id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 6341 Graphics crash, macOS 11.6.3, Intel Iris Pro georgios.hatzopoulos@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-10.16-x86_64-i386-64bit ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Aborted Current thread 0x0000000118476e00 (most recent call first): File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/opengl.py"", line 1166 in draw_background File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/camera.py"", line 184 in draw_background File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py"", line 215 in _draw_scene File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py"", line 165 in draw File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py"", line 73 in draw_new_frame File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py"", line 139 in _redraw_timer_callback File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py"", line 301 in event_loop File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py"", line 867 in init File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py"", line 1018 in File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 87 in _run_code File ""/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 197 in _run_module_as_main Process: ChimeraX [29025] Path: /Applications/ChimeraX-1.3.app/Contents/MacOS/ChimeraX Identifier: edu.ucsf.cgl.ChimeraX Version: 1.3.0 (1.3.0.0) Code Type: X86-64 (Native) Parent Process: ??? [1] Responsible: ChimeraX [29025] User ID: 502 Date/Time: 2022-03-09 10:47:40.694 +0100 OS Version: macOS 11.6.3 (20G415) Report Version: 12 Anonymous UUID: 3AA2F9B4-566F-8F25-365E-C40BA038C10D Sleep/Wake UUID: AF1AF51B-E72B-4832-BEB8-C6FBD1635690 Time Awake Since Boot: 100000 seconds Time Since Wake: 2800 seconds System Integrity Protection: enabled Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread Exception Type: EXC_CRASH (SIGABRT) Exception Codes: 0x0000000000000000, 0x0000000000000000 Exception Note: EXC_CORPSE_NOTIFY Application Specific Information: abort() called Application Specific Signatures: Graphics hardware encountered an error and was reset: 0x0000002b Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread 0 libsystem_kernel.dylib 0x00007fff205e892e __pthread_kill + 10 1 libsystem_pthread.dylib 0x00007fff206175bd pthread_kill + 263 2 libsystem_c.dylib 0x00007fff204fbbd5 raise + 26 3 libsystem_platform.dylib 0x00007fff2065cd7d _sigtramp 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0x00007fff2dbf822d ffi_call_int + 699 490 libffi.dylib 0x00007fff2dbf822d ffi_call_int + 699 491 libffi.dylib 0x00007fff2dbf822d ffi_call_int + 699 492 libffi.dylib 0x00007fff2dbf822d ffi_call_int + 699 493 libffi.dylib 0x00007fff2dbf822d ffi_call_int + 699 494 libffi.dylib 0x00007fff2dbf822d ffi_call_int + 699 495 libffi.dylib 0x00007fff2dbf822d ffi_call_int + 699 496 libffi.dylib 0x00007fff2dbf822d ffi_call_int + 699 497 libffi.dylib 0x00007fff2dbf822d ffi_call_int + 699 498 libffi.dylib 0x00007fff2dbf822d ffi_call_int + 699 499 libffi.dylib 0x00007fff2dbf822d ffi_call_int + 699 500 libffi.dylib 0x00007fff2dbf822d ffi_call_int + 699 501 libffi.dylib 0x00007fff2dbf822d ffi_call_int + 699 502 libffi.dylib 0x00007fff2dbf822d ffi_call_int + 699 503 libffi.dylib 0x00007fff2dbf822d ffi_call_int + 699 504 libffi.dylib 0x00007fff2dbf822d ffi_call_int + 699 505 libffi.dylib 0x00007fff2dbf822d ffi_call_int + 699 506 libffi.dylib 0x00007fff2dbf822d ffi_call_int + 699 507 libffi.dylib 0x00007fff2dbf822d ffi_call_int + 699 508 libffi.dylib 0x00007fff2dbf822d ffi_call_int + 699 509 libffi.dylib 0x00007fff2dbf822d ffi_call_int + 699 510 libffi.dylib 0x00007fff2dbf822d ffi_call_int + 699 511 libffi.dylib 0x00007fff2dbf822d ffi_call_int + 699 Thread 1: 0 libsystem_kernel.dylib 0x00007fff205e4cde __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff20617e49 _pthread_cond_wait + 1298 2 libopenblas.0.dylib 0x0000000109bf7a9f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff206178fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff20613443 thread_start + 15 