id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 6218 Crash using File→Open on Windows and/or in return statement chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: Windows-10-10.0.18363 ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010eThread 0x0000277c (most recent call first): File ""C:\Program Files\Chime Windows fatal exception: code 0x8001010e rWindows fatal exception: code 0x8001010e Windows fatal exception: Windows fatal exception: code 0x8001010eaX 1.3\code 0xb8001010ei n \lWindows fatal exception: icode 0xbWindows fatal exception: code 0x8001010e8001010e \Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010es i tWindows fatal exception: eWindows fatal exception: -code 0xp8001010ea ccode 0xWindows fatal exception: 8001010ecode 0xk8001010ea ge s\Windows fatal exception: ccode 0xWindows fatal exception: 8001010ehcode 0xi 8001010e Windows fatal exception: mcode 0xe8001010er ax\core\Windows fatal exception: code 0xc8001010eo mmanWindows fatal exception: dcode 0xs8001010e\ cliWindows fatal exception: .code 0xp8001010ey "", line 1122Windows fatal exception: in _code 0x8001010eWindows fatal exception: code 0xWindows fatal exception: 8001010eb code 0x8001010er oWindows fatal exception: wcode 0xs8001010ee _parWindows fatal exception: scode 0xe8001010e File ""CWindows fatal exception: :code 0x\8001010eP rogram Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 1194 in paWindows fatal exception: code 0xr8001010es e File Windows fatal exception: ""code 0xC8001010e: \PrWindows fatal exception: ocode 0xg8001010er am Windows fatal exception: Fcode 0xi8001010ele s\ChWindows fatal exception: icode 0xm8001010ee raXWindows fatal exception: code 0x18001010e. 3\biWindows fatal exception: ncode 0x\8001010el ib\siWindows fatal exception: tcode 0xe8001010e- packages\chimerax\core\commands\cli.py"", line 2447 in _parse_arg File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packageWindows fatal exception: scode 0x\8001010ec himerax\core\commands\cli.py"", line 2588 in _process_positional_arguments File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2812 in run File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\run.py"", line 36 in run File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\seq-view\tool.py"", line 528 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 2515 in _show_context_menu File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 2383 in show_context_menu File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 2264 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 301 in event_loop File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 867 in init File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\Windows fatal exception: code 0xChi8001010e meraWindows fatal exception: Xcode 0x_8001010em ainWindows fatal exception: .code 0xp8001010ey "", line 1018Windows fatal exception: in code 0x Windows fatal exception: File code 0x""8001010eC :\Windows fatal exception: Pcode 0xr8001010eo gram Files\ChimeraX 1.3\bin\lib\runpy.py"", line 87 in _run_code File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x0000277c (most recent call first): File ""C:\Program FileWindows fatal exception: scode 0x\8001010eC himeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 1122 in _browse_parse File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 1194 in parse File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2447 in _parse_arg File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2588 in _process_positional_arguments File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2812 in run File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\run.py"", line 36 in run File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\seq-view\tool.py"", line 528 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 2515 in _show_context_menu File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 2383 in show_context_menu File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 2264 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 301 in event_loop File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 867 in init File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 1018 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 87 in _run_code File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x0000277c (most recent call first): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 1122 in _browse_parse File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 1194 in parse File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2447 in _parse_arg File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2588 in _process_positional_arguments File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2812 in run File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\run.py"", line 36 in run File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\seq-view\tool.py"", line 528 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 2515 in _show_context_menu File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 2383 in show_context_menu File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 2264 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 301 in event_loop File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 867 in init File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 1018 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 87 in _run_code File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x0000277c (most recent call first): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 1122 in _browse_parse File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 1194 in parse File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2447 in _parse_arg File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2588 in _process_positional_arguments File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2812 in run File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\run.py"", line 36 in run File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\seq-view\tool.py"", line 528 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 2515 in _show_context_menu File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 2383 in show_context_menu File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 2264 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 301 in event_loop File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 