id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 6426 Crash in self.graphics_window.mapFromGlobal(QCursor.pos()) chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-10.16-x86_64-i386-64bit ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Bus error Current thread 0x00000002006d1600 (most recent call first): File ""/private/var/folders/d5/32cnx92x3j90t8qyqsk66k1r0000gn/T/AppTranslocation/E2C81661-E619-4B7F-B28B-8A4E579BBC8B/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/mouse_modes/mousemodes.py"", line 514 in _cursor_position File ""/private/var/folders/d5/32cnx92x3j90t8qyqsk66k1r0000gn/T/AppTranslocation/E2C81661-E619-4B7F-B28B-8A4E579BBC8B/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/mouse_modes/mousemodes.py"", line 472 in mouse_pause_tracking File ""/private/var/folders/d5/32cnx92x3j90t8qyqsk66k1r0000gn/T/AppTranslocation/E2C81661-E619-4B7F-B28B-8A4E579BBC8B/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py"", line 140 in _redraw_timer_callback File ""/private/var/folders/d5/32cnx92x3j90t8qyqsk66k1r0000gn/T/AppTranslocation/E2C81661-E619-4B7F-B28B-8A4E579BBC8B/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py301event_loop/private/var/folders/d5/32cnx92x3j90t8qyqsk66k1r0000gn/T/AppTranslocation/E2C81661-E619-4B7F-B28B-8A4E579BBC8B/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py867init/private/var/folders/d5/32cnx92x3j90t8qyqsk66k1r0000gn/T/AppTranslocation/E2C81661-E619-4B7F-B28B-8A4E579BBC8B/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py1018/private/var/folders/d5/32cnx92x3j90t8qyqsk66k1r0000gn/T/AppTranslocation/E2C81661-E619-4B7F-B28B-8A4E579BBC8B/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py87_run_code/private/var/folders/d5/32cnx92x3j90t8qyqsk66k1r0000gn/T/AppTranslocation/E2C81661-E619-4B7F-B28B-8A4E579BBC8B/d/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py197_run_module_as_main {""app_name"":""ChimeraX"",""timestamp"":""2022-03-21 22:03:58.00 +0000"",""app_version"":"""",""slice_uuid"":""9596eff5-d2be-396c-9c4e-6177235c3dae"",""build_version"":"""",""platform"":1,""share_with_app_devs"":0,""is_first_party"":1,""bug_type"":""309"",""os_version"":""macOS 12.2.1 (21D62)"",""incident_id"":""34F5F925-E9FE-465C-B336-7119F697F267"",""name"":""ChimeraX""} { ""uptime"" : 93000, ""procLaunch"" : ""2022-03-21 22:01:44.9893 +0000"", ""procRole"" : ""Background"", ""version"" : 2, ""userID"" : 501, ""deployVersion"" : 210, ""modelCode"" : ""MacBookPro17,1"", ""procStartAbsTime"" : 2229679948605, ""coalitionID"" : 15006, ""osVersion"" : { ""train"" : ""macOS 12.2.1"", ""build"" : ""21D62"", ""releaseType"" : ""User"" }, ""captureTime"" : ""2022-03-21 22:03:57.9154 +0000"", ""incident"" : ""34F5F925-E9FE-465C-B336-7119F697F267"", ""bug_type"" : ""309"", ""pid"" : 19923, ""procExitAbsTime"" : 2232869602972, ""translated"" : true, ""cpuType"" : ""X86-64"", ""procName"" : ""ChimeraX"", ""procPath"" : ""\/private\/var\/folders\/*\/ChimeraX-1.3.app\/Contents\/MacOS\/ChimeraX"", ""parentProc"" : ""launchd"", ""parentPid"" : 1, ""coalitionName"" : ""edu.ucsf.cgl.ChimeraX"", ""crashReporterKey"" : ""67917E8B-5E8A-6D38-1B8F-04211C93A8DF"", ""wakeTime"" : 320, ""sleepWakeUUID"" : ""A5DFE8CF-D230-4F2A-924E-F13A2F199D9C"", ""sip"" : ""enabled"", ""vmRegionInfo"" : ""0x12a44c020 is in 0x12a302000-0x12a471000; bytes after start: 1351712 bytes before end: 151519\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n Mach message 12a2ff000-12a300000 [ 4K] rw-\/rwx SM=PRV \n GAP OF 0x2000 BYTES\n---> mapped file 12a302000-12a471000 [ 1468K] r-x\/rwx SM=COW ...t_id=6c5581c9\n mapped file 12a471000-12a489000 [ 96K] rw-\/rwx SM=COW ...t_id=64e79ac9"", ""isCorpse"" : 1, ""exception"" : {""codes"":""0x000000000000000a, 0x000000012a44c020"",""rawCodes"":[10,5004116000],""type"":""EXC_BAD_ACCESS"",""signal"":""SIGBUS"",""subtype"":""KERN_MEMORY_ERROR at 0x000000012a44c020""}, ""ktriageinfo"" : ""VM - Object is not alive\n"", ""vmregioninfo"" : ""0x12a44c020 is in 0x12a302000-0x12a471000; bytes after start: 1351712 bytes before end: 151519\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n Mach message 12a2ff000-12a300000 [ 4K] rw-\/rwx SM=PRV \n GAP OF 0x2000 BYTES\n---> mapped file 12a302000-12a471000 [ 1468K] r-x\/rwx SM=COW ...t_id=6c5581c9\n mapped file 12a471000-12a489000 [ 96K] rw-\/rwx SM=COW ...t_id=64e79ac9"", ""extMods"" : {""caller"":{""thread_create"":0,""thread_set_state"":0,""task_for_pid"":0},""system"":{""thread_create"":0,""thread_set_state"":0,""task_for_pid"":0},""targeted"":{""thread_create"":0,""thread_set_state"":0,""task_for_pid"":0},""warnings"":0}, ""faultingThread"" : 0, ""threads"" : [{""triggered"":true,""id"":1392307,""threadState"":{""flavor"":""x86_THREAD_STATE"",""rbp"":{""value"":4780505790603304454},""r12"":{""value"":259},""rosetta"":{""tmp2"":{""value"":140703620923656},""tmp1"":{""value"":140706042898708},""tmp0"":{""value"":18446744073709551615}},""rbx"":{""value"":8597083648,""symbolLocation"":0,""symbol"":""_main_thread""},""r8"":{""value"":10},""r15"":{""value"":22},""r10"":{""value"":8597083648,""symbolLocation"":0,""symbol"":""_main_thread""},""rdx"":{""value"":18446744073709551615},""rdi"":{""value"":4780505790603304454},""r9"":{""value"":4780505790603304454},""r13"":{""value"":5},""rflags"":{""value"":643},""rax"":{""value"":0},""rsp"":{""value"":4444659848},""r11"":{""value"":140703621694886,""symbolLocation"":0,""symbol"":""-[__NSCFArray objectAtIndex:]""},""rcx"":{""value"":0},""r14"":{""value"":10},""rsi"":{""value"":4444659848}},""name"":""CrBrowserMain"",""queue"":""com.apple.main-thread"",""frames"":[{""imageOffset"":140706042898752,""imageIndex"":0},{""imageOffset"":28946,""symbol"":""__pthread_kill"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":278980,""symbol"":""raise"",""symbolLocation"":26,""imageIndex"":2},{""imageOffset"":15917,""symbol"":""_sigtramp"",""symbolLocation"":29,""imageIndex"":3},{""imageOffset"":0,""imageIndex"":0},{""imageOffset"":3,""imageIndex"":0}]},{""id"":1392548,""name"":""com.apple.rosetta.exceptionserver"",""frames"":[{""imageOffset"":18660,""imageIndex"":4},{""imageOffset"":71976,""imageIndex"":4},{""imageOffset"":77988,""imageIndex"":4}]},{""id"":1393724,""name"":""ThreadPoolServiceThread"",""frames"":[{""imageOffset"":140706042898752,""imageIndex"":0},{""imageOffset"":39366,""symbol"":""kevent64"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":5221964999,""imageIndex"":0},{""imageOffset"":5221475883,""imageIndex"":0},{""imageOffset"":5221230539,""imageIndex"":0},{""imageOffset"":5221522068,""imageIndex"":0},{""imageOffset"":5221603965,""imageIndex"":0},{""imageOffset"":5221903879,""imageIndex"":0},{""imageOffset"":25844,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":5},{""imageOffset"":8207,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":5}]},{""id"":1393726,""name"":""ThreadPoolBackgroundWorker"",""frames"":[{""imageOffset"":140706042898752,""imageIndex"":0},{""imageOffset"":2746,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":5221921938,""imageIndex"":0},{""imageOffset"":5221562232,""imageIndex"":0},{""imageOffset"":5221564752,""imageIndex"":0},{""imageOffset"":5221563460,""imageIndex"":0},{""imageOffset"":5221903879,""imageIndex"":0},{