id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 6488 Calling _cpp_modified failed chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-10.16-x86_64-i386-64bit ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Aborted Current thread 0x00000002032e6600 (most recent call first): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/atomic/molarray.py"", line 773 in delete File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/std_commands/delete.py"", line 39 in delete_atoms File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/std_commands/delete.py"", line 22 in delete File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/commands/cli.py"", line 2856 in run File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/cmd_line/tool.py"", line 297 in execute File 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All rights reserved. How to cite UCSF ChimeraX > open /Users/shj152/Library/CloudStorage/OneDrive- > UniversityofCopenhagen/Desktop/PhD/Bioinformatics/AlphaFold/Bacteriophages/T4/gp34a/ranked_0.pdb Chain information for ranked_0.pdb #1 --- Chain | Description A B C | No description available > open /Users/shj152/Library/CloudStorage/OneDrive- > UniversityofCopenhagen/Desktop/PhD/Bioinformatics/AlphaFold/Bacteriophages/T4/gp34b/ranked_0.pdb > /Users/shj152/Library/CloudStorage/OneDrive- > UniversityofCopenhagen/Desktop/PhD/Bioinformatics/AlphaFold/Bacteriophages/T4/gp34b/ranked_1.pdb > /Users/shj152/Library/CloudStorage/OneDrive- > UniversityofCopenhagen/Desktop/PhD/Bioinformatics/AlphaFold/Bacteriophages/T4/gp34b/ranked_2.pdb > /Users/shj152/Library/CloudStorage/OneDrive- > UniversityofCopenhagen/Desktop/PhD/Bioinformatics/AlphaFold/Bacteriophages/T4/gp34b/ranked_3.pdb > /Users/shj152/Library/CloudStorage/OneDrive- > UniversityofCopenhagen/Desktop/PhD/Bioinformatics/AlphaFold/Bacteriophages/T4/gp34b/ranked_4.pdb Chain information for ranked_0.pdb #2 --- Chain | Description A B C | No description available Chain information for ranked_1.pdb #3 --- Chain | Description A B C | No description available Chain information for ranked_2.pdb #4 --- Chain | Description A B C | No description available Chain information for ranked_3.pdb #5 --- Chain | Description A B C | No description available Chain information for ranked_4.pdb #6 --- Chain | Description A B C | No description available > mmaker #2 to #3 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_1.pdb, chain A (#3) with ranked_0.pdb, chain B (#2), sequence alignment score = 1483.5 RMSD between 294 pruned atom pairs is 0.545 angstroms; (across all 300 pairs: 0.641) > mmaker #4 to #3 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_1.pdb, chain A (#3) with ranked_2.pdb, chain A (#4), sequence alignment score = 1476.3 RMSD between 287 pruned atom pairs is 0.665 angstroms; (across all 300 pairs: 0.872) > mmaker #5 to #3 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_1.pdb, chain A (#3) with ranked_3.pdb, chain B (#5), sequence alignment score = 1483.5 RMSD between 266 pruned atom pairs is 1.179 angstroms; (across all 300 pairs: 1.723) > mmaker #6 to #3 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_1.pdb, chain A (#3) with ranked_4.pdb, chain A (#6), sequence alignment score = 1477.5 RMSD between 271 pruned atom pairs is 1.203 angstroms; (across all 300 pairs: 1.560) > mmaker #1 to #2 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker ranked_0.pdb, chain A (#2) with ranked_0.pdb, chain A (#1), sequence alignment score = 504.3 RMSD between 97 pruned atom pairs is 0.296 angstroms; (across all 100 pairs: 0.743) > close #3-6 > ui tool show ""Show Sequence Viewer"" > sequence chain #1/A #1/B #1/C Alignment identifier is 1 > sequence chain #2/A #2/B #2/C Alignment identifier is 2 > ui mousemode right select > select #1/B:299 11 atoms, 10 bonds, 1 residue, 1 model selected > select #1/B:296 12 atoms, 11 bonds, 1 residue, 1 model selected > select #1/A-C:300 69 atoms, 66 bonds, 3 residues, 1 model selected > select #1/A-C:296-300 195 atoms, 192 bonds, 15 residues, 1 model selected > delete sel > select #2/C:96 12 atoms, 11 bonds, 1 residue, 1 model selected > select #2/C:97 7 atoms, 6 bonds, 1 residue, 1 model selected > select #2/A-C:97 21 atoms, 18 bonds, 3 residues, 1 model selected > select #2/A-C:1-97 4590 atoms, 4644 bonds, 291 residues, 1 model selected > select #2/A-C:95-96 96 atoms, 96 bonds, 6 residues, 1 model selected > select #2/A-C:1-96 4569 atoms, 4623 bonds, 288 residues, 1 model selected > select #2/A-C:95 60 atoms, 60 bonds, 3 residues, 