Thread 2: 0 libsystem_kernel.dylib 0x00007fff205e4cde __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff20617e49 _pthread_cond_wait + 1298 2 libopenblas.0.dylib 0x0000000109bf7a9f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff206178fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff20613443 thread_start + 15 Thread 3: 0 libsystem_kernel.dylib 0x00007fff205e4cde __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff20617e49 _pthread_cond_wait + 1298 2 libopenblas.0.dylib 0x0000000109bf7a9f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff206178fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff20613443 thread_start + 15 Thread 4:: ThreadPoolServiceThread 0 libsystem_kernel.dylib 0x00007fff205eb1d2 kevent64 + 10 1 QtWebEngineCore 0x000000011cf82e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330 2 QtWebEngineCore 0x000000011cf82cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167 3 QtWebEngineCore 0x000000011cf0b62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 4 QtWebEngineCore 0x000000011cecf7cb base::RunLoop::Run() + 395 5 QtWebEngineCore 0x000000011cf16a94 base::internal::ServiceThread::Run(base::RunLoop*) + 20 6 QtWebEngineCore 0x000000011cf2aa7d base::Thread::ThreadMain() + 413 7 QtWebEngineCore 0x000000011cf73e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff206178fc _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff20613443 thread_start + 15 Thread 5:: ThreadPoolBackgroundWorker 0 libsystem_kernel.dylib 0x00007fff205e22ba mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff205e262c mach_msg + 60 2 QtWebEngineCore 0x000000011cf78492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000011cf20778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56 4 QtWebEngineCore 0x000000011cf21150 base::internal::WorkerThread::RunWorker() + 1024 5 QtWebEngineCore 0x000000011cf20c44 base::internal::WorkerThread::RunBackgroundPooledWorker() + 20 6 QtWebEngineCore 0x000000011cf73e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 7 libsystem_pthread.dylib 0x00007fff206178fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff20613443 thread_start + 15 Thread 6:: Chrome_IOThread 0 libsystem_kernel.dylib 0x00007fff205eb1d2 kevent64 + 10 1 QtWebEngineCore 0x000000011cf82e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330 2 QtWebEngineCore 0x000000011cf82cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167 3 QtWebEngineCore 0x000000011cf0b62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 4 QtWebEngineCore 0x000000011cecf7cb base::RunLoop::Run() + 395 5 QtWebEngineCore 0x0000000120e4ff06 content::BrowserProcessSubThread::IOThreadRun(base::RunLoop*) + 102 6 QtWebEngineCore 0x000000011cf2aa7d base::Thread::ThreadMain() + 413 7 QtWebEngineCore 0x000000011cf73e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff206178fc _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff20613443 thread_start + 15 Thread 7:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff205e22ba mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff205e262c mach_msg + 60 2 QtWebEngineCore 0x000000011cf78492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000011cf782cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x000000011cea01db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x000000011cf0b62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x000000011cecf7cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x000000011cf2aa7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x000000011cf73e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff206178fc _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff20613443 thread_start + 15 Thread 8:: CompositorTileWorker1 0 libsystem_kernel.dylib 0x00007fff205e4cde __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff20617e49 _pthread_cond_wait + 1298 2 QtWebEngineCore 0x000000011cf6fe18 base::ConditionVariable::Wait() + 104 3 QtWebEngineCore 0x000000011e2275f8 non-virtual thunk to cc::SingleThreadTaskGraphRunner::Run() + 56 4 QtWebEngineCore 0x000000011cf73e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 