""imageOffset"":25844,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":5},{""imageOffset"":8207,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":5}]},{""id"":1393727,""name"":""Chrome_IOThread"",""frames"":[{""imageOffset"":140706042898752,""imageIndex"":0},{""imageOffset"":39366,""symbol"":""kevent64"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":5221964999,""imageIndex"":0},{""imageOffset"":5221475883,""imageIndex"":0},{""imageOffset"":5221230539,""imageIndex"":0},{""imageOffset"":5287816966,""imageIndex"":0},{""imageOffset"":5221603965,""imageIndex"":0},{""imageOffset"":5221903879,""imageIndex"":0},{""imageOffset"":25844,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":5},{""imageOffset"":8207,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":5}]},{""id"":1393728,""name"":""NetworkConfigWatcher"",""frames"":[{""imageOffset"":140706042898752,""imageIndex"":0},{""imageOffset"":2746,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":5221921938,""imageIndex"":0},{""imageOffset"":5221921487,""imageIndex"":0},{""imageOffset"":5221036507,""imageIndex"":0},{""imageOffset"":5221475883,""imageIndex"":0},{""imageOffset"":5221230539,""imageIndex"":0},{""imageOffset"":5221603965,""imageIndex"":0},{""imageOffset"":5221903879,""imageIndex"":0},{""imageOffset"":25844,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":5},{""imageOffset"":8207,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":5}]},{""id"":1393730,""name"":""ThreadPoolForegroundWorker"",""frames"":[{""imageOffset"":140706042898752,""imageIndex"":0},{""imageOffset"":2746,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":5221921938,""imageIndex"":0},{""imageOffset"":5221562232,""imageIndex"":0},{""imageOffset"":5221564752,""imageIndex"":0},{""imageOffset"":5221563604,""imageIndex"":0},{""imageOffset"":5221903879,""imageIndex"":0},{""imageOffset"":25844,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":5},{""imageOffset"":8207,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":5}]},{""id"":1393732,""name"":""CompositorTileWorker1"",""frames"":[{""imageOffset"":140706042898752,""imageIndex"":0},{""imageOffset"":13574,""symbol"":""__psynch_cvwait"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":5221887512,""imageIndex"":0},{""imageOffset"":5241513464,""imageIndex"":0},{""imageOffset"":5221903879,""imageIndex"":0},{""imageOffset"":25844,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":5},{""imageOffset"":8207,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":5}]},{""id"":1393733,""name"":""Chrome_InProcGpuThread"",""frames"":[{""imageOffset"":140706042898752,""imageIndex"":0},{""imageOffset"":2746,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":5221921938,""imageIndex"":0},{""imageOffset"":5221036559,""imageIndex"":0},{""imageOffset"":5221475883,""imageIndex"":0},{""imageOffset"":5221230539,""imageIndex"":0},{""imageOffset"":5221603965,""imageIndex"":0},{""imageOffset"":5221903879,""imageIndex"":0},{""imageOffset"":25844,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":5},{""imageOffset"":8207,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":5}]},{""id"":1393734,""name"":""Chrome_ChildIOThread"",""frames"":[{""imageOffset"":140706042898752,""imageIndex"":0},{""imageOffset"":39366,""symbol"":""kevent64"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":5221964999,""imageIndex"":0},{""imageOffset"":5221475883,""imageIndex"":0},{""imageOffset"":5221230539,""imageIndex"":0},{""imageOffset"":5221603965,""imageIndex"":0},{""imageOffset"":5221903879,""imageIndex"":0},{""imageOffset"":25844,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