1 model selected > select #2/A-C:1-95 4533 atoms, 4587 bonds, 285 residues, 1 model selected > delete sel > combine #1 #2 Remapping chain ID 'A' in ranked_0.pdb #2 to 'D' Remapping chain ID 'B' in ranked_0.pdb #2 to 'E' Remapping chain ID 'C' in ranked_0.pdb #2 to 'F' > hide #1 models > hide #2 models > select #3/F:96 12 atoms, 11 bonds, 1 residue, 1 model selected > select > #2/A-C:96,104-106,116-120,130-134,144-148,157-161,194-198,205-214,217-227 2535 atoms, 2529 bonds, 150 residues, 1 model selected > select #2/A-C:96-97 57 atoms, 54 bonds, 6 residues, 1 model selected > select #2/A-C:96-97 57 atoms, 54 bonds, 6 residues, 1 model selected > ui tool show ""Show Sequence Viewer"" > sequence chain #1/A #1/B #1/C #3/A #3/B #3/C Alignment identifier is 1 > sequence chain #2/A #2/B #2/C #3/D #3/E #3/F Alignment identifier is 2 > select #2/A-C:96 #3/D-F:96 72 atoms, 66 bonds, 6 residues, 2 models selected > select #1/A-C:295 #3/A-C:295 120 atoms, 120 bonds, 6 residues, 2 models selected > select #1/A-C:295 #3/A-C:295 120 atoms, 120 bonds, 6 residues, 2 models selected > select add #3/F:96 132 atoms, 131 bonds, 7 residues, 2 models selected > select add #3/E:96 144 atoms, 142 bonds, 8 residues, 2 models selected > select add #3/D:96 156 atoms, 153 bonds, 9 residues, 2 models selected > select up 672 atoms, 681 bonds, 33 residues, 2 models selected > select down 156 atoms, 153 bonds, 9 residues, 2 models selected > bond sel Created 2 bonds > select clear > select #3/F:96 12 atoms, 11 bonds, 1 residue, 1 model selected > select #3/B:295 20 atoms, 20 bonds, 1 residue, 1 model selected > select add #3/F:96 32 atoms, 31 bonds, 2 residues, 1 model selected > bond sel Created 0 bonds > select clear > ui mousemode right ""translate selected atoms"" > select clear > select #3/F:96 12 atoms, 11 bonds, 1 residue, 1 model selected Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/alignment_headers/rmsd.py"", line 199, in _atomic_changes_cb if chain.structure in changes.modified_structures(): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. > select #3/B:295 20 atoms, 20 bonds, 1 residue, 1 model selected > ui mousemode right select > select #3/F:96 12 atoms, 11 bonds, 1 residue, 1 model selected > select add #3/B:295 32 atoms, 31 bonds, 2 residues, 1 model selected > bond sel Created 3 bonds > save ""/Users/shj152/Library/CloudStorage/OneDrive- > UniversityofCopenhagen/Desktop/PhD/Bioinformatics/AlphaFold/Bacteriophages/T4/gp34 > full model.cxs"" FYI: command is replacing existing command: ""build modify"" FYI: command is replacing existing command: ""build start"" FYI: command is replacing existing command: ""bond"" FYI: command is replacing existing command: ""~bond"" FYI: command is replacing existing command: ""bond length"" > close #1-2 Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seqalign/alignment.py"", line 444, in _delay_disassoc self._notify_observers(self.NOTE_DEL_ASSOC, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seqalign/alignment.py"", line 669, in _notify_observers recipient.alignment_notification(self.NOTE_MOD_ASSOC, (note_name, note_data)) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/tool.py"", line 465, in alignment_notification self.seq_canvas.assoc_mod(aseq) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 420, in assoc_mod self.lead_block.assoc_mod(aseq) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 1641, in assoc_mod label_text.setFont(self._label_font(aseq)) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 2110, in _label_font if self.has_associated_structures(line): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 2054, in has_associated_structures and [chain for chain in line.match_maps.keys() if not chain.structure.deleted]: File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 2054, in and [chain for chain in line.match_maps.keys() if not chain.structure.deleted]: File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes done"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seqalign/alignment.py"", line 444, in _delay_disassoc self._notify_observers(self.NOTE_DEL_ASSOC, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seqalign/alignment.py"", line 669, in _notify_observers recipient.alignment_notification(self.NOTE_MOD_ASSOC, (note_name, note_data)) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/tool.py"", line 465, in alignment_notification self.seq_canvas.assoc_mod(aseq) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 420, in assoc_mod