5 libsystem_pthread.dylib 0x00007fff206178fc _pthread_start + 224 6 libsystem_pthread.dylib 0x00007fff20613443 thread_start + 15 Thread 9:: Chrome_InProcGpuThread 0 libsystem_kernel.dylib 0x00007fff205e22ba mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff205e262c mach_msg + 60 2 QtWebEngineCore 0x000000011cf78492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000011cea020f base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 223 4 QtWebEngineCore 0x000000011cf0b62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 5 QtWebEngineCore 0x000000011cecf7cb base::RunLoop::Run() + 395 6 QtWebEngineCore 0x000000011cf2aa7d base::Thread::ThreadMain() + 413 7 QtWebEngineCore 0x000000011cf73e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff206178fc _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff20613443 thread_start + 15 Thread 10:: Chrome_ChildIOThread 0 libsystem_kernel.dylib 0x00007fff205eb1d2 kevent64 + 10 1 QtWebEngineCore 0x000000011cf82e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330 2 QtWebEngineCore 0x000000011cf82cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167 3 QtWebEngineCore 0x000000011cf0b62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 4 QtWebEngineCore 0x000000011cecf7cb base::RunLoop::Run() + 395 5 QtWebEngineCore 0x000000011cf2aa7d base::Thread::ThreadMain() + 413 6 QtWebEngineCore 0x000000011cf73e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 7 libsystem_pthread.dylib 0x00007fff206178fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff20613443 thread_start + 15 Thread 11:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff205e22ba mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff205e262c mach_msg + 60 2 QtWebEngineCore 0x000000011cf78492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000011cf782cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x000000011cea01db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x000000011cf0b62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x000000011cecf7cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x000000011cf2aa7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x000000011cf73e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff206178fc _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff20613443 thread_start + 15 Thread 12:: VizCompositorThread 0 libsystem_kernel.dylib 0x00007fff205e22ba mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff205e262c mach_msg + 60 2 QtWebEngineCore 0x000000011cf78492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000011cf782cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x000000011cea01db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x000000011cf0b62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x000000011cecf7cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x000000011cf2aa7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x000000011cf73e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff206178fc _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff20613443 thread_start + 15 Thread 13:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff205e22ba mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff205e262c mach_msg + 60 2 QtWebEngineCore 0x000000011cf78492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000011cf782cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x000000011cea01db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x000000011cf0b62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x000000011cecf7cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x000000011cf2aa7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x000000011cf73e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff206178fc _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff20613443 thread_start + 15 Thread 14:: ThreadPoolSingleThreadForegroundBlocking0 0 libsystem_kernel.dylib 0x00007fff205e22ba mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff205e262c mach_msg + 60 2 QtWebEngineCore 