":5},{""imageOffset"":8207,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":5}]},{""id"":1393735,""name"":""VizCompositorThread"",""frames"":[{""imageOffset"":140706042898752,""imageIndex"":0},{""imageOffset"":2746,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":5221921938,""imageIndex"":0},{""imageOffset"":5221921487,""imageIndex"":0},{""imageOffset"":5221036507,""imageIndex"":0},{""imageOffset"":5221475883,""imageIndex"":0},{""imageOffset"":5221230539,""imageIndex"":0},{""imageOffset"":5221603965,""imageIndex"":0},{""imageOffset"":5221903879,""imageIndex"":0},{""imageOffset"":25844,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":5},{""imageOffset"":8207,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":5}]},{""id"":1393736,""name"":""NetworkConfigWatcher"",""frames"":[{""imageOffset"":140706042898752,""imageIndex"":0},{""imageOffset"":2746,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":5221921938,""imageIndex"":0},{""imageOffset"":5221921487,""imageIndex"":0},{""imageOffset"":5221036507,""imageIndex"":0},{""imageOffset"":5221475883,""imageIndex"":0},{""imageOffset"":5221230539,""imageIndex"":0},{""imageOffset"":5221603965,""imageIndex"":0},{""imageOffset"":5221903879,""imageIndex"":0},{""imageOffset"":25844,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":5},{""imageOffset"":8207,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":5}]},{""id"":1393745,""name"":""NetworkConfigWatcher"",""frames"":[{""imageOffset"":140706042898752,""imageIndex"":0},{""imageOffset"":2746,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":5221921938,""imageIndex"":0},{""imageOffset"":5221921487,""imageIndex"":0},{""imageOffset"":5221036507,""imageIndex"":0},{""imageOffset"":5221475883,""imageIndex"":0},{""imageOffset"":5221230539,""imageIndex"":0},{""imageOffset"":5221603965,""imageIndex"":0},{""imageOffset"":5221903879,""imageIndex"":0},{""imageOffset"":25844,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":5},{""imageOffset"":8207,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":5}]},{""id"":1393746,""name"":""ThreadPoolSingleThreadForegroundBlocking0"",""frames"":[{""imageOffset"":140706042898752,""imageIndex"":0},{""imageOffset"":2746,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":5221921938,""imageIndex"":0},{""imageOffset"":5221921487,""imageIndex"":0},{""imageOffset"":5221562218,""imageIndex"":0},{""imageOffset"":5221564752,""imageIndex"":0},{""imageOffset"":5221563700,""imageIndex"":0},{""imageOffset"":5221903879,""imageIndex"":0},{""imageOffset"":25844,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":5},{""imageOffset"":8207,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":5}]},{""id"":1393820,""name"":""MemoryInfra"",""frames"":[{""imageOffset"":140706042898752,""imageIndex"":0},{""imageOffset"":2746,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":5221921938,""imageIndex"":0},{""imageOffset"":5221921487,""imageIndex"":0},{""imageOffset"":5221036507,""imageIndex"":0},{""imageOffset"":5221475883,""imageIndex"":0},{""imageOffset"":5221230539,""imageIndex"":0},{""imageOffset"":5221603965,""imageIndex"":0},{""imageOffset"":5221903879,""imageIndex"":0},{""imageOffset"":25844,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":5},{""imageOffset"":8207,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":5}]},{""id"":1393890,""frames"":[{""imageOffset"":141332,""imageIndex"":4}]},{""id"":1393892,""frames"":[{""imageOffset"":141332,""imageIndex"":4}]},{""id"":1393920,""name"":""NetworkConfigWatcher"",""frames"":[{""imageOffset"":140706042898752,""imageIndex"":0},{""