self.lead_block.assoc_mod(aseq) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 1641, in assoc_mod label_text.setFont(self._label_font(aseq)) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 2110, in _label_font if self.has_associated_structures(line): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 2054, in has_associated_structures and [chain for chain in line.match_maps.keys() if not chain.structure.deleted]: File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 2054, in and [chain for chain in line.match_maps.keys() if not chain.structure.deleted]: File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes done"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seqalign/alignment.py"", line 444, in _delay_disassoc self._notify_observers(self.NOTE_DEL_ASSOC, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seqalign/alignment.py"", line 669, in _notify_observers recipient.alignment_notification(self.NOTE_MOD_ASSOC, (note_name, note_data)) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/tool.py"", line 465, in alignment_notification self.seq_canvas.assoc_mod(aseq) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 420, in assoc_mod self.lead_block.assoc_mod(aseq) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 1641, in assoc_mod label_text.setFont(self._label_font(aseq)) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 2110, in _label_font if self.has_associated_structures(line): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 2054, in has_associated_structures and [chain for chain in line.match_maps.keys() if not chain.structure.deleted]: File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 2054, in and [chain for chain in line.match_maps.keys() if not chain.structure.deleted]: File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes done"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. > select clear Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seqalign/alignment.py"", line 444, in _delay_disassoc self._notify_observers(self.NOTE_DEL_ASSOC, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seqalign/alignment.py"", line 669, in _notify_observers recipient.alignment_notification(self.NOTE_MOD_ASSOC, (note_name, note_data)) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/tool.py"", line 465, in alignment_notification self.seq_canvas.assoc_mod(aseq) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 420, in assoc_mod self.lead_block.assoc_mod(aseq) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 1641, in assoc_mod label_text.setFont(self._label_font(aseq)) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 2110, in _label_font if self.has_associated_structures(line): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 2054, in has_associated_structures and [chain for chain in line.match_maps.keys() if not chain.structure.deleted]: File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 2054, in and [chain for chain in line.match_maps.keys() if not chain.structure.deleted]: File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes done"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seqalign/alignment.py"", line 444, in _delay_disassoc self._notify_observers(self.NOTE_DEL_ASSOC, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seqalign/alignment.py"", line 669, in _notify_observers recipient.alignment_notification(self.NOTE_MOD_ASSOC, (note_name, note_data)) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/tool.py"", line 465, in alignment_notification self.seq_canvas.assoc_mod(aseq) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 420, in assoc_mod self.lead_block.assoc_mod(aseq) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 1641, in assoc_mod label_text.setFont(self._label_font(aseq)) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 2110, in _label_font if self.has_associated_structures(line): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 2054, in has_associated_structures and [chain for chain in line.match_maps.keys() if not chain.structure.deleted]: File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 2054, in and [chain for chain in line.match_maps.keys() if not chain.structure.deleted]: File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes done"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seqalign/alignment.py"", line 444, in _delay_disassoc self._notify_observers(self.NOTE_DEL_ASSOC, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seqalign/alignment.py"", line 669, in _notify_observers