0x000000011cf78492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000011cf782cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x000000011cf2076a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42 5 QtWebEngineCore 0x000000011cf21150 base::internal::WorkerThread::RunWorker() + 1024 6 QtWebEngineCore 0x000000011cf20d34 base::internal::WorkerThread::RunDedicatedWorker() + 20 7 QtWebEngineCore 0x000000011cf73e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff206178fc _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff20613443 thread_start + 15 Thread 15:: MemoryInfra 0 libsystem_kernel.dylib 0x00007fff205e22ba mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff205e262c mach_msg + 60 2 QtWebEngineCore 0x000000011cf78492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000011cf782cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x000000011cea01db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x000000011cf0b62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x000000011cecf7cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x000000011cf2aa7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x000000011cf73e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff206178fc _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff20613443 thread_start + 15 Thread 16:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff205e22ba mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff205e262c mach_msg + 60 2 QtWebEngineCore 0x000000011cf78492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000011cf782cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x000000011cea01db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x000000011cf0b62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x000000011cecf7cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x000000011cf2aa7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x000000011cf73e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff206178fc _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff20613443 thread_start + 15 Thread 17:: com.apple.NSEventThread 0 libsystem_kernel.dylib 0x00007fff205e22ba mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff205e262c mach_msg + 60 2 com.apple.CoreFoundation 0x00007fff2070f55f __CFRunLoopServiceMachPort + 316 3 com.apple.CoreFoundation 0x00007fff2070dc3f __CFRunLoopRun + 1328 4 com.apple.CoreFoundation 0x00007fff2070d04c CFRunLoopRunSpecific + 563 5 com.apple.AppKit 0x00007fff2309be3a _NSEventThread + 124 6 libsystem_pthread.dylib 0x00007fff206178fc _pthread_start + 224 7 libsystem_pthread.dylib 0x00007fff20613443 thread_start + 15 Thread 18:: ThreadPoolSingleThreadSharedBackgroundBlocking1 0 libsystem_kernel.dylib 0x00007fff205e22ba mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff205e262c mach_msg + 60 2 QtWebEngineCore 0x000000011cf78492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000011cf782cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x000000011cf2076a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42 5 QtWebEngineCore 0x000000011cf20e3d base::internal::WorkerThread::RunWorker() + 237 6 QtWebEngineCore 0x000000011cf20c74 base::internal::WorkerThread::RunBackgroundSharedWorker() + 20 7 QtWebEngineCore 0x000000011cf73e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff206178fc _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff20613443 thread_start + 15 Thread 19:: ThreadPoolForegroundWorker 0 libsystem_kernel.dylib 0x00007fff205e22ba mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff205e262c mach_msg + 60 2 QtWebEngineCore 0x000000011cf78492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000011cf20778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56 4 QtWebEngineCore 0x000000011cf21150 base::internal::WorkerThread::RunWorker() + 1024 5 QtWebEngineCore 0x000000011cf20cd4 base::internal::WorkerThread::RunPooledWorker() + 20 6 QtWebEngineCore 0x000000011cf73e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 7 libsystem_pthread.dylib 0x00007fff206178fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff20613443 thread_start + 15 Thread 20: 0 libsystem_pthread.dylib 