id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 6234 Cannot save session including volumes bigger than 4 Gbytes linda.franken@… Tom Goddard "The following bug report has been submitted: Platform: Linux-3.10.0-1160.36.2.el7.x86_64-x86_64-with-glibc2.17 ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC) Description I'm trying to save a session. The maps are really big, so it is giving a size error, but it is not my disc space that is limiting here... It would be nice if there isn't a size limit for saving sessions. Best wishes, Linda Franken Log: UCSF ChimeraX version: 1.3 (2021-12-08) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX open /beegfs/cssb/user/frankenl/ongoing/Kay_Gruenewald/SPA/ts1_vs_wt- GFP/ts1_corrected_pixel/PostProcess/job084/postprocess.mrc Opened postprocess.mrc as #1, grid size 350,350,350, pixel 2.66, shown at level 0.0438, step 2, values float32 No atomic structure models chosen rename #1 ts1 volume #1 step 1 volume #1 level 0.01675 rename #1 ts1_equalparticles open /beegfs/cssb/user/frankenl/ongoing/Kay_Gruenewald/SPA/ts1_vs_wt- GFP/Wildtype/PostProcess/exact_9000_high-quality/postprocess.mrc Opened postprocess.mrc as #2, grid size 350,350,350, pixel 2.66, shown at level 0.0436, step 2, values float32 rename #2 wt_equalparticles volume #2 step 1 volume #2 level 0.0167 set bgColor white select #1 2 models selected undo select #1 2 models selected color #1.1 cyan select #2 2 models selected ui tool show ""Color Actions"" color sel purple color sel medium purple color sel medium orchid [Repeated 1 time(s)] color sel slate blue color sel thistle color sel plum select clear ui tool show ""Fit in Map"" Fit map ts1_equalparticles in map wt_equalparticles using 4347958 points correlation = 0.9861, correlation about mean = 0.8794, overlap = 4125 steps = 24, shift = 0.00996, angle = 0.00027 degrees Position of ts1_equalparticles (#1) relative to wt_equalparticles (#2) coordinates: Matrix rotation and translation 1.00000000 -0.00000006 0.00000005 -0.00050676 0.00000006 1.00000000 -0.00000471 -0.00777279 -0.00000005 0.00000471 1.00000000 -0.00169359 Axis 0.99984493 0.01125688 0.01354272 Axis point 0.00000000 357.82014136 -1648.91782432 Rotation angle (degrees) 0.00026989 Shift along axis -0.00061711 select #1 2 models selected ui tool show ""Color Actions"" color sel dark turquoise color sel turquoise select clear lighting flat [Repeated 1 time(s)] lighting shadows true intensity 0.5 graphics silhouettes false graphics silhouettes true lighting full graphics silhouettes false graphics silhouettes true graphics silhouettes false graphics silhouettes true graphics silhouettes false graphics silhouettes true graphics silhouettes false volume #1 level 0.02 volume #2 level 0.02 open /beegfs/cssb/user/frankenl/ongoing/Kay_Gruenewald/SPA/chimera_sessions/ts1_vs_wt_vs_empty/emd_7034.map Opened emd_7034.map as #3, grid size 1280,1280,1280, pixel 0.85, shown at step 1, values float32 volume #3 region 0,0,0,1279,1279,1279 step 8 [Repeated 1 time(s)] volume #3 step 1 QXcbConnection: XCB error: 8 (BadMatch), sequence: 8667, resource id: 35651594, major code: 42 (SetInputFocus), minor code: 0 select #3 3 models selected ui mousemode right ""translate selected models"" view matrix models #3,1,0,0,501.26,0,1,0,40.554,0,0,1,-37.342 view matrix models #3,1,0,0,586.61,0,1,0,442.84,0,0,1,479.8 view matrix models #3,1,0,0,619.15,0,1,0,619.86,0,0,1,755.53 view matrix models #3,1,0,0,718.43,0,1,0,424.73,0,0,1,492.18 view matrix models #3,1,0,0,468.07,0,1,0,399.97,0,0,1,369.25 view matrix