recipient.alignment_notification(self.NOTE_MOD_ASSOC, (note_name, note_data)) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/tool.py"", line 465, in alignment_notification self.seq_canvas.assoc_mod(aseq) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 420, in assoc_mod self.lead_block.assoc_mod(aseq) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 1641, in assoc_mod label_text.setFont(self._label_font(aseq)) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 2110, in _label_font if self.has_associated_structures(line): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 2054, in has_associated_structures and [chain for chain in line.match_maps.keys() if not chain.structure.deleted]: File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 2054, in and [chain for chain in line.match_maps.keys() if not chain.structure.deleted]: File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes done"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. > open /Users/shj152/Library/CloudStorage/OneDrive- > UniversityofCopenhagen/Desktop/PhD/Bioinformatics/AlphaFold/Bacteriophages/T4/gp34c/ranked_0.pdb > /Users/shj152/Library/CloudStorage/OneDrive- > UniversityofCopenhagen/Desktop/PhD/Bioinformatics/AlphaFold/Bacteriophages/T4/gp34c/ranked_1.pdb > /Users/shj152/Library/CloudStorage/OneDrive- > UniversityofCopenhagen/Desktop/PhD/Bioinformatics/AlphaFold/Bacteriophages/T4/gp34c/ranked_2.pdb > /Users/shj152/Library/CloudStorage/OneDrive- > UniversityofCopenhagen/Desktop/PhD/Bioinformatics/AlphaFold/Bacteriophages/T4/gp34c/ranked_3.pdb > /Users/shj152/Library/CloudStorage/OneDrive- > UniversityofCopenhagen/Desktop/PhD/Bioinformatics/AlphaFold/Bacteriophages/T4/gp34c/ranked_4.pdb Chain information for ranked_0.pdb #1 --- Chain | Description A B C | No description available Chain information for ranked_1.pdb #2 --- Chain | Description A B C | No description available Chain information for ranked_2.pdb #4 --- Chain | Description A B C | No description available Chain information for ranked_3.pdb #5 --- Chain | Description A B C | No description available Chain information for ranked_4.pdb #6 --- Chain | Description A B C | No description available Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seqalign/alignment.py"", line 444, in _delay_disassoc self._notify_observers(self.NOTE_DEL_ASSOC, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seqalign/alignment.py"", line 669, in _notify_observers recipient.alignment_notification(self.NOTE_MOD_ASSOC, (note_name, note_data)) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/tool.py"", line 465, in alignment_notification self.seq_canvas.assoc_mod(aseq) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 420, in assoc_mod self.lead_block.assoc_mod(aseq) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 1641, in assoc_mod label_text.setFont(self._label_font(aseq)) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 2110, in _label_font if self.has_associated_structures(line): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 2054, in has_associated_structures and [chain for chain in line.match_maps.keys() if not chain.structure.deleted]: File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 2054, in and [chain for chain in line.match_maps.keys() if not chain.structure.deleted]: File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes done"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seqalign/alignment.py"", line 444, in _delay_disassoc self._notify_observers(self.NOTE_DEL_ASSOC, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seqalign/alignment.py"", line 669, in _notify_observers recipient.alignment_notification(self.NOTE_MOD_ASSOC, (note_name, note_data)) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/tool.py"", line 465, in alignment_notification self.seq_canvas.assoc_mod(aseq) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 420, in assoc_mod self.lead_block.assoc_mod(aseq) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 1641, in assoc_mod label_text.setFont(self._label_font(aseq)) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 2110, in _label_font if self.has_associated_structures(line): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 2054, in has_associated_structures and [chain for chain in line.match_maps.keys() if not chain.structure.deleted]: File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 2054, in and [chain for chain in line.match_maps.keys() if not chain.structure.deleted]: File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes done"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seqalign/alignment.py"", line 444, in _delay_disassoc self._notify_observers(self.NOTE_DEL_ASSOC, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seqalign/alignment.py"", line 669, in _notify_observers recipient.alignment_notification(self.NOTE_MOD_ASSOC, (note_name, note_data)) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/tool.py"", line 465, in alignment_notification self.seq_canvas.assoc_mod(aseq) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 420, in assoc_mod self.lead_block.assoc_mod(aseq) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 1641, in assoc_mod label_text.setFont(self._label_font(aseq)) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 2110, in _label_font if self.has_associated_structures(line): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 2054, in has_associated_structures and [chain for chain in line.match_maps.keys() if not chain.structure.deleted]: File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 2054, in and [chain for chain in line.match_maps.keys() if not chain.structure.deleted]: File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes done"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. [had to delete a bunch of stuff to get within ticket limits] Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seqalign/alignment.py"", line 444, in _delay_disassoc self._notify_observers(self.NOTE_DEL_ASSOC, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seqalign/alignment.py"", line 669, in _notify_observers recipient.alignment_notification(self.NOTE_MOD_ASSOC, (note_name, note_data)) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/tool.py"", line 465, in alignment_notification self.seq_canvas.assoc_mod(aseq) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 420, in assoc_mod self.lead_block.assoc_mod(aseq) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 1641, in assoc_mod label_text.setFont(self._label_font(aseq)) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 2110, in _label_font if self.has_associated_structures(line): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 2054, in has_associated_structures and [chain for chain in line.match_maps.keys() if not chain.structure.deleted]: File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 2054, in and [chain for chain in line.match_maps.keys() if not chain.structure.deleted]: File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes done"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/triggerset.py"", line 134, in invoke return self._func(self._name, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seqalign/alignment.py"", line 444, in _delay_disassoc self._notify_observers(self.NOTE_DEL_ASSOC, data) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seqalign/alignment.py"", line 669, in _notify_observers recipient.alignment_notification(self.NOTE_MOD_ASSOC, (note_name, note_data)) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/tool.py"", line 465, in alignment_notification self.seq_canvas.assoc_mod(aseq) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 420, in assoc_mod self.lead_block.assoc_mod(aseq) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 1641, in assoc_mod label_text.setFont(self._label_font(aseq)) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 2110, in _label_font if self.has_associated_structures(line): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 2054, in has_associated_structures and [chain for chain in line.match_maps.keys() if not chain.structure.deleted]: File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/seq-view/seq_canvas.py"", line 2054, in and [chain for chain in line.match_maps.keys() if not chain.structure.deleted]: File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 57, in _getattr_ return look_in_class._attr_registration.get_attr(attr_name) File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None AttributeError: 'Sequence' object has no attribute 'structure' Error processing trigger ""changes done"": AttributeError: 'Sequence' object has no attribute 'structure' File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site- packages/chimerax/core/attributes.py"", line 85, in get_attr raise AttributeError(""'%s' object has no attribute '%s'"" % (self.class_.