0x00007fff20613420 start_wqthread + 0 Thread 21: 0 libsystem_pthread.dylib 0x00007fff20613420 start_wqthread + 0 Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000000000000 rbx: 0x0000000118476e00 rcx: 0x00007f923f155a58 rdx: 0x0000000000000000 rdi: 0x0000000000000103 rsi: 0x0000000000000006 rbp: 0x00007f923f155a80 rsp: 0x00007f923f155a58 r8: 0x00007f923f155f48 r9: 0xb89c5ca5af3e5a6b r10: 0x0000000118476e00 r11: 0x0000000000000246 r12: 0x0000000000000103 r13: 0x00007f9247ab2000 r14: 0x0000000000000006 r15: 0x0000000000000016 rip: 0x00007fff205e892e rfl: 0x0000000000000246 cr2: 0x0000000118449110 Logical CPU: 0 Error Code: 0x02000148 Trap Number: 133 Thread 0 instruction stream not available. Thread 0 last branch register state not available. 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AGL-3.3.3) /System/Library/Frameworks/AGL.framework/Versions/A/AGL 0x7fff6e27a000 - 0x7fff6e361fff com.apple.audio.AVFAudio (1.0 - 477.88) /System/Library/Frameworks/AVFAudio.framework/Versions/A/AVFAudio 0x7fff6f4f5000 - 0x7fff6f4fffff com.apple.AccessibilityBundles (1.0 - 174) /System/Library/PrivateFrameworks/AccessibilityBundles.framework/Versions/A/AccessibilityBundles 0x7fff6f8e3000 - 0x7fff6f8f5fff com.apple.CMImaging (1.0 - 82.6) /System/Library/PrivateFrameworks/CMImaging.framework/Versions/A/CMImaging 0x7fff73bf8000 - 0x7fff73c03fff com.apple.SymptomAnalytics (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomAnalytics.framework/Versions/A/SymptomAnalytics 0x7fff73e19000 - 0x7fff73e31fff com.apple.SymptomPresentationFeed (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomPresentationFeed.framework/Versions/A/SymptomPresentationFeed 0x7fff77741000 - 0x7fff77748fff libRosetta.dylib (203.58) /usr/lib/libRosetta.dylib External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 0 thread_create: 0 thread_set_state: 0 VM Region Summary: ReadOnly portion of Libraries: Total=1.1G resident=0K(0%) swapped_out_or_unallocated=1.1G(100%) Writable regions: Total=2.2G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.2G(100%) VIRTUAL REGION REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Accelerate framework 384K 3 Activity Tracing 256K 1 CG backing stores 7200K 6 CG image 228K 21 CoreAnimation 112K 13 CoreGraphics 12K 2 CoreServices 16K 1 CoreUI image data 3320K 32 Foundation 40K 2 Kernel Alloc Once 8K 1 MALLOC 1.7G 1747 MALLOC guard page 32K 8 MALLOC_LARGE (reserved) 1504K 8 reserved VM address space (unallocated) MALLOC_NANO (reserved) 128.0M 1 reserved VM address space (unallocated) Mach message 24K 3 OpenGL GLSL 384K 5 STACK GUARD 84K 21 Stack 131.2M 22 Stack Guard 56.0M 1 VM_ALLOCATE 214.8M 191 VM_ALLOCATE (reserved) 32.0M 1 reserved VM address space (unallocated) __DATA 31.1M 578 __DATA_CONST 31.7M 275 __DATA_DIRTY 1270K 174 __FONT_DATA 4K 1 __GLSLBUILTINS 5176K 1 __LINKEDIT 590.8M 131 __OBJC_RO 70.3M 1 __OBJC_RW 2496K 2 __TEXT 583.9M 558 __UNICODE 588K 1 mapped file 712.1M 102 shared memory 2952K 23 =========== ======= ======= TOTAL 4.3G 3937 TOTAL, minus reserved VM space 4.1G 3937 ===== Log before crash start ===== UCSF ChimeraX version: 1.3 (2021-12-08) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open > /Users/ghatz/Dropbox/MyDocs/PROJECTS/HumanMTs/No_tail_Titan/cryosparc_P55_J84_006_volume_map.mrc Opened cryosparc_P55_J84_006_volume_map.mrc as #1, grid size 600,600,600, pixel 0.926, shown at level 0.0923, step 4, values float32 > open > /Users/ghatz/Dropbox/MyDocs/PROJECTS/HumanMTs/No_tail_Titan/cryosparc_P55_J84_006_volume_mask_refine.mrc Opened cryosparc_P55_J84_006_volume_mask_refine.mrc as #2, grid size 600,600,600, pixel 0.926, shown at level 1, step 4, values float32 > set bgColor white > volume #1 level 0.04413 > measure symmetry #1 helix 10,-30,opt Symmetry cryosparc_P55_J84_006_volume_map.mrc: Helix, rise 9.462, angle -27.68, center 300 300 298, n 59 > open pdb:1jff Summary of feedback from opening 1jff fetched from pdb --- warnings | Unknown polymer entity '6' near line 8368 Missing or incomplete entity_poly_seq table. Inferred polymer connectivity. 