id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 6330 KeyError handling Blast results chimerax-bug-report@… Zach Pearson "{{{ The following bug report has been submitted: Platform: Windows-10-10.0.19042 ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 1.3 (2021-12-08) © 2016-2021 Regents of the University of California. All rights reserved. > open C:\Users\ouou\Desktop\5531.cxs format session registering illegal selector name ""9H"" Log from Tue Mar 8 17:02:23 2022 Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.3 (2021-12-08) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > help help:quickstart > open C:/Users/admin/Desktop/预测/results/3233.py ChimeraX cannot open a regular Chimera session. An exporter from Chimera to ChimeraX is being worked on but is not ready at this time. > open C:/Users/admin/Desktop/预测/results/3233.pyc Python code was compiled for a different version of Python > open C:/Users/admin/Desktop/预测/5531.pdb Chain information for 5531.pdb #1 --- Chain | Description B | No description available C | No description available D | No description available > set bgColor white > select /B 1945 atoms, 1993 bonds, 252 residues, 1 model selected > color sel cornflower blue > select /C 2102 atoms, 2153 bonds, 259 residues, 1 model selected > color sel light sea green > ui tool show ""Color Actions"" > color sel medium aquamarine > color sel dark cyan > color sel cornflower blue > color sel light sea green > color sel medium turquoise > color sel turquoise > color sel dark turquoise > color sel medium sea green > color sel forest green > color sel lime green > color sel spring green > color sel lime > color sel green > color sel sea green > color sel medium sea green > color sel #c0d4ffff > color sel #c4ecffff > color sel #aedfffff > color sel #95daffff > color sel #7ef9ffff > color sel #79ffd9ff > color sel #8bffdeff > color sel #8bffdcff > color sel #99ffebff > color sel #9bffeeff > color sel #9cffefff > color sel #b3fffaff > color sel #79ffe4ff > color sel #74f1ffff > color sel #74ecffff > color sel #60f2ffff > color sel #4cffe1ff > color sel #4bffe1ff > color sel #37f5ffff > color sel #2bedffff > color sel #1effe5ff > color sel #20ffc0ff > color sel #29ffa6ff > color sel #31ffa2ff > color sel #3cffaeff > color sel #50ffcbff > color sel #59ffc8ff > color sel #62ffcbff > color sel #38ffc7ff > color sel #39ffc4ff > color sel #50ffbfff > color sel #4bff9cff > color sel #39ff92ff > color sel #22ff73ff > color sel #17ff59ff > color sel #3dff6eff > color sel #4fff81ff > color sel #53ff84ff > color sel #54ff84ff > color sel #55ff85ff > color sel #57ff87ff > color sel #59ff88ff > color sel #63ff94ff > color sel #65ff96ff > color sel #67ff9aff > color sel #6cff9dff > color sel #6eff9eff > color sel #70ffa0ff > color sel #7effbaff > color sel #8fffc3ff > color sel #98ffbaff > color sel #98ffb9ff > color sel #86ffacff > color sel #75ff98ff > color sel #4effa1ff > color sel #34ff8fff > color sel #34fe8fff > color sel #34fd8eff > color sel #31ef86ff > color sel #30ea84ff > color sel #2fe882ff > color sel #2fe782ff > color sel #2fe581ff > color sel #2ee380ff > color sel #2ee27fff > color sel #2ddf7dff > color sel #2cda7bff > color sel #2bd578ff > color sel #2bd477ff > color sel #2bd175ff > color sel #28c66fff > color sel #26b968ff > color sel #25b666ff > color sel #25b566ff > color sel #24b164ff > color sel #23ac61ff > color sel #22a65dff > color sel #22a55dff > color sel #21a35cff > color sel #209d58ff > color sel #1e9152ff > color sel #1d8f50ff > color sel #1c8a4eff > color sel #197a45ff > color sel #166a3cff > color sel #15673aff > color sel #15683aff > color sel #17703fff > color sel #187642ff > color sel #197c46ff > color sel #1a8149ff > color sel #1c884cff > color sel #1d8f50ff > color sel #1e9353ff > color sel #1e9554ff > color sel #209e59ff > color sel #21a15bff > color sel #21a35cff > color sel #22a55dff > color sel #22a65dff > color sel #22a85eff > color sel #24af62ff > color sel #25b666ff > color sel #26bc6aff > color sel #27be6bff > color