models #3,1,0,0,531.59,0,1,0,414.24,0,0,1,394.26 view matrix models #3,1,0,0,297.69,0,1,0,576.8,0,0,1,553.15 view matrix models #3,1,0,0,380.18,0,1,0,505.72,0,0,1,499.9 view matrix models #3,1,0,0,460.34,0,1,0,432.62,0,0,1,448.97 ui mousemode right ""rotate selected models"" view matrix models #3,0.38675,-0.8164,0.42886,460.32,0.92129,0.32154,-0.21873,432.66,0.04068,0.4797,0.87649,448.97 view matrix models #3,-0.26739,-0.69237,0.67017,460.29,0.90948,-0.41112,-0.061862,432.66,0.31835,0.59297,0.73962,448.98 ui mousemode right ""translate selected models"" view matrix models #3,-0.26739,-0.69237,0.67017,494.55,0.90948,-0.41112,-0.061862,457.92,0.31835,0.59297,0.73962,467.48 view matrix models #3,-0.26739,-0.69237,0.67017,470,0.90948,-0.41112,-0.061862,440.18,0.31835,0.59297,0.73962,450.97 ui mousemode right ""rotate selected models"" view matrix models #3,0.38853,-0.91901,-0.066805,470.04,0.28954,0.052938,0.9557,440.13,-0.87476,-0.39066,0.28666,450.96 Fit map emd_7034.map in map wt_equalparticles using 20889339 points correlation = 0.9292, correlation about mean = 0.08682, overlap = 3.822e+06 steps = 180, shift = 30.4, angle = 9.19 degrees Position of emd_7034.map (#3) relative to wt_equalparticles (#2) coordinates: Matrix rotation and translation 0.49998811 -0.86603227 -0.00008725 466.22115516 0.30900145 0.17830230 0.93419830 466.19252177 -0.80903030 -0.46711498 0.35675425 466.19205222 Axis -0.70076421 0.40453363 0.58760706 Axis point 0.00000000 648.22717595 129.94766006 Rotation angle (degrees) 88.99599295 Shift along axis 135.81719359 volume #3 change image level -0.5654,0 level 5.047,0.8 level 13.36,1 volume #3 level 2.146 select clear open /beegfs/cssb/user/frankenl/ongoing/Kay_Gruenewald/SPA/adeno_all_data_merged/PostProcess/CTF4-5_calibratedpixel_autobfactor/postprocess.mrc Opened postprocess.mrc as #4, grid size 1280,1280,1280, pixel 1.05, shown at step 1, values float32 volume #4 region 0,0,0,1279,1279,1279 step 8 [Repeated 1 time(s)] volume #4 step 1 select #4 3 models selected rename #4 ts1_highres ui tool show ""Color Actions"" color sel dark turquoise rename #3 No name or id option specified for renaming color sel medium slate blue color sel dark turquoise select #3 3 models selected color sel medium purple [Repeated 1 time(s)] color #4 turquoise models transparency 0 color #3 #b2b2ff models transparency 0 hide #!1 models select #4 3 models selected ui mousemode right ""translate selected models"" view matrix models #4,1,0,0,-307.4,0,1,0,-216.47,0,0,1,-259.42 view matrix models #4,1,0,0,-254.94,0,1,0,-180.4,0,0,1,-207.2 view matrix models #4,1,0,0,-244.71,0,1,0,-172.22,0,0,1,-207.48 view matrix models #4,1,0,0,-235.6,0,1,0,-165.62,0,0,1,-201.54 Fit map ts1_highres in map wt_equalparticles using 20480345 points correlation = 0.9477, correlation about mean = 0.3258, overlap = 9664 steps = 128, shift = 49.9, angle = 0.00174 degrees Position of ts1_highres (#4) relative to wt_equalparticles (#2) coordinates: Matrix rotation and translation 1.00000000 -0.00000786 -0.00002089 -204.49115959 0.00000786 1.00000000 0.00002063 -204.54831261 0.00002089 -0.00002063 1.00000000 -204.52055094 Axis -0.67877313 -0.68729549 0.25863478 Axis point 12594222.77171497 -0.00000000 -2429688.62936232 Rotation angle (degrees) 0.00174152 Shift along axis 226.49210857 Fit map ts1_highres in map emd_7034.map using 20480345 points correlation = 0.7329, correlation about mean = 0.3832, overlap = 7.975e+05 steps = 40, shift = 0.00712, angle = 0.00306 degrees Position of ts1_highres (#4) relative to emd_7034.map (#3) coordinates: Matrix rotation and translation 0.50001866 0.30900834 -0.80900875 -0.02150887 -0.86601462 0.17834599 -0.46713101 774.55398247 -0.00006390 0.93418761 0.35678207 -865.82885073 Axis 0.70076754 -0.40453490 -0.58760223 Axis point 0.00000000 932.61493878 186.92586541 Rotation angle (degrees) 88.99306898 Shift along axis 195.41377309 select clear lighting full lighting soft [Repeated 1 time(s)] lighting full lighting simple [Repeated 1 time(s)] lighting full lighting shadows false lighting shadows true graphics silhouettes true graphics silhouettes false ui tool show ""Side View"" save /beegfs/cssb/user/frankenl/ongoing/Kay_Gruenewald/SPA/chimera_sessions/chimerax_figures/wt_vs_ts1_maps.cxs QXcbConnection: XCB error: 8 (BadMatch), sequence: 48073, resource id: 35651597, major code: 42 (SetInputFocus), minor code: 0 ui mousemode right zoom close #1 close #2 transparency 50 transparency 0 select #4 5 models selected transparency sel 50 select clear volume #3 level 1.5 volume #4 level 0.009 volume #4 change image level 0.0005444,0 level 0.01237,0.8 level 0.02391,1 save /beegfs/cssb/user/frankenl/ongoing/Kay_Gruenewald/SPA/chimera_sessions/chimerax_figures/wt_vs_ts1_maps.cxs includeMaps true Traceback (most recent call last): File ""/beegfs/cssb/software/em/chimerax/1.3/libexec/UCSF- ChimeraX/lib/python3.9/site-packages/chimerax/core/session.py"", line 890, in save session.save(output, version=version, include_maps=include_maps) File ""/beegfs/cssb/software/em/chimerax/1.3/libexec/UCSF- ChimeraX/lib/python3.9/site-packages/chimerax/core/session.py"", line 624, in save fserialize(stream, data) File ""/beegfs/cssb/software/em/chimerax/1.3/libexec/UCSF- ChimeraX/lib/python3.9/site-packages/chimerax/core/serialize.py"", line 65, in msgpack_serialize stream.write(packer.pack(obj)) File ""msgpack/_packer.pyx"", line 292, in msgpack._cmsgpack.Packer.pack File ""msgpack/_packer.pyx"", line 298, in msgpack._cmsgpack.Packer.pack File ""msgpack/_packer.pyx"", line 295, in msgpack._cmsgpack.Packer.pack File ""msgpack/_packer.pyx"", line 231, in msgpack._cmsgpack.Packer._pack File ""msgpack/_packer.pyx"", line 202, in msgpack._cmsgpack.Packer._pack ValueError: bytes object is too large ValueError: bytes object is too large File ""msgpack/_packer.pyx"", line 202, in msgpack._cmsgpack.Packer._pack See log for complete Python traceback. Traceback (most recent call last): File ""/beegfs/cssb/software/em/chimerax/1.3/libexec/UCSF- ChimeraX/lib/python3.9/site-packages/chimerax/save_command/dialog.py"", line 116, in lambda *args, ses=session: show_save_file_dialog(ses), tool_tip=""Save output file"", File ""/beegfs/cssb/software/em/chimerax/1.3/libexec/UCSF- ChimeraX/lib/python3.9/site-packages/chimerax/save_command/dialog.py"", line 127, in show_save_file_dialog _dlg.display(session, **kw) File ""/beegfs/cssb/software/em/chimerax/1.3/libexec/UCSF- ChimeraX/lib/python3.9/site-packages/chimerax/save_command/dialog.py"", line 51, in display run(session, cmd) File ""/beegfs/cssb/software/em/chimerax/1.3/libexec/UCSF- ChimeraX/lib/python3.9/site-packages/chimerax/core/commands/run.py"", line 36, in run results = command.run(text, log=log, return_json=return_json) File ""/beegfs/cssb/software/em/chimerax/1.3/libexec/UCSF- ChimeraX/lib/python3.9/site-packages/chimerax/core/commands/cli.py"", line 2856, in run result = ci.function(session, **kw_args) File ""/beegfs/cssb/software/em/chimerax/1.3/libexec/UCSF- ChimeraX/lib/python3.9/site-packages/chimerax/save_command/cmd.py"", line 75, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File ""/beegfs/cssb/software/em/chimerax/1.3/libexec/UCSF- ChimeraX/lib/python3.9/site-packages/chimerax/core/commands/cli.py"", line 2856, in run result = ci.function(session, **kw_args) File ""/beegfs/cssb/software/em/chimerax/1.3/libexec/UCSF- ChimeraX/lib/python3.9/site-packages/chimerax/save_command/cmd.py"", line 89, in provider_save saver_info.save(session, path, **provider_kw) File ""/beegfs/cssb/software/em/chimerax/1.3/libexec/UCSF- ChimeraX/lib/python3.9/site-packages/chimerax/core_formats/__init__.py"", line 84, in save return cxs_save(session, path, **kw) File ""/beegfs/cssb/software/em/chimerax/1.3/libexec/UCSF- ChimeraX/lib/python3.9/site-packages/chimerax/core/session.py"", line 890, in save session.save(output, version=version, include_maps=include_maps) File ""/beegfs/cssb/software/em/chimerax/1.3/libexec/UCSF- ChimeraX/lib/python3.9/site-packages/chimerax/core/session.py"", line 624, in save fserialize(stream, data) File ""/beegfs/cssb/software/em/chimerax/1.3/libexec/UCSF- ChimeraX/lib/python3.9/site-packages/chimerax/core/serialize.py"", line 65, in msgpack_serialize stream.write(packer.pack(obj)) File ""msgpack/_packer.pyx"", line 292, in msgpack._cmsgpack.Packer.pack File ""msgpack/_packer.pyx"", line 298, in msgpack._cmsgpack.Packer.pack File ""msgpack/_packer.pyx"", line 295, in msgpack._cmsgpack.Packer.pack File ""msgpack/_packer.pyx"", line 231, in msgpack._cmsgpack.Packer._pack File ""msgpack/_packer.pyx"", line 202, in msgpack._cmsgpack.Packer._pack ValueError: bytes object is too large ValueError: bytes object is too large File ""msgpack/_packer.pyx"", line 202, in msgpack._cmsgpack.Packer._pack See log for complete Python traceback. save /beegfs/cssb/user/frankenl/ongoing/Kay_Gruenewald/SPA/chimera_sessions/chimerax_figures/wt_vs_ts1_maps.cxs volume #4 level 0.01 ui tool show ""Side View"" ui mousemode right zoom volume gaussian #3 bfactor 50 Opened emd_7034.map gaussian as #1, grid size 1280,1280,1280, pixel 0.85, shown at step 1, values float32 volume #1 level 1.5 volume #1 level 1 volume gaussian #3 bfactor 100 Opened emd_7034.map gaussian as #2, grid size 1280,1280,1280, pixel 0.85, shown at step 1, values float32 volume #2 level 1.5 volume #2 level 1 close #1 close #2 volume gaussian #3 bfactor 100 Opened emd_7034.map gaussian as #1, grid size 1280,1280,1280, pixel 0.85, shown at step 1, values float32 volume #1 level 1.4 volume #1 color #b2b2ff volume #4 level 0.012 volume #4 level 0.011 save /beegfs/cssb/user/frankenl/ongoing/Kay_Gruenewald/SPA/chimera_sessions/chimerax_figures/wt_vs_ts1_maps.cxs Traceback (most recent call last): File ""/beegfs/cssb/software/em/chimerax/1.3/libexec/UCSF- ChimeraX/lib/python3.9/site-packages/chimerax/core/session.py"", line 890, in save session.save(output, version=version, include_maps=include_maps) File ""/beegfs/cssb/software/em/chimerax/1.3/libexec/UCSF- ChimeraX/lib/python3.9/site-packages/chimerax/core/session.py"", line 624, in save fserialize(stream, data) File ""/beegfs/cssb/software/em/chimerax/1.3/libexec/UCSF- ChimeraX/lib/python3.9/site-packages/chimerax/core/serialize.py"", line 65, in msgpack_serialize stream.write(packer.pack(obj)) File ""msgpack/_packer.pyx"", line 292, in msgpack._cmsgpack.Packer.pack File ""msgpack/_packer.pyx"", line 298, in msgpack._cmsgpack.Packer.pack File ""msgpack/_packer.pyx"", line 295, in msgpack._cmsgpack.Packer.pack File ""msgpack/_packer.pyx"", line 231, in msgpack._cmsgpack.Packer._pack File ""msgpack/_packer.pyx"", line 202, in msgpack._cmsgpack.Packer._pack