1jff title: Refined structure of alpha-beta tubulin from zinc-induced sheets stabilized with taxol [more info...] Chain information for 1jff #3 --- Chain | Description A | tubulin α chain B | tubulin β chain Non-standard residues in 1jff #3 --- GTP — guanosine-5'-triphosphate MG — magnesium ion TA1 — TAXOL ZN — zinc ion > select #3 6702 atoms, 6858 bonds, 2 pseudobonds, 843 residues, 3 models selected > ui mousemode right ""translate selected models"" > view matrix models #3,1,0,0,410.54,0,1,0,75.86,0,0,1,91.343 > view matrix models #3,1,0,0,385.17,0,1,0,271.11,0,0,1,105.28 > view matrix models #3,1,0,0,376.32,0,1,0,298.71,0,0,1,173.74 > ui mousemode right ""rotate selected models"" > view matrix models > #3,-0.37614,-0.53097,-0.75933,403.62,-0.23828,0.84738,-0.47451,304.92,0.8954,0.0024512,-0.44526,164.39 > volume #1 level 0.05908 > volume #1 level 0.0869 > show #3 cartoons > view matrix models > #3,-0.18006,-0.45859,-0.87021,400.86,-0.16747,0.88605,-0.43229,303.56,0.9693,0.0679,-0.23634,162.23 > view matrix models > #3,-0.16741,-0.82373,-0.5417,397.05,-0.21677,0.56676,-0.79485,304.77,0.96176,-0.015643,-0.27345,162.14 > ui mousemode right ""translate selected models"" > view matrix models > #3,-0.16741,-0.82373,-0.5417,398.43,-0.21677,0.56676,-0.79485,295.78,0.96176,-0.015643,-0.27345,163.25 > ui mousemode right ""rotate selected models"" > ui tool show ""Side View"" > view matrix models > #3,-0.18284,-0.85025,-0.4936,398.34,-0.24269,0.52556,-0.81541,296.17,0.95272,-0.029297,-0.30244,163.5 > view matrix models > #3,-0.12776,-0.73563,-0.66522,398.78,-0.2178,0.67516,-0.70479,295.88,0.9676,0.054837,-0.24648,163.36 > view matrix models > #3,-0.082176,-0.47167,-0.87794,400.37,-0.18607,0.87269,-0.45144,294.96,0.97909,0.12626,-0.15948,163.05 > view matrix models > #3,-0.11896,-0.45162,-0.88425,401.2,0.02392,0.88901,-0.45727,291.1,0.99261,-0.075548,-0.094954,161.43 > ui tool show ""Fit in Map"" Fit molecule 1jff (#3) to map cryosparc_P55_J84_006_volume_map.mrc (#1) using 6702 atoms average map value = 0.06226, steps = 128 shifted from previous position = 10.4 rotated from previous position = 5.89 degrees atoms outside contour = 5537, contour level = 0.086896 Position of 1jff (#3) relative to cryosparc_P55_J84_006_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.06525298 -0.38770290 -0.91947186 390.44555587 0.07911315 0.91652517 -0.39207489 292.15400451 0.99472768 -0.09832637 -0.02913361 162.98639501 Axis 0.14745852 -0.96090706 0.23433651 Axis point 119.43582149 0.00000000 315.93223940 Rotation angle (degrees) 95.10209468 Shift along axis -184.96466079 > view matrix models > #3,0.24517,-0.5926,-0.76728,382.74,0.17968,0.80549,-0.56471,290.59,0.95268,0.00058032,0.30396,162.54 > view matrix models > #3,0.43678,-0.26485,-0.8597,381.26,0.25902,-0.87817,0.40214,275.48,-0.86147,-0.39833,-0.31496,198.06 > view matrix models > #3,0.4036,0.44828,-0.79759,385.19,0.51022,-0.83389,-0.2105,274.16,-0.75946,-0.32199,-0.56528,197.83 > view matrix models > #3,0.50272,0.39394,-0.76947,382.89,-0.0095012,-0.88756,-0.4606,285.03,-0.8644,0.23886,-0.44245,202.02 > view matrix models > #3,0.23354,0.76621,-0.59865,388.98,-0.01531,-0.6127,-0.79017,288.26,-0.97223,0.1937,-0.13136,202.2 Fit molecule 1jff (#3) to map cryosparc_P55_J84_006_volume_map.mrc (#1) using 6702 atoms average map value = 0.06469, steps = 104 shifted from previous position = 6.31 rotated from previous position = 10.9 degrees atoms outside contour = 5473, contour level = 0.086896 Position of 1jff (#3) relative to cryosparc_P55_J84_006_volume_map.mrc (#1) coordinates: Matrix rotation and translation 0.06466523 0.75564888 -0.65177694 388.49734025 -0.09124864 -0.64593015 -0.75792343 292.97509915 -0.99372637 0.10848505 0.02718271 198.17545384 Axis 0.68822677 0.27162563 -0.67272835 Axis point 0.00000000 -18.15946071 349.42237717 Rotation angle (degrees) 140.99045447 Shift along axis 213.63556944 Fit molecule 1jff (#3) to map cryosparc_P55_J84_006_volume_map.mrc (#1) using 6702 atoms average map value = 0.06469, steps = 48 shifted from previous position = 0.00761 rotated from previous