sel #27bf6bff > color sel #28c26dff > color sel #29c770ff > color sel #29ca72ff > color sel #3bca8aff > color sel #34cac0ff > color sel #3bc8caff > color sel #3fca9cff > color sel #49ca85ff > color sel #4cca5bff > color sel #59ca62ff > color sel #61ca83ff > color sel #35ca85ff > color sel #28ca64ff > color sel #1aca43ff > color sel #1acb44ff > color sel #1bcf45ff > color sel #1bd045ff > color sel #1bce45ff > color sel #1ac843ff > color sel #19c341ff > color sel #19c140ff > color sel #19bf40ff > color sel #18bd3fff > color sel #19be3fff > color sel #3bbe59ff > color sel #2bbe5cff > color sel #20be74ff > color sel #19be71ff > color sel #13be85ff > color sel #16be81ff > color sel #18be7eff > color sel #1fbe6eff > color sel #1fbe6fff > color sel #21be45ff > color sel #23be20ff > color sel #43be21ff > color sel #51be22ff > color sel #82be27ff > color sel #82be29ff > color sel #7fbe36ff > color sel #81be41ff > color sel #85be48ff > color sel #89be50ff > color sel #7bbe22ff > color sel #99be53ff > color sel #a2be62ff > color sel #99be68ff > color sel #8fbe68ff > color sel #85be56ff > color sel #80be4dff > color sel #7abe43ff > color sel #71be32ff > color sel #6ebe24ff > color sel #6bbe1dff > color sel #6dc11eff > color sel #6dc21eff > color sel #73cc1fff > color sel #7ad921ff > color sel #7fe223ff > color sel #85ec24ff > color sel #8bf826ff > color sel #5ef82fff > color sel #6ef844ff > color sel #77f850ff > color sel #71f859ff > color sel #72f85aff > color sel #76f85fff > color sel #77f860ff > color sel #7af863ff > color sel #8ff86fff > color sel #90f870ff > color sel #93f875ff > color sel #94f876ff > color sel #acf86dff > color sel #b5f876ff > color sel #acf882ff > color sel #9af872ff > color sel #93f86fff > color sel #8bf863ff > color sel #80f85eff > color sel #62f858ff > color sel #aaaa00ff > color sel #00ff00ff > color sel #00aa00ff > color sel #aaaa00ff > color sel #00aa00ff > color sel #05aa05ff > color sel #0eaa13ff > color sel #0faa14ff > color sel #29aa15ff > color sel #24aa1dff > color sel #26aa1fff > color sel #27aa20ff > color sel #2faa29ff > color sel #32aa2cff > color sel #37aa31ff > color sel #38aa32ff > color sel #3aaa34ff > color sel #3caa37ff > color sel #40aa3aff > color sel #43aa3dff > color sel #40aa3eff > color sel #42aa40ff > color sel #55aa00ff > color sel #55ff7fff > color sel #55ff00ff > color sel #55ff7fff > color sel #55aa7fff > color sel #53a77cff > color sel #54a87cff > color sel #56ac7fff > color sel #59b385ff > color sel #5ab586ff > color sel #5dba8aff > color sel #5fbe8dff > color sel #5fbf8dff > color sel #60c18fff > color sel #61c290ff > color sel #63c693ff > color sel #64c894ff > color sel #65ca96ff > color sel #65cb96ff > color sel #66cc97ff > color sel #67cf99ff > color sel #68d19bff > color sel #66d18dff > color sel #66d18eff > color sel #67d18eff > color sel #69d18fff > color sel #6ad190ff > color sel #6ad18cff > color sel #6ad18aff > color sel #6ad187ff > color sel #6ad184ff > color sel #6bd184ff > color sel #6bd182ff > color sel #6bd17fff > color sel #6bd17cff > color sel #6bd17bff > color sel #6bd177ff > color sel #6bd174ff > color sel #6dd175ff > color sel #6ed179ff > color sel #6fd17fff > color sel #6fd182ff > color sel #6fd186ff > color sel #71d18cff > color sel #71d18fff > color sel #72d192ff > select /D 123 atoms, 128 bonds, 15 residues, 1 model selected > show sel target ab > cartoon hide sel > select clear > select /D 123 atoms, 128 bonds, 15 residues, 1 model selected > ui tool show H-Bonds > hbonds sel color #000000 intraMol false intraRes false select true 9 hydrogen bonds found > show sel target ab > name frozen 9H sel registering illegal selector name ""9H"" > name frozen 9H sel registering illegal selector name ""9H"" > name frozen 9H sel registering illegal selector name ""9H"" > show (sel-residues & sidechain) target ab > color sel byhetero > select clear [Repeated 1 time(s)]Drag select of 172 atoms, 159 residues, 174 bonds, 9 pseudobonds > name frozen SHOW sel Drag select of 172 atoms, 511 residues, 174 bonds, 9 