: Display Type: Built-in Liquid Retina XDR Display Resolution: 3456 x 2234 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal P27q-20: Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition) UI Looks like: 2560 x 1440 @ 60.00Hz Mirror: Off Online: Yes Locale: (None, 'UTF-8') PyQt5 5.15.2, Qt 5.15.2 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.2 Babel: 2.9.1 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2021.5.30 cftime: 1.5.1.1 charset-normalizer: 2.0.9 ChimeraX-AddCharge: 1.2.2 ChimeraX-AddH: 2.1.11 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.2.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.31 ChimeraX-AtomicLibrary: 4.2 ChimeraX-AtomSearch: 2.0 ChimeraX-AtomSearchLibrary: 1.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.0 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.6.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.2 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.2 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5 ChimeraX-CommandLine: 1.1.5 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.3 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1.5 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.1.2 ChimeraX-Help: 1.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0 ChimeraX-Label: 1.1 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.4 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 2.0.4 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.4 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.2.6 ChimeraX-ModelPanel: 1.2.1 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.2 ChimeraX-OpenCommand: 1.7 ChimeraX-PDB: 2.6.5 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.4.6 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.1 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.6.1 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1 ChimeraX-ToolshedUtils: 1.2 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.13.7 ChimeraX-uniprot: 2.2 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.0.1 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.4 cxservices: 1.1 cycler: 0.11.0 Cython: 0.29.24 decorator: 5.1.0 docutils: 0.17.1 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 3.6.0 html2text: 2020.1.16 idna: 3.3 ihm: 0.21 imagecodecs: 2021.4.28 imagesize: 1.3.0 ipykernel: 5.5.5 ipython: 7.23.1 ipython-genutils: 0.2.0 jedi: 0.18.0 Jinja2: 3.0.1 jupyter-client: 6.1.12 jupyter-core: 4.9.1 kiwisolver: 1.3.2 lxml: 4.6.3 lz4: 3.1.3 MarkupSafe: 2.0.1 matplotlib: 3.4.3 matplotlib-inline: 0.1.3 msgpack: 1.0.2 netCDF4: 1.5.7 networkx: 2.6.3 numexpr: 2.8.0 numpy: 1.21.2 openvr: 1.16.801 packaging: 21.0 ParmEd: 3.2.0 parso: 0.8.3 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 8.3.2 pip: 21.2.4 pkginfo: 1.7.1 prompt-toolkit: 3.0.23 psutil: 5.8.0 ptyprocess: 0.7.0 pycollada: 0.7.1 pydicom: 2.1.2 Pygments: 2.10.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.6 PyQt5-commercial: 5.15.2 PyQt5-sip: 12.8.1 PyQtWebEngine-commercial: 5.15.2 python-dateutil: 2.8.2 pytz: 2021.3 pyzmq: 22.3.0 qtconsole: 5.1.1 QtPy: 1.11.3 RandomWords: 0.3.0 requests: 2.26.0 scipy: 1.7.1 setuptools: 57.5.0 sfftk-rw: 0.7.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 4.2.0 sphinx-autodoc-typehints: 1.12.0 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-jurko: 0.6 tifffile: 2021.4.8 tinyarray: 1.2.3 tornado: 6.1 traitlets: 5.1.1 urllib3: 1.26.7 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.37.0 wheel-filename: 1.3.0 }}} " defect closed normal Sequence can't reproduce all ChimeraX