__name__, attr_name)) from None See log for complete Python traceback. > ui mousemode right translate > ui tool show ""Show Sequence Viewer"" > sequence chain #1/A #1/B #1/C Alignment identifier is 1 > sequence chain #3/A #3/B #3/C Alignment identifier is 2 > ui mousemode right select > select #1/B:32 16 atoms, 15 bonds, 1 residue, 1 model selected > select #1/A-C:31 72 atoms, 69 bonds, 3 residues, 1 model selected > select #1/A-C:1-31 1509 atoms, 1527 bonds, 93 residues, 1 model selected > delete sel > select #3/C:232 40 atoms, 38 bonds, 2 residues, 1 model selected > select #3/A-C:233-234 159 atoms, 156 bonds, 12 residues, 1 model selected > select #3/A-C:233-295 5844 atoms, 5883 bonds, 378 residues, 1 model selected > select clear > select #3/C:232 40 atoms, 38 bonds, 2 residues, 1 model selected > select #1/B:32 16 atoms, 15 bonds, 1 residue, 1 model selected > select #1/C:78 10 atoms, 9 bonds, 1 residue, 1 model selected > select #3/B:278 21 atoms, 19 bonds, 2 residues, 1 model selected > select #1/C:86 10 atoms, 9 bonds, 1 residue, 1 model selected > select #3/B:286 22 atoms, 20 bonds, 2 residues, 1 model selected > select #1/C:86 10 atoms, 9 bonds, 1 residue, 1 model selected > select clear > ui mousemode right translate > ui mousemode right select > select #3/C:292 34 atoms, 34 bonds, 2 residues, 1 model selected > select #1/B:92 10 atoms, 9 bonds, 1 residue, 1 model selected > select #3/C:292 34 atoms, 34 bonds, 2 residues, 1 model selected > select #1/B:92 10 atoms, 9 bonds, 1 residue, 1 model selected > select #1/A-C:32 48 atoms, 45 bonds, 3 residues, 1 model selected > ui mousemode right translate > ui mousemode right select > select #3/C:232 40 atoms, 38 bonds, 2 residues, 1 model selected > select #3/A-C:232-280 4464 atoms, 4488 bonds, 294 residues, 1 model selected > select > #3/A-C:96-231,232,232,233,233,234,234,235,235,236,236,237,237,238,238,239,239,240,240,241,241,242,242,243,243,244,244,245,245,246,246,247,247,248,248,249,249,250,250,251,251,252,252,253,253,254,254,255,255,256,256,257,257,258,258,259,259,260,260,261,261,262,262,263,263,264,264,265,265,266,266,267,267,268,268,269,269,270,270,271,271,272,272,273,273,274,274,275,275,276,276,277,277,278,278,279,279,280,280,281,281,282,282,283,283,284,284,285,285,286,286,287,287,288,288,289,289,290,290,291,291,292,292,293,293,294,294,295,295-300 18972 atoms, 19142 bonds, 1215 residues, 1 model selected > select clear > select #1/A:32 16 atoms, 15 bonds, 1 residue, 1 model selected > select #3/A:232 40 atoms, 38 bonds, 2 residues, 1 model selected > select #3/A-C:232-233 216 atoms, 213 bonds, 12 residues, 1 model selected > select #3/A-C:232-295 5964 atoms, 6003 bonds, 384 residues, 1 model selected > select clear > select #3/A:232 40 atoms, 38 bonds, 2 residues, 1 model selected > hide #1 models Drag select of 175 residues > select up 3342 atoms, 3348 bonds, 219 residues, 1 model selected > select down 2640 atoms, 175 residues, 1 model selected > select clear > show #1 models > select #1/A-C:32 48 atoms, 45 bonds, 3 residues, 1 model selected > select #1/A-C:32-33 84 atoms, 81 bonds, 6 residues, 1 model selected > select #3/A:231 38 atoms, 37 bonds, 2 residues, 1 model selected > select #3/A:232 40 atoms, 38 bonds, 2 residues, 1 model selected > select zone sel extend t Missing or invalid ""range"" argument: Expected a number > select zone sel 50 extend true Selected 24626 atoms > select clear > select #3/A:231 38 atoms, 37 bonds, 2 residues, 1 model selected > select #3/A:232 40 atoms, 38 bonds, 2 residues, 1 model selected > select up 278 atoms, 279 bonds, 18 residues, 1 model selected > select down 40 atoms, 38 bonds, 2 residues, 1 model selected > select #3/A-C:232-233 216 atoms, 213 bonds, 12 residues, 1 model selected > select #3/A-C:194-232 3750 atoms, 3789 bonds, 234 residues, 1 model selected > select clear > select #3/A:232 40 atoms, 38 bonds, 2 residues, 1 model selected > select #3/A-C:233-234 159 atoms, 156 bonds, 12 residues, 1 model selected > select #3/A-C:233-252 1836 atoms, 1845 bonds, 120 residues, 1 model selected > select clear > select #3/A:232 40 atoms, 38 bonds, 2 residues, 1 model selected > select #3/A-C:233-237 408 atoms, 408 bonds, 30 residues, 1 model selected > select #3/A-C:233-252 1836 atoms, 1845 bonds, 120 residues, 1 model selected > select #3/A-C:252 93 atoms, 90 bonds, 6 residues, 1 model selected > select #3/A-C:250-252 285 atoms, 285 bonds, 18 residues, 1 model selected > select clear > select #1/A:32 16 atoms, 15 bonds, 1 residue, 1 model selected > select up 72 atoms, 71 bonds, 5 residues, 1 model selected > select up 4022 atoms, 4040 bonds, 269 residues, 1 model selected > select down 72 atoms, 71 bonds, 5 residues, 1 model selected > select down 16 atoms, 15 bonds, 1 residue, 1 