pseudobonds > select subtract SHOW 2719 atoms, 352 residues, 1 model selected > cartoon hide sel > select /D 123 atoms, 128 bonds, 15 residues, 1 model selected > color sel light gray > color sel gray > color sel dark gray > color sel byhetero > select clear > toolshed show > ui tool show ""Command Line Interface"" > ui tool show ""Show Sequence Viewer"" > sequence chain /B Alignment identifier is 1/B No visible atoms selected > select /C:69@OH 1 atom, 1 residue, 1 model selected No visible atoms selected > select /C:69@CB 1 atom, 1 residue, 1 model selected > label sel text 37Tyrβ > select clear > select /C:89@OD2 1 atom, 1 residue, 1 model selected > label sel text 57Aspβ > select /C:93@NE1 1 atom, 1 residue, 1 model selected > label sel text 61Trpβ > select /C:46 8 atoms, 7 bonds, 1 residue, 1 model selected No visible atoms selected > select clear > select /B:93@CB 1 atom, 1 residue, 1 model selected > label sel text 70Asnβ No visible atoms selected > select /B:86 8 atoms, 7 bonds, 1 residue, 1 model selected > label sel text 63Asnβ > select /C:114 8 atoms, 7 bonds, 1 residue, 1 model selected > label sel text 82Asnβ > select add /B:34@CD1 1 atom, 1 bond, 1 residue, 1 model selected > hide sel target ab > select add /B:34@CG 1 atom, 2 bonds, 1 residue, 1 model selected > hide sel target ab > select add /B:34@CE1 2 atoms, 3 bonds, 1 residue, 1 model selected > select add /B:34@CE2 3 atoms, 3 bonds, 1 residue, 1 model selected > select add /B:34@CD2 4 atoms, 3 bonds, 1 residue, 1 model selected > hide sel target ab > select /B:34@CZ 1 atom, 1 residue, 1 model selected > select add /B:34@OH 2 atoms, 1 residue, 1 model selected > hide sel target a > hide sel target ab > select add /B:34@CB 3 atoms, 1 bond, 1 residue, 1 model selected > hide sel target a > select clear > label sel attribute name No visible atoms selected > select /D:12@CA 1 atom, 1 residue, 1 model selected > select /D:12@CA 1 atom, 1 residue, 1 model selected > select clear No visible atoms selected [Repeated 1 time(s)] > select /D 123 atoms, 128 bonds, 15 residues, 1 model selected > hide sel target a > show sel target ab > cartoon sel > cartoon hide sel > ui tool show ""Show Sequence Viewer"" > sequence chain /D Alignment identifier is 1/D > select /D:12 6 atoms, 5 bonds, 1 residue, 1 model selected > select /D:12 6 atoms, 5 bonds, 1 residue, 1 model selected > select /D:11 11 atoms, 10 bonds, 1 residue, 1 model selected > select /D:11-12 17 atoms, 16 bonds, 2 residues, 1 model selected > select /D:10 8 atoms, 7 bonds, 1 residue, 1 model selected > select /D:10-11 19 atoms, 18 bonds, 2 residues, 1 model selected > select /D:10 8 atoms, 7 bonds, 1 residue, 1 model selected > select /D:10-12 25 atoms, 24 bonds, 3 residues, 1 model selected > label sel attribute name No visible atoms selected [Repeated 1 time(s)] > select /D:12 6 atoms, 5 bonds, 1 residue, 1 model selected > select /D:12 6 atoms, 5 bonds, 1 residue, 1 model selected > label sel text 230Ser > select /D:11 11 atoms, 10 bonds, 1 residue, 1 model selected > select /D:11 11 atoms, 10 bonds, 1 residue, 1 model selected > label sel text 229Arg > select /D:10 8 atoms, 7 bonds, 1 residue, 1 model selected > select /D:10-11 19 atoms, 18 bonds, 2 residues, 1 model selected > select /D:10 8 atoms, 7 bonds, 1 residue, 1 model selected > select /D:10 8 atoms, 7 bonds, 1 residue, 1 model selected > label sel text 228Leu > select /D:4 6 atoms, 5 bonds, 1 residue, 1 model selected > select /D:4-5 13 atoms, 12 bonds, 2 residues, 1 model selected > select /D:4-5 13 atoms, 12 bonds, 2 residues, 1 model selected > select /D:4-5 13 atoms, 12 bonds, 2 residues, 1 model selected > select /D:4 6 atoms, 5 bonds, 1 residue, 1 model selected > select /D:4 6 atoms, 5 bonds, 1 residue, 1 model selected > label sel text 222Ser > select /D:2 14 atoms, 15 bonds, 1 residue, 1 model selected > label sel text 220Trp > select clear > select /B 1945 atoms, 1993 bonds, 252 residues, 1 model selected > select add /C 4047 atoms, 4146 bonds, 511 residues, 1 model selected > select add /D 4170 atoms, 4274 bonds, 526 residues, 1 model selected > ui tool show ""Color Actions"" > color sel maroon target l > color sel dark red target l > color sel maroon target l > color sel fire brick target l > color sel orange red target l > color sel crimson target l > color sel dark red target l > color sel crimson target l > select clear > ui tool show Contacts > select /D 123 atoms, 128 bonds, 15 residues, 1 model selected > ui tool show Contacts > contacts sel intraMol false color #ffaa00 230 contacts > ui tool show ""Selection Inspector"" > ui tool show ""Command Line Interface"" > toolshed show > select clear > save C:/Users/admin/Desktop/预测/results/5531.cxs ——— End of log from Tue Mar 8 17:02:23 2022 ——— opened ChimeraX session > select /B:85 7 atoms, 6 bonds, 1 residue, 1 model selected > select /B:86 8 atoms, 7 bonds, 1 residue, 1 model selected > label sel text ""63Asn α"" > ui tool show Distances > hide #1.3 models > color #1.1 magenta models transparency 0 > color #1.1 #d7eaf8 models transparency 0 > color #1.1 #cccccc models transparency 0 > color #1.1 red models transparency 0 > color #1.1 #f0f0f0 models transparency 0 > color #1.1 #ff007f models transparency 0 > color #1.1 #aa007f models transparency 0 > color #1.1 #ff557f models transparency 0 > color #1.1 #ff55ff models transparency 0 > color #1.1 magenta models transparency 0 > color #1.1 #5555ff models transparency 0 > color #1.1 #55aa00 models transparency 0 > color #1.1 #00aa7f models transparency 0 > color #1.1 #dce7f0 models transparency 0 > color #1.1 black models transparency 0 > select /B:93 8 atoms, 7 bonds, 1 residue, 1 model selected > label sel text ""70Asn α"" > label height 1 Height must be a number > select /D:8@N 1 atom, 1 residue, 1 model selected > select /B 1945 atoms, 1993 bonds, 252 residues, 1 model selected > ui tool show ""Show Sequence Viewer"" > sequence chain /B Alignment identifier is 1/B > select /B:75-76 20 atoms, 20 bonds, 2 residues, 1 model selected > select /B:75-98 198 atoms, 202 bonds, 24 residues, 1 model selected > select /B:71-75,80-100,210-249 498 atoms, 501 bonds, 66 residues, 1 model selected > select /B:68-69 20 atoms, 21 bonds, 2 residues, 1 model selected > select /B:68-130 497 atoms, 508 bonds, 63 residues, 1 model selected > select /B:1 8 atoms, 7 bonds, 1 residue, 1 model selected > select /B:1-252 1945 atoms, 1993 bonds, 252 residues, 1 model selected > blastprotein 1/B:1 ChimeraX REST job id: TTHL84HJJYOAAA39QMTCTWHW7F4KN4DK3TMW2ME75TP0U5U0797GPI9AMB6DGJ2G BlastProtein finished. Parsing BLAST results. Fetching BLAST PDB info failed: Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\blastprotein\ui\results.py"", line 474, in run self._parse_results(self.database, self.results, self.sequence, self.atomspec) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\blastprotein\ui\results.py"", line 529, in _parse_results blast_results.add_info(self.session, match_chains, sequence_only_hits) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\blastprotein\data_model\databases.py"", line 134, in add_info for k, v in data[chain_id].items(): KeyError: '6PX6_A' KeyError: '6PX6_A' File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\blastprotein\data_model\databases.py"", line 134, in add_info for k, v in data[chain_id].items(): See log for complete Python traceback. > select /C 2102 atoms, 2153 bonds, 259 residues, 1 model selected > ui tool show ""Show Sequence Viewer"" > sequence chain /C Alignment identifier is 1/C > blastprotein 1/C:1 ChimeraX REST job id: FVF6SPPQ7KM46Q5FTASPSMDNKMT2JJQJASMFMT4K8IQOJMCBFXV0NEDDW6NCOXZB BlastProtein finished. Parsing BLAST results. Fetching BLAST PDB info failed: Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\blastprotein\ui\results.py"", line 474, in run self._parse_results(self.database, self.results, self.sequence, self.atomspec) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\blastprotein\ui\results.py"", line 529, in _parse_results