id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 6239 graphics out of memory chimerax-bug-report@… Tom Goddard "The following bug report has been submitted: Platform: Windows-10-10.0.19042 ChimeraX Version: 1.4.dev202202182306 (2022-02-18 23:06:44 UTC) Description (Describe the actions that caused this problem to occur here) Log: Startup Messages --- warning | Your computer has Intel graphics driver 7926 with a known bug that causes all Qt user interface panels to be blank. ChimeraX can partially fix this but may make some panel titlebars and edges black. Hopefully newer Intel graphics drivers will fix this. UCSF ChimeraX version: 1.4.dev202202182306 (2022-02-18) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX open ""C:\Users\Hanan\Documents\ChimeraX-Mariana\7l2h (1).pdb"" format pdb 7l2h (1).pdb title: Cryo-em structure of unliganded full-length TRPV1 At neutral pH [more info...] Chain information for 7l2h (1).pdb #1 --- Chain | Description | UniProt A C D | transient receptor potential cation channel subfamily V member 1 | TRPV1_RAT B | transient receptor potential cation channel subfamily V member 1 | TRPV1_RAT Non-standard residues in 7l2h (1).pdb #1 --- NA — sodium ion XJ7 — (2S)-1-(butanoyloxy)-3-{[(R)-hydroxy{[(1R,2R,3S,4S,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propan-2-yltridecanoate XJD — (10R,13S)-16-amino-13-hydroxy-7,13-dioxo-8,12,14-trioxa-13Λ~5~-phosphahexadecan-10-yl tridecanoate select ::name=""HIS"" 280 atoms, 280 bonds, 28 residues, 1 model selected color sel red coulombic sel Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for 7l2h (1).pdb_A SES surface #1.3: minimum, -18.30, mean -0.30, maximum 14.39 Coulombic values for 7l2h (1).pdb_B SES surface #1.4: minimum, -26.36, mean -0.43, maximum 13.60 Coulombic values for 7l2h (1).pdb_C SES surface #1.5: minimum, -21.22, mean -0.24, maximum 14.14 Coulombic values for 7l2h (1).pdb_D SES surface #1.6: minimum, -19.62, mean -0.30, maximum 14.25 To also show corresponding color key, enter the above coulombic command and add key true undo [Repeated 2 time(s)] select ::name=""HIS"" 280 atoms, 280 bonds, 28 residues, 1 model selected coulombic sel Coulombic values for 7l2h (1).pdb_A SES surface #1.3: minimum, -18.30, mean -0.30, maximum 14.39 Coulombic values for 7l2h (1).pdb_B SES surface #1.4: minimum, -26.36, mean -0.43, maximum 13.60 Coulombic values for 7l2h (1).pdb_C SES surface #1.5: minimum, -21.22, mean -0.24, maximum 14.14 Coulombic values for 7l2h (1).pdb_D SES surface #1.6: minimum, -19.62, mean -0.30, maximum 14.25 To also show corresponding color key, enter the above coulombic command and add key true color sel bychain [Repeated 1 time(s)] undo [Repeated 1 time(s)] select ligand 300 atoms, 296 bonds, 8 residues, 1 model selected select ::name=""ALA"" 660 atoms, 552 bonds, 132 residues, 1 model selected select ligand 300 atoms, 296 bonds, 8 residues, 1 model selected delete atoms sel delete bonds sel select ::name=""ASN"" 704 atoms, 616 bonds, 88 residues, 1 model selected delete atoms (#!1 & sel) delete bonds (#!1 & sel) undo Undo failed, probably because structures have been modified. undo Undo failed, probably because structures have been modified. close session open ""C:\Users\Hanan\Documents\ChimeraX-Mariana\7l2h (1).pdb"" format pdb 7l2h (1).pdb title: Cryo-em structure of unliganded full-length TRPV1 At neutral pH [more info...] Chain information for 7l2h (1).pdb #1 --- Chain | Description | UniProt A C D | transient receptor potential cation channel subfamily V member 1 | TRPV1_RAT B | transient receptor potential cation channel subfamily V member 1 | TRPV1_RAT Non-standard residues in 7l2h (1).pdb #1 --- NA — sodium ion XJ7 — (2S)-1-(butanoyloxy)-3-{[(R)-hydroxy{[(1R,2R,3S,4S,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propan-2-yltridecanoate XJD — (10R,13S)-16-amino-13-hydroxy-7,13-dioxo-8,12,14-trioxa-13Λ~5~-phosphahexadecan-10-yl tridecanoate select ::name=""HIS"" 280 atoms, 280 bonds, 28 residues, 1 model selected color sel red show sel target ab coulombic sel Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for 7l2h (1).pdb_A SES surface #1.3: minimum, -18.30, mean -0.30, maximum 14.39 Coulombic values for 7l2h (1).pdb_B SES surface #1.4: minimum, -26.36, mean -0.43, maximum 13.60 Coulombic values for 7l2h (1).pdb_C SES surface #1.5: minimum, -21.22, mean -0.24, maximum 14.14 Coulombic values for 7l2h (1).pdb_D SES surface #1.6: minimum, -19.62, mean -0.30, maximum 14.25 To also show corresponding color key, enter the above coulombic command and add key true Alignment identifier is 1 Alignment identifier is 1/B An error occurred in drawing the scene. Redrawing graphics is now stopped to avoid a continuous stream of error messages. To restart graphics use the command ""graphics restart"" after changing the settings that caused the error. GLError( err = 1285, description = b'out of memory', baseOperation = glClearColor, cArguments = (0.0, 0.0, 0.0, 0.0) ) Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\core\updateloop.py"", line 73, in draw_new_frame view.draw(check_for_changes = False) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\graphics\view.py"", line 156, in draw r.set_background_color(self.background_color) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 1162, in set_background_color GL.glClearColor(r, g, b, a) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glClearColor, cArguments = (0.0, 0.0, 0.0, 0.0) ) Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\statusbar.py"", line 84, in _expose_event