ValueError: bytes object is too large ValueError: bytes object is too large File ""msgpack/_packer.pyx"", line 202, in msgpack._cmsgpack.Packer._pack See log for complete Python traceback. Traceback (most recent call last): File ""/beegfs/cssb/software/em/chimerax/1.3/libexec/UCSF- ChimeraX/lib/python3.9/site-packages/chimerax/save_command/dialog.py"", line 116, in lambda *args, ses=session: show_save_file_dialog(ses), tool_tip=""Save output file"", File ""/beegfs/cssb/software/em/chimerax/1.3/libexec/UCSF- ChimeraX/lib/python3.9/site-packages/chimerax/save_command/dialog.py"", line 127, in show_save_file_dialog _dlg.display(session, **kw) File ""/beegfs/cssb/software/em/chimerax/1.3/libexec/UCSF- ChimeraX/lib/python3.9/site-packages/chimerax/save_command/dialog.py"", line 51, in display run(session, cmd) File ""/beegfs/cssb/software/em/chimerax/1.3/libexec/UCSF- ChimeraX/lib/python3.9/site-packages/chimerax/core/commands/run.py"", line 36, in run results = command.run(text, log=log, return_json=return_json) File ""/beegfs/cssb/software/em/chimerax/1.3/libexec/UCSF- ChimeraX/lib/python3.9/site-packages/chimerax/core/commands/cli.py"", line 2856, in run result = ci.function(session, **kw_args) File ""/beegfs/cssb/software/em/chimerax/1.3/libexec/UCSF- ChimeraX/lib/python3.9/site-packages/chimerax/save_command/cmd.py"", line 75, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File ""/beegfs/cssb/software/em/chimerax/1.3/libexec/UCSF- ChimeraX/lib/python3.9/site-packages/chimerax/core/commands/cli.py"", line 2856, in run result = ci.function(session, **kw_args) File ""/beegfs/cssb/software/em/chimerax/1.3/libexec/UCSF- ChimeraX/lib/python3.9/site-packages/chimerax/save_command/cmd.py"", line 89, in provider_save saver_info.save(session, path, **provider_kw) File ""/beegfs/cssb/software/em/chimerax/1.3/libexec/UCSF- ChimeraX/lib/python3.9/site-packages/chimerax/core_formats/__init__.py"", line 84, in save return cxs_save(session, path, **kw) File ""/beegfs/cssb/software/em/chimerax/1.3/libexec/UCSF- ChimeraX/lib/python3.9/site-packages/chimerax/core/session.py"", line 890, in save session.save(output, version=version, include_maps=include_maps) File ""/beegfs/cssb/software/em/chimerax/1.3/libexec/UCSF- ChimeraX/lib/python3.9/site-packages/chimerax/core/session.py"", line 624, in save fserialize(stream, data) File ""/beegfs/cssb/software/em/chimerax/1.3/libexec/UCSF- ChimeraX/lib/python3.9/site-packages/chimerax/core/serialize.py"", line 65, in msgpack_serialize stream.write(packer.pack(obj)) File ""msgpack/_packer.pyx"", line 292, in msgpack._cmsgpack.Packer.pack File ""msgpack/_packer.pyx"", line 298, in msgpack._cmsgpack.Packer.pack File ""msgpack/_packer.pyx"", line 295, in msgpack._cmsgpack.Packer.pack File ""msgpack/_packer.pyx"", line 231, in msgpack._cmsgpack.Packer._pack File ""msgpack/_packer.pyx"", line 202, in msgpack._cmsgpack.Packer._pack ValueError: bytes object is too large ValueError: bytes object is too large File ""msgpack/_packer.pyx"", line 202, in msgpack._cmsgpack.Packer._pack See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 510.39.01 OpenGL renderer: NVIDIA GeForce GTX 1080 Ti/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Manufacturer: Supermicro Model: SYS-1029GQ-TRT OS: CentOS Linux 7 Core Architecture: 64bit ELF Virutal Machine: none CPU: 40 Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz Cache Size: 14080 KB Memory: total used free shared buff/cache available Mem: 376G 164G 2.6G 230M 208G 210G Swap: 4.0G 1.2G 2.8G Graphics: 03:00.0 VGA compatible controller [0300]: ASPEED Technology, Inc. ASPEED Graphics Family [1a03:2000] (rev 41) Subsystem: ASPEED Technology, Inc. ASPEED Graphics Family [1a03:2000] Kernel driver in use: ast Locale: ('en_US', 'UTF-8') PyQt5 5.15.2, Qt 5.15.2 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 Babel: 2.9.1 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2021.10.8 cftime: 1.5.1.1 charset-normalizer: 2.0.9 ChimeraX-AddCharge: 1.2.2 ChimeraX-AddH: 2.1.11 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.2.