blast_results.add_info(self.session, match_chains, sequence_only_hits) File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\blastprotein\data_model\databases.py"", line 134, in add_info for k, v in data[chain_id].items(): KeyError: '6PX6_B' KeyError: '6PX6_B' File ""C:\Program Files\ChimeraX 1.3\bin\lib\site- packages\chimerax\blastprotein\data_model\databases.py"", line 134, in add_info for k, v in data[chain_id].items(): See log for complete Python traceback. OpenGL version: 3.3.0 - Build 26.20.100.7926 OpenGL renderer: Intel(R) UHD Graphics OpenGL vendor: Intel Manufacturer: HUAWEI Model: EUL-WX9 OS: Microsoft Windows 10 家庭中文版 (Build 19042) Memory: 17,003,692,032 MaxProcessMemory: 137,438,953,344 CPU: 8 Intel(R) Core(TM) i5-10210U CPU @ 1.60GHz OSLanguage: zh-CN Locale: ('zh_CN', 'cp936') PyQt5 5.15.2, Qt 5.15.2 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 Babel: 2.9.1 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2021.10.8 cftime: 1.5.1.1 charset-normalizer: 2.0.9 ChimeraX-AddCharge: 1.2.2 ChimeraX-AddH: 2.1.11 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.2.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.31 ChimeraX-AtomicLibrary: 4.2 ChimeraX-AtomSearch: 2.0 ChimeraX-AtomSearchLibrary: 1.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.0 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.6.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.2 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.2 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5 ChimeraX-CommandLine: 1.1.5 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.3 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1.5 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.1.2 ChimeraX-Help: 1.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0 ChimeraX-Label: 1.1 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.4 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 2.0.4 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.4 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.2.6 ChimeraX-ModelPanel: 1.2.1 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.2 ChimeraX-OpenCommand: 1.7 ChimeraX-PDB: 2.6.5 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.4.6 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.1 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.6.1 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1 ChimeraX-ToolshedUtils: 1.2 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.13.7 ChimeraX-uniprot: 2.2 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.0.1 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.4 comtypes: 1.1.10 cxservices: 1.1 cycler: 0.11.0 Cython: 0.29.24 decorator: 5.1.0 docutils: 0.17.1 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 3.6.0 html2text: 2020.1.16 idna: 3.3 ihm: 0.21 imagecodecs: 2021.4.28 imagesize: 1.3.0 ipykernel: 5.5.5 ipython: 7.23.1 ipython-genutils: 0.2.0 jedi: 0.18.0 Jinja2: 3.0.1 jupyter-client: 6.1.12 jupyter-core: 4.9.1 kiwisolver: 1.3.2 lxml: 4.6.3 lz4: 3.1.3 MarkupSafe: 2.0.1 matplotlib: 3.4.3 matplotlib-inline: 0.1.3 msgpack: 1.0.2 netCDF4: 1.5.7 networkx: 2.6.3 numexpr: 2.8.0 numpy: 1.21.2 openvr: 1.16.801 packaging: 21.3 ParmEd: 3.2.0 parso: 0.8.3 pickleshare: 0.7.5 Pillow: 8.3.2 pip: 21.2.4 pkginfo: 1.7.1 prompt-toolkit: 3.0.23 psutil: 5.8.0 pycollada: 0.7.1 pydicom: 2.1.2 Pygments: 2.10.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.6 PyQt5-commercial: 5.15.2 PyQt5-sip: 12.8.1 PyQtWebEngine-commercial: 5.15.2 python-dateutil: 2.8.2 pytz: 2021.3 pywin32: 228 pyzmq: 22.3.0 qtconsole: 5.1.1 QtPy: 1.11.3 RandomWords: 0.3.0 requests: 2.26.0 scipy: 1.7.1 setuptools: 57.5.0 sfftk-rw: 0.7.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 4.2.0 sphinx-autodoc-typehints: 1.12.0 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-jurko: 0.6 tables: 3.6.1 tifffile: 2021.4.8 tinyarray: 1.2.3 tornado: 6.1 traitlets: 5.1.1 urllib3: 1.26.7 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.37.0 wheel-filename: 1.3.0 WMI: 1.5.1 }}} " defect closed normal Sequence fixed Eric Pettersen all ChimeraX