self.status(self._last_message, self._last_color) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\statusbar.py"", line 149, in status r.update_viewport() # Need this when window resized. File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 1157, in update_viewport self.set_viewport(*fb.viewport) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 1144, in set_viewport GL.glViewport(x, y, w, h) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glViewport, cArguments = (0, 0, 512, 16) ) OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glViewport, cArguments = (0, 0, 512, 16) ) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\statusbar.py"", line 84, in _expose_event self.status(self._last_message, self._last_color) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\statusbar.py"", line 149, in status r.update_viewport() # Need this when window resized. File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 1157, in update_viewport self.set_viewport(*fb.viewport) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 1144, in set_viewport GL.glViewport(x, y, w, h) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glViewport, cArguments = (0, 0, 512, 16) ) OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glViewport, cArguments = (0, 0, 512, 16) ) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\statusbar.py"", line 84, in _expose_event self.status(self._last_message, self._last_color) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\statusbar.py"", line 149, in status r.update_viewport() # Need this when window resized. File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 1157, in update_viewport self.set_viewport(*fb.viewport) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 1144, in set_viewport GL.glViewport(x, y, w, h) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glViewport, cArguments = (0, 0, 550, 16) ) OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glViewport, cArguments = (0, 0, 550, 16) ) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\statusbar.py"", line 84, in _expose_event self.status(self._last_message, self._last_color) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\statusbar.py"", line 149, in status r.update_viewport() # Need this when window resized. File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 1157, in update_viewport self.set_viewport(*fb.viewport) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 1144, in set_viewport GL.glViewport(x, y, w, h) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glViewport, cArguments = (0, 0, 550, 16) ) OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glViewport, cArguments = (0, 0, 550, 16) ) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\seq-view\seq_canvas.py"", line 232, in _actually_resize self._reformat() File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\seq-view\seq_canvas.py"", line 969, in _reformat self.sv.status(""Reformatting alignment; please wait..."", blank_after=0) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\gui.py"", line 2146, in status StatusLogger.status(self, *args, **kw) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\core\logger.py"", line 199, in status if l.status(msg, color, secondary) and getattr(l, ""excludes_other_logs"", True): File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\statusbar.py"", line 150, in status r.draw_background() File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 1168, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\seq-view\seq_canvas.py"", line 232, in _actually_resize self._reformat() File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\seq-view\seq_canvas.py"", line 969, in _reformat self.sv.status(""Reformatting alignment; please wait..."", blank_after=0) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\gui.py"", line 2146, in status StatusLogger.status(self, *args, **kw) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\core\logger.py"", line 199, in status if l.status(msg, color, secondary) and getattr(l, ""excludes_other_logs"", True): File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\statusbar.py"", line 150, in status r.draw_background() File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 1168, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\seq-view\region_browser.py"", line 1476, in _mouse_drag_cb self._drag_region = self.new_region(blocks=[block], select=True, File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\seq-view\region_browser.py"", line 967, in new_region self.seq_canvas.sv.status(""Use delete/backspace key to remove regions"") File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\gui.py"", line 2146, in status StatusLogger.status(self, *args, **kw) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\core\logger.py"", line 199, in status if l.status(msg, color, secondary) and getattr(l, ""excludes_other_logs"", True): File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\statusbar.py"", line 150, in status r.draw_background() File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 1168, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. select /B:206 10 atoms, 10 bonds, 1 residue, 1 model selected select /B:206 10 atoms, 10 bonds, 1 residue, 1 model selected Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\seq-view\region_browser.py"", line 1552, in _mouse_up_cb self._select_on_structures() File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\seq-view\region_browser.py"", line 1732, in _select_on_structures run(session, ""sel "" + concise_residue_spec(session, sel_residues)) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\core\commands\run.py"", line 38, in run results = command.run(text, log=log, return_json=return_json) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2897, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\std_commands\select.py"", line 51, in select report_selection(session) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\std_commands\select.py"", line 181, in report_selection session.logger.status(', '.join(lines) + ' selected', log = True) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\core\logger.py"", line 456, in status StatusLogger.status(self, msg, **kw) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\core\logger.py"", line 199, in status if l.status(msg, color, secondary) and getattr(l, ""excludes_other_logs"", True): File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\gui.py"", line 906, in status sbar.status(msg, color, secondary) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\statusbar.py"", line 150, in status r.draw_background() File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 1168, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. select /B:206 10 atoms, 10 bonds, 1 residue, 1 model selected select /B:206 10 atoms, 10 bonds, 1 residue, 1 model selected Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\seq-view\region_browser.py"", line 1552, in _mouse_up_cb self._select_on_structures() File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\seq-view\region_browser.py"", line 1732, in _select_on_structures run(session, ""sel "" + concise_residue_spec(session, sel_residues)) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\core\commands\run.py"", line 38, in run results = command.run(text, log=log, return_json=return_json) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2897, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\std_commands\select.py"", line 51, in select report_selection(session) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\std_commands\select.py"", line 181, in report_selection session.logger.status(', '.join(lines) + ' selected', log = True) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\core\logger.py"", line 456, in status StatusLogger.status(self, msg, **kw) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\core\logger.py"", line 199, in status if l.status(msg, color, secondary) and getattr(l, ""excludes_other_logs"", True): File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\gui.py"", line 906, in status sbar.status(msg, color, secondary) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\statusbar.py"", line 150, in status r.draw_background() File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 1168, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\statusbar.py"", line 84, in _expose_event self.status(self._last_message, self._last_color) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\statusbar.py"", line 149, in status r.update_viewport() # Need this when window resized. File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 1157, in update_viewport self.set_viewport(*fb.viewport) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 1144, in set_viewport GL.glViewport(x, y, w, h) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glViewport, cArguments = (0, 0, 554, 16) ) OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glViewport, cArguments = (0, 0, 554, 16) ) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\statusbar.py"", line 84, in _expose_event self.status(self._last_message, self._last_color) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\statusbar.py"", line 149, in status r.update_viewport() # Need this when window resized. File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 1157, in update_viewport self.set_viewport(*fb.viewport) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 1144, in set_viewport GL.glViewport(x, y, w, h) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glViewport, cArguments = (0, 0, 554, 16) ) OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glViewport, cArguments = (0, 0, 554, 16) ) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\statusbar.py"", line 84, in _expose_event self.status(self._last_message, self._last_color) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\statusbar.py"", line 149, in status r.update_viewport() # Need this when window resized. File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 1157, in update_viewport self.set_viewport(*fb.viewport) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 1144, in set_viewport GL.glViewport(x, y, w, h) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glViewport, cArguments = (0, 0, 592, 16) ) OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glViewport, cArguments = (0, 0, 592, 16) ) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\statusbar.py"", line 84, in _expose_event self.status(self._last_message, self._last_color) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\statusbar.py"", line 149, in status r.update_viewport() # Need this when window resized. File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 1157, in update_viewport self.set_viewport(*fb.viewport) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 1144, in set_viewport GL.glViewport(x, y, w, h) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glViewport, cArguments = (0, 0, 592, 16) ) OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glViewport, cArguments = (0, 0, 592, 16) ) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\statusbar.py"", line 84, in _expose_event self.status(self._last_message, self._last_color) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\statusbar.py"", line 149, in status r.update_viewport() # Need this when window resized. File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 1157, in update_viewport self.set_viewport(*fb.viewport) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 1144, in set_viewport GL.glViewport(x, y, w, h) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glViewport, cArguments = (0, 0, 631, 16) ) OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glViewport, cArguments = (0, 0, 631, 16) ) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\statusbar.py"", line 84, in _expose_event self.status(self._last_message, self._last_color) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\statusbar.py"", line 149, in status r.update_viewport() # Need this when window resized. File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 1157, in update_viewport self.set_viewport(*fb.viewport) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 1144, in set_viewport GL.glViewport(x, y, w, h) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glViewport, cArguments = (0, 0, 631, 16) ) OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glViewport, cArguments = (0, 0, 631, 16) ) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\seq-view\seq_canvas.py"", line 232, in _actually_resize self._reformat() File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\seq-view\seq_canvas.py"", line 969, in _reformat self.sv.status(""Reformatting alignment; please wait..."", blank_after=0) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\gui.py"", line 2146, in status StatusLogger.status(self, *args, **kw) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\core\logger.py"", line 199, in status if l.status(msg, color, secondary) and getattr(l, ""excludes_other_logs"", True): File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\statusbar.py"", line 150, in status r.draw_background() File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 1168, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\seq-view\seq_canvas.py"", line 232, in _actually_resize self._reformat() File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\seq-view\seq_canvas.py"", line 969, in _reformat self.sv.status(""Reformatting alignment; please wait..."", blank_after=0) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\gui.py"", line 2146, in status StatusLogger.status(self, *args, **kw) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\core\logger.py"", line 199, in status if l.status(msg, color, secondary) and getattr(l, ""excludes_other_logs"", True): File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\statusbar.py"", line 150, in status r.draw_background() File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 1168, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\statusbar.py"", line 84, in _expose_event self.status(self._last_message, self._last_color) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\statusbar.py"", line 149, in status r.update_viewport() # Need this when window resized. File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 1157, in update_viewport self.set_viewport(*fb.viewport) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 1144, in set_viewport GL.glViewport(x, y, w, h) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glViewport, cArguments = (0, 0, 646, 16) ) OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glViewport, cArguments = (0, 0, 646, 16) ) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\statusbar.py"", line 84, in _expose_event self.status(self._last_message, self._last_color) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\statusbar.py"", line 149, in status r.update_viewport() # Need this when window resized. File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 1157, in update_viewport self.set_viewport(*fb.viewport) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 1144, in set_viewport GL.glViewport(x, y, w, h) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glViewport, cArguments = (0, 0, 646, 16) ) OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glViewport, cArguments = (0, 0, 646, 16) ) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\statusbar.py"", line 84, in _expose_event self.status(self._last_message, self._last_color) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\statusbar.py"", line 149, in status r.update_viewport() # Need this when window resized. File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 1157, in update_viewport self.set_viewport(*fb.viewport) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 1144, in set_viewport GL.glViewport(x, y, w, h) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glViewport, cArguments = (0, 0, 671, 16) ) OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glViewport, cArguments = (0, 0, 671, 16) ) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\statusbar.py"", line 84, in _expose_event self.status(self._last_message, self._last_color) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\statusbar.py"", line 149, in status r.update_viewport() # Need this when window resized. File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 1157, in update_viewport self.set_viewport(*fb.viewport) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 1144, in set_viewport GL.glViewport(x, y, w, h) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glViewport, cArguments = (0, 0, 671, 16) ) OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glViewport, cArguments = (0, 0, 671, 16) ) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\seq-view\seq_canvas.py"", line 232, in _actually_resize self._reformat() File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\seq-view\seq_canvas.py"", line 969, in _reformat self.sv.status(""Reformatting alignment; please wait..."", blank_after=0) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\gui.py"", line 2146, in status StatusLogger.status(self, *args, **kw) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\core\logger.py"", line 199, in status if l.status(msg, color, secondary) and getattr(l, ""excludes_other_logs"", True): File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\statusbar.py"", line 150, in status r.draw_background() File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 1168, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\seq-view\seq_canvas.py"", line 232, in _actually_resize self._reformat() File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\seq-view\seq_canvas.py"", line 969, in _reformat self.sv.status(""Reformatting alignment; please wait..."", blank_after=0) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\gui.py"", line 2146, in status StatusLogger.status(self, *args, **kw) File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\core\logger.py"", line 199, in status if l.status(msg, color, secondary) and getattr(l, ""excludes_other_logs"", True): File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\ui\statusbar.py"", line 150, in status r.draw_background() File ""C:\Program Files\ChimeraX 1.4.dev202202182306\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 1168, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. OpenGL version: 3.3.0 - Build 26.20.100.7926 OpenGL renderer: Intel(R) UHD Graphics OpenGL vendor: Intel Locale: en_IL.cp1252 Qt version: PyQt5 5.15.2, Qt 5.15.2 Qt platform: windows Manufacturer: HP Model: HP Pavilion Laptop 14-ce3xxx OS: Microsoft Windows 10 Home (Build 19042) Memory: 8,361,132,032 MaxProcessMemory: 137,438,953,344 CPU: 8 Intel(R) Core(TM) i5-1035G1 CPU @ 1.00GHz OSLanguage: en-GB Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 Babel: 2.9.1 backcall: 0.2.0 blockdiag: 3.0.0 certifi: 2021.10.8 cftime: 1.5.2 charset-normalizer: 2.0.12 ChimeraX-AddCharge: 1.2.3 ChimeraX-AddH: 2.1.11 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.2.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.36.2 ChimeraX-AtomicLibrary: 6.0.1 ChimeraX-AtomSearch: 2.0 ChimeraX-AtomSearchLibrary: 1.0 ChimeraX-AxesPlanes: 2.1 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.0 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.6.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.2 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.2 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.1 ChimeraX-CommandLine: 1.2.1 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.4.dev202202182306 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1.5 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.1.2 ChimeraX-Help: 1.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0 ChimeraX-Label: 1.1 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 2.0.6 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.7 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.5.1 ChimeraX-ModelPanel: 1.3.2 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.2 ChimeraX-OpenCommand: 1.8 ChimeraX-PDB: 2.6.6 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.4.6 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.1 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.7.7 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.0.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.16.1 ChimeraX-uniprot: 2.2 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.1.1 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.4 comtypes: 1.1.10 cxservices: 1.1 cycler: 0.11.0 Cython: 0.29.26 debugpy: 1.5.1 decorator: 5.1.1 docutils: 0.17.1 entrypoints: 0.4 filelock: 3.4.2 fonttools: 4.29.1 funcparserlib: 1.0.0a0 grako: 3.16.5 h5py: 3.6.0 html2text: 2020.1.16 idna: 3.3 ihm: 0.26 imagecodecs: 2021.11.20 imagesize: 1.3.0 ipykernel: 6.6.1 ipython: 7.31.1 ipython-genutils: 0.2.0 jedi: 0.18.1 Jinja2: 3.0.3 jupyter-client: 7.1.0 jupyter-core: 4.9.2 kiwisolver: 1.3.2 line-profiler: 3.4.0 lxml: 4.7.1 lz4: 3.1.10 MarkupSafe: 2.1.0 matplotlib: 3.5.1 matplotlib-inline: 0.1.3 msgpack: 1.0.3 nest-asyncio: 1.5.4 netCDF4: 1.5.8 networkx: 2.6.3 numexpr: 2.8.1 numpy: 1.22.1 openvr: 1.16.802 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pickleshare: 0.7.5 Pillow: 9.0.0 pip: 21.3.1 pkginfo: 1.8.2 prompt-toolkit: 3.0.28 psutil: 5.9.0 pycollada: 0.7.2 pydicom: 2.2.2 Pygments: 2.11.2 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.7 PyQt5-commercial: 5.15.2 PyQt5-sip: 12.8.1 PyQtWebEngine-commercial: 5.15.2 python-dateutil: 2.8.2 pytz: 2021.3 pywin32: 303 pyzmq: 22.3.0 qtconsole: 5.2.2 QtPy: 2.0.1 RandomWords: 0.3.0 requests: 2.27.1 scipy: 1.7.3 setuptools: 59.8.0 sfftk-rw: 0.7.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 4.3.2 sphinx-autodoc-typehints: 1.15.2 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-community: 1.0.0 tables: 3.7.0 tifffile: 2021.11.2 tinyarray: 1.2.4 tornado: 6.1 traitlets: 5.1.1 urllib3: 1.26.8 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.37.1 wheel-filename: 1.3.0 WMI: 1.5.1" defect closed moderate Graphics nonchimerax all ChimeraX