position = 0.0161 degrees atoms outside contour = 5472, contour level = 0.086896 Position of 1jff (#3) relative to cryosparc_P55_J84_006_volume_map.mrc (#1) coordinates: Matrix rotation and translation 0.06479589 0.75549208 -0.65194571 388.49962172 -0.09135550 -0.64608418 -0.75777925 292.98249911 -0.99370804 0.10865981 0.02715476 198.17545500 Axis 0.68828570 0.27149067 -0.67272253 Axis point 0.00000000 -18.09594323 349.40665468 Rotation angle (degrees) 140.99279040 Shift along axis 213.62365640 > volume #1 step 2 > ui mousemode right ""translate selected models"" > view matrix models > #3,0.064796,0.75549,-0.65195,384.06,-0.091356,-0.64608,-0.75778,313.14,-0.99371,0.10866,0.027155,207.49 > ui mousemode right ""rotate selected models"" > view matrix models > #3,-0.15803,0.49798,-0.85267,388.02,-0.094089,0.852,0.51502,314.13,0.98294,0.16162,-0.087787,170.98 > view matrix models > #3,-0.14464,0.14713,-0.97849,386.64,-0.10954,0.98043,0.16361,316.92,0.9834,0.13084,-0.12569,171.01 > ui mousemode right ""translate selected models"" > view matrix models > #3,-0.14464,0.14713,-0.97849,388.36,-0.10954,0.98043,0.16361,294.31,0.9834,0.13084,-0.12569,189.41 Fit molecule 1jff (#3) to map cryosparc_P55_J84_006_volume_map.mrc (#1) using 6702 atoms average map value = 0.08715, steps = 108 shifted from previous position = 8.55 rotated from previous position = 15.8 degrees atoms outside contour = 3493, contour level = 0.086896 Position of 1jff (#3) relative to cryosparc_P55_J84_006_volume_map.mrc (#1) coordinates: Matrix rotation and translation -0.00040765 0.35059015 -0.93652889 390.60576144 0.01161322 0.93646748 0.35056211 291.72770857 0.99993248 -0.01073321 -0.00445322 195.59603742 Axis -0.18075338 -0.96879732 -0.16958766 Axis point 103.21760373 0.00000000 232.24393518 Rotation angle (degrees) 91.95970839 Shift along axis -386.39900558 > transparency #1 20 > transparency #1 30 > rainbow chains #3 Expected a keyword > rainbow chains > sym #3 group sgift,2,81.2*h,9.42,-27.68, 13 coord #1 Expected a keyword > sym #3 group shift,2,81.2*h,9.42,-27.68, 13 coord #1 Expected a keyword > sym #3 shift,2,81.2*h,9.42,-27.68, 13 coord #1 Expected a keyword > sym #3 shift,2,81.2*h,9.42,-27.68, 13 Expected a keyword > volume #1 level 0.0847 > sym #3 shift,2,81.2 > sym #3 shift,2,81.2*helix,9.46,-27.68,13 > ~sym Unknown command: ~sym > ~symsym clear Unknown command: ~symsym clear > sym clear > sym delete Missing or invalid ""structures"" argument: invalid atomic structures specifier > close #4 > show #!3 models > ~select #3 Nothing selected > sym #3 shift,2,81.2*helix,9.46,-27.68,13 > sym clear > view > sym #3 shift,2,81.2*helix,9.46,-27.68,13 coordinateSystem #1 > sym clear > sym #3 shift,2,81.2*helix,9.46,-27.68,13 coordinateSystem #1 > sym clear > sym #3 shift,2,81.2*helix,9.46,-27.68,13 center 300,300,298 > sym clear > measure symmetry #1 helix 10,-30,opt Symmetry cryosparc_P55_J84_006_volume_map.mrc: Helix, rise 9.464, angle -27.67, center 300 300 294, n 59 > sym #3 shift,2,81.2*helix,9.464,-27.67,13 center 300,300,294 > lighting flat > graphics silhouettes false ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.3 (2021-12-08) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open > /Users/ghatz/Dropbox/MyDocs/PROJECTS/HumanMTs/No_tail_Titan/P55_J84_006_volume_mask_seam.mrc Opened P55_J84_006_volume_mask_seam.mrc as #1, grid size 600,600,600, pixel 0.926, shown at level 1, step 4, values float32 OpenGL version: 4.1 NVIDIA-16.0.13 OpenGL renderer: NVIDIA GeForce GT 750M OpenGL Engine OpenGL vendor: NVIDIA CorporationHardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro11,3 Processor Name: Quad-Core Intel Core i7 Processor Speed: 2.5 GHz Number of Processors: 1 Total Number of Cores: 4 L2 Cache (per Core): 256 KB L3 Cache: 6 MB Hyper-Threading Technology: Enabled Memory: 16 GB System Firmware Version: 432.60.3.0.0 SMC Version (system): 2.19f12 Software: System Software Overview: System Version: macOS 11.6.3 (20G415) Kernel Version: Darwin 20.6.0 Time since boot: 5 days 21:36 Graphics/Displays: Intel Iris Pro: Chipset Model: Intel Iris Pro Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x0d26 Revision ID: 0x0008 Automatic Graphics Switching: Supported gMux Version: 4.0.8 [3.2.8] Metal Family: Supported, Metal GPUFamily macOS 1 NVIDIA GeForce GT 750M: Chipset Model: NVIDIA GeForce GT 750M Type: GPU Bus: PCIe PCIe Lane Width: x8 VRAM (Total): 2 GB Vendor: NVIDIA (0x10de) Device ID: 0x0fe9 Revision ID: 0x00a2 ROM Revision: 3776 Automatic Graphics Switching: Supported gMux Version: 4.0.8 [3.2.8] Metal Family: Supported, Metal GPUFamily macOS 1 Displays: U32R59x: Resolution: 6400 x 3600 UI Looks like: 3200 x 1800 @ 30.00Hz Framebuffer Depth: 24-Bit Color (ARGB8888) Display Serial Number: H4ZN300216 Main Display: Yes Mirror: Off Online: Yes Rotation: Supported Automatically Adjust Brightness: Yes Locale: (None, 'UTF-8') PyQt5 5.15.2, Qt 5.15.2 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.2 Babel: 2.9.1 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2021.5.30 cftime: 1.5.1.1 charset-normalizer: 2.0.9 ChimeraX-AddCharge: 1.2.2 ChimeraX-AddH: 2.1.11 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.2.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.31 ChimeraX-AtomicLibrary: 4.2 ChimeraX-AtomSearch: 2.0 ChimeraX-AtomSearchLibrary: 1.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.0 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.6.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.2 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.2 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5 ChimeraX-CommandLine: 1.1.5 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.3 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1.5 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.1.2 ChimeraX-Help: 1.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0 ChimeraX-Label: 1.1 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.4 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 2.0.4 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.4 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.2.6 ChimeraX-ModelPanel: 1.2.1 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.2 ChimeraX-OpenCommand: 1.7 ChimeraX-PDB: 2.6.5 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.4.6 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.1 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.6.1 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1 ChimeraX-ToolshedUtils: 1.2 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.13.7 ChimeraX-uniprot: 2.2 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.0.1 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.4 cxservices: 1.1 cycler: 0.11.0 Cython: 0.29.24 decorator: 5.1.0 docutils: 0.17.1 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 3.6.0 html2text: 2020.1.16 idna: 3.3 ihm: 0.21 imagecodecs: 2021.4.28 imagesize: 1.3.0 ipykernel: 5.5.5 ipython: 7.23.1 ipython-genutils: 0.2.0 jedi: 0.18.0 Jinja2: 3.0.1 jupyter-client: 6.1.12 jupyter-core: 4.9.1 kiwisolver: 1.3.2 lxml: 4.6.3 lz4: 3.1.3 MarkupSafe: 2.0.1 matplotlib: 3.4.3 matplotlib-inline: 0.1.3 msgpack: 1.0.2 netCDF4: 1.5.7 networkx: 2.6.3 numexpr: 2.8.0 numpy: 1.21.2 openvr: 1.16.801 packaging: 21.0 ParmEd: 3.2.0 parso: 0.8.3 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 8.3.2 pip: 21.2.4 pkginfo: 1.7.1 prompt-toolkit: 3.0.23 psutil: 5.8.0 ptyprocess: 0.7.0 pycollada: 0.7.1 pydicom: 2.1.2 Pygments: 2.10.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.6 PyQt5-commercial: 5.15.2 PyQt5-sip: 12.8.1 PyQtWebEngine-commercial: 5.15.2 python-dateutil: 2.8.2 pytz: 2021.3 pyzmq: 22.3.0 qtconsole: 5.1.1 QtPy: 1.11.3 RandomWords: 0.3.0 requests: 2.26.0 scipy: 1.7.1 setuptools: 57.5.0 sfftk-rw: 0.7.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 4.2.0 sphinx-autodoc-typehints: 1.12.0 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-jurko: 0.6 tifffile: 2021.4.8 tinyarray: 1.2.3 tornado: 6.1 traitlets: 5.1.1 urllib3: 1.26.7 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.37.0 wheel-filename: 1.3.0 }}} " defect closed normal Graphics nonchimerax all ChimeraX