imageOffset"":2746,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":5221921938,""imageIndex"":0},{""imageOffset"":5221921487,""imageIndex"":0},{""imageOffset"":5221036507,""imageIndex"":0},{""imageOffset"":5221475883,""imageIndex"":0},{""imageOffset"":5221230539,""imageIndex"":0},{""imageOffset"":5221603965,""imageIndex"":0},{""imageOffset"":5221903879,""imageIndex"":0},{""imageOffset"":25844,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":5},{""imageOffset"":8207,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":5}]},{""id"":1393944,""frames"":[{""imageOffset"":141332,""imageIndex"":4}]},{""id"":1393946,""frames"":[{""imageOffset"":141332,""imageIndex"":4}]},{""id"":1394098,""frames"":[{""imageOffset"":141332,""imageIndex"":4}]},{""id"":1394100,""name"":""com.apple.NSEventThread"",""frames"":[{""imageOffset"":140706042898752,""imageIndex"":0},{""imageOffset"":2746,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":523761,""symbol"":""__CFRunLoopServiceMachPort"",""symbolLocation"":319,""imageIndex"":6},{""imageOffset"":517295,""symbol"":""__CFRunLoopRun"",""symbolLocation"":1329,""imageIndex"":6},{""imageOffset"":514217,""symbol"":""CFRunLoopRunSpecific"",""symbolLocation"":567,""imageIndex"":6},{""imageOffset"":140703666794456,""imageIndex"":0},{""imageOffset"":25844,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":5},{""imageOffset"":8207,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":5}]},{""id"":1394102,""name"":""ThreadPoolSingleThreadSharedBackgroundBlocking1"",""frames"":[{""imageOffset"":140706042898752,""imageIndex"":0},{""imageOffset"":2746,""symbol"":""mach_msg_trap"",""symbolLocation"":10,""imageIndex"":1},{""imageOffset"":5221921938,""imageIndex"":0},{""imageOffset"":5221921487,""imageIndex"":0},{""imageOffset"":5221562218,""imageIndex"":0},{""imageOffset"":5221563965,""imageIndex"":0},{""imageOffset"":5221563508,""imageIndex"":0},{""imageOffset"":5221903879,""imageIndex"":0},{""imageOffset"":25844,""symbol"":""_pthread_start"",""symbolLocation"":125,""imageIndex"":5},{""imageOffset"":8207,""symbol"":""thread_start"",""symbolLocation"":15,""imageIndex"":5}]},{""id"":1395050,""frames"":[{""imageOffset"":141332,""imageIndex"":4}]},{""id"":1395051,""frames"":[{""imageOffset"":141332,""imageIndex"":4}]},{""id"":1395057,""frames"":[{""imageOffset"":141332,""imageIndex"":4}]},{""id"":1395058,""frames"":[{""imageOffset"":141332,""imageIndex"":4}]},{""id"":1395781,""frames"":[{""imageOffset"":141332,""imageIndex"":4}]}], ""usedImages"" : [ { ""size"" : 0, ""source"" : ""A"", ""base"" : 0, ""uuid"" : ""00000000-0000-0000-0000-000000000000"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 140703620894720, ""size"" : 225280, ""uuid"" : ""c1d58a50-5a4d-3bcb-a1fc-ec0902ce34d3"", ""path"" : ""\/usr\/lib\/system\/libsystem_kernel.dylib"", ""name"" : ""libsystem_kernel.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 140703619878912, ""size"" : 561152, ""uuid"" : ""4b160c81-ec52-3243-aaba-49f719bbf617"", ""path"" : ""\/usr\/lib\/system\/libsystem_c.dylib"", ""name"" : ""libsystem_c.