model selected > select down 16 atoms, 15 bonds, 1 residue, 1 model selected > select clear > select #3/A:232 40 atoms, 38 bonds, 2 residues, 1 model selected > select clear > hide #1 models > select clear Drag select of 171 residues > delete sel ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.3 (2021-12-08) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 76.3 OpenGL renderer: Apple M1 Max OpenGL vendor: AppleHardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro18,2 Processor Name: Unknown Processor Speed: 2,4 GHz Number of Processors: 1 Total Number of Cores: 10 L2 Cache: 20 MB Memory: 32 GB Software: System Software Overview: System Version: macOS 12.2.1 (21D62) Kernel Version: Darwin 21.3.0 Time since boot: 35 days 1:01 Graphics/Displays: Apple M1 Max: Chipset Model: Apple M1 Max Type: GPU Bus: Built-In Total Number of Cores: 32 Vendor: Apple (0x106b) Metal Family: Supported, Metal GPUFamily Apple 7 Displays: Color LCD: Display Type: Built-in Liquid Retina XDR Display Resolution: 3456 x 2234 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal P27q-20: Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition) UI Looks like: 2560 x 1440 @ 60.00Hz Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Locale: (None, 'UTF-8') PyQt5 5.15.2, Qt 5.15.2 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.2 Babel: 2.9.1 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2021.5.30 cftime: 1.5.1.1 charset-normalizer: 2.0.9 ChimeraX-AddCharge: 1.2.2 ChimeraX-AddH: 2.1.11 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.2.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.31 ChimeraX-AtomicLibrary: 4.2 ChimeraX-AtomSearch: 2.0 ChimeraX-AtomSearchLibrary: 1.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.0 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.6.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.2 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.2 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5 ChimeraX-CommandLine: 1.1.5 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.3 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1.5 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.1.2 ChimeraX-Help: 1.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0 ChimeraX-Label: 1.1 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.4 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 2.0.4 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.4 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.2.6 ChimeraX-ModelPanel: 1.2.1 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.2 ChimeraX-OpenCommand: 1.7 ChimeraX-PDB: 2.6.5 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.4.6 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.1 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.6.1 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1 ChimeraX-ToolshedUtils: 1.2 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.13.7 ChimeraX-uniprot: 2.2 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.0.1 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.4 cxservices: 1.1 cycler: 0.11.0 Cython: 0.29.24 decorator: 5.1.0 docutils: 0.17.1 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 3.6.0 html2text: 2020.1.16 idna: 3.3 ihm: 0.21 imagecodecs: 2021.4.28 imagesize: 1.3.0 ipykernel: 5.5.5 ipython: 7.23.1 ipython-genutils: 0.2.0 jedi: 0.18.0 Jinja2: 3.0.1 jupyter-client: 6.1.12 jupyter-core: 4.9.1 kiwisolver: 1.3.2 lxml: 4.6.3 lz4: 3.1.3 MarkupSafe: 2.0.1 matplotlib: 3.4.3 matplotlib-inline: 0.1.3 msgpack: 1.0.2 netCDF4: 1.5.7 networkx: 2.6.3 numexpr: 2.8.0 numpy: 1.21.2 openvr: 1.16.801 packaging: 21.0 ParmEd: 3.2.0 parso: 0.8.3 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 8.3.2 pip: 21.2.4 pkginfo: 1.7.1 prompt-toolkit: 3.0.23 psutil: 5.8.0 ptyprocess: 0.7.0 pycollada: 0.7.1 pydicom: 2.1.2 Pygments: 2.10.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.6 PyQt5-commercial: 5.15.2 PyQt5-sip: 12.8.1 PyQtWebEngine-commercial: 5.15.2 python-dateutil: 2.8.2 pytz: 2021.3 pyzmq: 22.3.0 qtconsole: 5.1.1 QtPy: 1.11.3 RandomWords: 0.3.0 requests: 2.26.0 scipy: 1.7.1 setuptools: 57.5.0 sfftk-rw: 0.7.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 4.2.0 sphinx-autodoc-typehints: 1.12.0 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-jurko: 0.6 tifffile: 2021.4.8 tinyarray: 1.2.3 tornado: 6.1 traitlets: 5.1.1 urllib3: 1.26.7 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.37.0 wheel-filename: 1.3.0 }}} " defect closed normal Core can't reproduce all ChimeraX