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.31 ChimeraX-AtomicLibrary: 4.2 ChimeraX-AtomSearch: 2.0 ChimeraX-AtomSearchLibrary: 1.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.0 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.6.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.2 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.2 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5 ChimeraX-CommandLine: 1.1.5 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.3 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1.5 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.1.2 ChimeraX-Help: 1.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0 ChimeraX-Label: 1.1 ChimeraX-LinuxSupport: 1.0 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.4 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 2.0.4 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.4 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.2.6 ChimeraX-ModelPanel: 1.2.1 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.2 ChimeraX-OpenCommand: 1.7 ChimeraX-PDB: 2.6.5 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.4.6 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.1 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.6.1 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1 ChimeraX-ToolshedUtils: 1.2 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.13.7 ChimeraX-uniprot: 2.2 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.0.1 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.4 cxservices: 1.1 cycler: 0.11.0 Cython: 0.29.24 decorator: 5.1.0 distro: 1.6.0 docutils: 0.17.1 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 3.6.0 html2text: 2020.1.16 idna: 3.3 ihm: 0.21 imagecodecs: 2021.4.28 imagesize: 1.3.0 ipykernel: 5.5.5 ipython: 7.23.1 ipython-genutils: 0.2.0 jedi: 0.18.0 Jinja2: 3.0.1 jupyter-client: 6.1.12 jupyter-core: 4.9.1 kiwisolver: 1.3.2 line-profiler: 3.3.0 lxml: 4.6.3 lz4: 3.1.3 MarkupSafe: 2.0.1 matplotlib: 3.4.3 matplotlib-inline: 0.1.3 msgpack: 1.0.2 netCDF4: 1.5.7 networkx: 2.6.3 numexpr: 2.8.0 numpy: 1.21.2 openvr: 1.16.801 packaging: 21.3 ParmEd: 3.2.0 parso: 0.8.3 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 8.3.2 pip: 21.2.4 pkginfo: 1.7.1 prompt-toolkit: 3.0.23 psutil: 5.8.0 ptyprocess: 0.7.0 pycollada: 0.7.1 pydicom: 2.1.2 Pygments: 2.10.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.6 PyQt5-commercial: 5.15.2 PyQt5-sip: 12.8.1 PyQtWebEngine-commercial: 5.15.2 python-dateutil: 2.8.2 pytz: 2021.3 pyzmq: 22.3.0 qtconsole: 5.1.1 QtPy: 1.11.3 RandomWords: 0.3.0 requests: 2.26.0 scipy: 1.7.1 setuptools: 57.5.0 sfftk-rw: 0.7.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 4.2.0 sphinx-autodoc-typehints: 1.12.0 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-jurko: 0.6 tables: 3.6.1 tifffile: 2021.4.8 tinyarray: 1.2.3 tornado: 6.1 traitlets: 5.1.1 urllib3: 1.26.7 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.37.0 wheel-filename: 1.3.0" defect assigned moderate Sessions Greg Couch all ChimeraX