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 140703621218304, ""size"" : 40960, ""uuid"" : ""f4a8a6fb-7eb7-3794-9196-39b494573a33"", ""path"" : ""\/usr\/lib\/system\/libsystem_platform.dylib"", ""name"" : ""libsystem_platform.dylib"" }, { ""source"" : ""P"", ""arch"" : ""arm64"", ""base"" : 140703124533248, ""size"" : 196608, ""uuid"" : ""faca02c7-0a4c-3629-a746-55ddcfee9116"", ""path"" : ""\/usr\/libexec\/rosetta\/runtime"", ""name"" : ""runtime"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 140703621120000, ""size"" : 49152, ""uuid"" : ""ee564342-d8f2-396d-b642-40092cf34d82"", ""path"" : ""\/usr\/lib\/system\/libsystem_pthread.dylib"", ""name"" : ""libsystem_pthread.dylib"" }, { ""source"" : ""P"", ""arch"" : ""x86_64"", ""base"" : 140703621435392, ""CFBundleShortVersionString"" : ""6.9"", ""CFBundleIdentifier"" : ""com.apple.CoreFoundation"", ""size"" : 5246976, ""uuid"" : ""1d1db08b-810c-316e-b9d9-eecdff8ee6e3"", ""path"" : ""\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation"", ""name"" : ""CoreFoundation"", ""CFBundleVersion"" : ""1856.107"" } ], ""sharedCache"" : { ""base"" : 140703617875968, ""size"" : 15218196480, ""uuid"" : ""5c9ff5db-8827-329a-8a37-2483935a9ea1"" }, ""vmSummary"" : ""ReadOnly portion of Libraries: Total=206.0M resident=0K(0%) swapped_out_or_unallocated=206.0M(100%)\nWritable regions: Total=2.1G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.1G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 512K 4 \nActivity Tracing 256K 1 \nCG backing stores 2176K 4 \nCG image 1572K 51 \nColorSync 240K 28 \nCoreAnimation 2488K 22 \nCoreGraphics 12K 2 \nCoreUI image data 4660K 34 \nFoundation 16K 1 \nKernel Alloc Once 8K 1 \nMALLOC 363.2M 70 \nMALLOC guard page 192K 9 \nMALLOC_MEDIUM (reserved) 888.0M 8 reserved VM address space (unallocated)\nMALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)\nMach message 24K 6 \nOpenGL GLSL 384K 5 \nRosetta Arena 4096K 2 \nRosetta Generic 1676K 416 \nRosetta IndirectBranch 2048K 1 \nRosetta JIT 128.0M 1 \nRosetta Return Stack 520K 52 \nRosetta Thread Context 520K 52 \nSTACK GUARD 40K 10 \nStack 133.6M 27 \nStack Guard 56.1M 17 \nVM_ALLOCATE 102.3M 187 \nVM_ALLOCATE (reserved) 160.0M 8 reserved VM address space (unallocated)\n__DATA 355K 45 \n__DATA_CONST 3031K 39 \n__DATA_DIRTY 79K 24 \n__LINKEDIT 193.1M 7 \n__OBJC_RO 81.8M 1 \n__OBJC_RW 3136K 2 \n__TEXT 12.9M 50 \n__UNICODE 588K 1 \ndyld private memory 1024K 1 \nmapped file 6.8G 874 \nshared memory 4056K 35 \nunshared pmap 10.8M 9 \n=========== ======= ======= \nTOTAL 9.3G 2108 \nTOTAL, minus reserved VM space 7.9G 2108 \n"", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""607844aa04477260f58a8077"", ""factorPackIds"" : { ""SIRI_MORPHUN_ASSETS"" : ""6103050cbfe6dc472e1c982a"" }, ""deploymentId"" : 240000066 }, { ""rolloutId"" : ""60da5e84ab0ca017dace9abf"", ""factorPackIds"" : { }, ""deploymentId"" : 240000008 }, { ""rolloutId"" : ""602ad4dac86151000cf27e46"", ""factorPackIds"" : { ""SIRI_DICTATION_ASSETS"" : ""61fb0e87c773c43cde3bb80e"" }, ""deploymentId"" : 240000303 }, { ""rolloutId"" : ""60356660bbe37970735c5624"", ""factorPackIds"" : { }, ""deploymentId"" : 240000027 }, { ""rolloutId"" : ""601d9415f79519000ccd4b69"", ""factorPackIds"" : { ""SIRI_TEXT_TO_SPEECH"" : ""622657ce37186c771d5404ad"" }, ""deploymentId"" : 240000416 }, { ""rolloutId"" : ""5ffde50ce2aacd000d47a95f"", ""factorPackIds"" : { }, ""deploymentId"" : 240000123 }, { ""rolloutId"" : ""5fc94383418129005b4e9ae0"", ""factorPackIds"" : { }, ""deploymentId"" : 240000287 } ], ""experiments"" : [ ] } } ===== Log before crash start ===== UCSF ChimeraX version: 1.3 (2021-12-08) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX Updating list of available bundles failed: Internal Server Error ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.3 (2021-12-08) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 76.3 OpenGL renderer: Apple M1 OpenGL vendor: AppleHardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro17,1 Processor Name: Unknown Processor Speed: 2.4 GHz Number of Processors: 1 Total Number of Cores: 8 L2 Cache: 8 MB Memory: 16 GB Software: System Software Overview: System Version: macOS 12.2.1 (21D62) Kernel Version: Darwin 21.3.0 Time since boot: 5 days 7:24 Graphics/Displays: Apple M1: Chipset Model: Apple M1 Type: GPU Bus: Built-In Total Number of Cores: 8 Vendor: Apple (0x106b) Metal Family: Supported, Metal GPUFamily Apple 7 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal Locale: (None, 'UTF-8') PyQt5 5.15.2, Qt 5.15.2 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.2 Babel: 2.9.1 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2021.5.30 cftime: 1.5.1.1 charset-normalizer: 2.0.9 ChimeraX-AddCharge: 1.2.2 ChimeraX-AddH: 2.1.11 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.2.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.31 ChimeraX-AtomicLibrary: 4.2 ChimeraX-AtomSearch: 2.0 ChimeraX-AtomSearchLibrary: 1.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.0 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.6.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.2 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.2 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5 ChimeraX-CommandLine: 1.1.5 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.3 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1.5 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.1.2 ChimeraX-Help: 1.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0 ChimeraX-Label: 1.1 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.4 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 2.0.4 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.4 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.2.6 ChimeraX-ModelPanel: 1.2.1 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.2 ChimeraX-OpenCommand: 1.7 ChimeraX-PDB: 2.6.5 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.4.6 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.1 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.6.1 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1 ChimeraX-ToolshedUtils: 1.2 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.13.7 ChimeraX-uniprot: 2.2 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.0.1 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.4 cxservices: 1.1 cycler: 0.11.0 Cython: 0.29.24 decorator: 5.1.0 docutils: 0.17.1 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 3.6.0 html2text: 2020.1.16 idna: 3.3 ihm: 0.21 imagecodecs: 2021.4.28 imagesize: 1.3.0 ipykernel: 5.5.5 ipython: 7.23.1 ipython-genutils: 0.2.0 jedi: 0.18.0 Jinja2: 3.0.1 jupyter-client: 6.1.12 jupyter-core: 4.9.1 kiwisolver: 1.3.2 lxml: 4.6.3 lz4: 3.1.3 MarkupSafe: 2.0.1 matplotlib: 3.4.3 matplotlib-inline: 0.1.3 msgpack: 1.0.2 netCDF4: 1.5.7 networkx: 2.6.3 numexpr: 2.8.0 numpy: 1.21.2 openvr: 1.16.801 packaging: 21.0 ParmEd: 3.2.0 parso: 0.8.3 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 8.3.2 pip: 21.2.4 pkginfo: 1.7.1 prompt-toolkit: 3.0.23 psutil: 5.8.0 ptyprocess: 0.7.0 pycollada: 0.7.1 pydicom: 2.1.2 Pygments: 2.10.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.6 PyQt5-commercial: 5.15.2 PyQt5-sip: 12.8.1 PyQtWebEngine-commercial: 5.15.2 python-dateutil: 2.8.2 pytz: 2021.3 pyzmq: 22.3.0 qtconsole: 5.1.1 QtPy: 1.11.3 RandomWords: 0.3.0 requests: 2.26.0 scipy: 1.7.1 setuptools: 57.5.0 sfftk-rw: 0.7.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 4.2.0 sphinx-autodoc-typehints: 1.12.0 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-jurko: 0.6 tifffile: 2021.4.8 tinyarray: 1.2.3 tornado: 6.1 traitlets: 5.1.1 urllib3: 1.26.7 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.37.0 wheel-filename: 1.3.0 }}} " defect assigned normal Window Toolkit all ChimeraX