867 in init File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 1018 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 87 in _run_code File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x0000277c (most recent call first): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 1122 in _browse_parse File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 1194 in parse File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2447 in _parse_arg File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2588 in _process_positional_arguments File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2812 in run File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\run.py"", line 36 in run File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\seq-view\tool.py"", line 528 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 2515 in _show_context_menu File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 2383 in show_context_menu File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 2264 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 301 in event_loop File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 867 in init File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 1018 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 87 in _run_code File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x0000277c (most recent call first): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 1122 in _browse_parse File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 1194 in parse File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2447 in _parse_arg File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2588 in _process_positional_arguments File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2812 in run File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\run.py"", line 36 in run File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\seq-view\tool.py"", line 528 in File ""C:\Program Files\ChiWindows fatal exception: code 0xm8001010ee raX Windows fatal exception: 1code 0x.8001010e3 \biWindows fatal exception: ncode 0x\8001010el ib\Windows fatal exception: scode 0xi8001010et e-pWindows fatal exception: accode 0x8001010e Windows fatal exception: code 0xWindows fatal exception: kcode 0x8001010e8001010ea Windows fatal exception: gcode 0xWindows fatal exception: 8001010ee code 0x8001010es \Windows fatal exception: code 0xc8001010ehWindows fatal exception: icode 0xm8001010e erWindows fatal exception: acode 0xx8001010e\ ui\Windows fatal exception: code 0x8001010e guWindows fatal exception: icode 0x.8001010ep y"", line 2515 in _show_context_menu File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 2383 in show_context_menWindows fatal exception: ucode 0x 8001010e File Windows fatal exception: code 0x 8001010e"" C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 2264 in File ""C:\ProgrWindows fatal exception: Windows fatal exception: code 0xa8001010ecode 0x m 8001010eWindows fatal exception: Fcode 0xi8001010el es\Windows fatal exception: Ccode 0xh8001010ei m eWindows fatal exception: rcode 0xWindows fatal exception: 8001010ea code 0xXWindows fatal exception: code 0x8001010e8001010e 1Windows fatal exception: Windows fatal exception: code 0x.8001010e3 \bcode 0xi8001010enWindows fatal exception: \ lcode 0xi8001010eWindows fatal exception: code 0xb8001010e\ sWindows fatal exception: Windows fatal exception: icode 0xcode 0x8001010et 8001010e eWindows fatal exception: -code 0xp8001010ea ckages\chimerax\ui\gui.py"", line 301 in event_loop File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 867 in init Windows fatal exception: File code 0x""8001010eC :\Program Files\ChimeraX 1.3\bin\lib\siWindows fatal exception: tcode 0xe8001010e- packages\ChimeraX_main.py"", line 1018 in File ""C:\Program Files\ChimeraXWindows fatal exception: code 0x18001010e. 3\biWindows fatal exception: ncode 0x\8001010el ib\Windows fatal exception: rcode 0xu8001010en py.Windows fatal exception: pycode 0xWindows fatal exception: ""code 0x8001010e8001010e , line Windows fatal exception: 87code 0xWindows fatal exception: code 0x in 8001010e _r8001010eWindows fatal exception: code 0x8001010euWindows fatal exception: ncode 0x 8001010e_ cWindows fatal exception: ocode 0xdWindows fatal exception: ecode 0x8001010e File 8001010e"" C:\PWindows fatal exception: rcode 0x8001010eo gramWindows fatal exception: code 0xF8001010ei lesWindows fatal exception: \code 0xC8001010eh imeraX 1.3\bin\Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: lcode 0xi8001010eb \ruWindows fatal exception: ncode 0xp8001010ey .pyWindows fatal exception: ""code 0x, line 8001010e197 in _Windows fatal exception: rcode 0xu8001010en _module_as_main Windows fatal exception: code 0x8001010e Thread 0x0000277c (most recent call first): File ""C:\Program Files\ChimeraX Windows fatal exception: 1code 0x.8001010e3 \bin\lWindows fatal exception: icode 0xb8001010e\ sitWindows fatal exception: ecode 0x-8001010ep ackWindows fatal exception: code 0xWindows fatal exception: 8001010ea gecode 0xs8001010e\ cWindows fatal exception: hcode 0xWindows fatal exception: 8001010ei mcode 0xeWindows fatal exception: r8001010eacode 0xx \8001010e Windows fatal exception: code 0xc8001010eoWindows fatal exception: Windows fatal exception: code 0xr8001010ee \code 0xcWindows fatal exception: ocode 0xm8001010em a8001010en dWindows fatal exception: code 0xs8001010e\Windows fatal exception: ccode 0xl8001010ei .p yWindows fatal exception: Windows fatal exception: code 0xcode 0x8001010e"" 8001010e , line Windows fatal exception: Windows fatal exception: code 0x11228001010e in code 0x8001010e_ brWindows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010eo ws eWindows fatal exception: _code 0xp8001010ea rse Windows fatal exception: File code 0x""8001010eC :\PWindows fatal exception: rcode 0xo8001010eg raWindows fatal exception: mcode 0x8001010e Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 1194 in parse File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2447 in _parse_arg File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2588 in _process_positional_arguments File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2812 in run File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\run.py"", line 36 in run File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packaWindows fatal exception: code 0xg8001010ee s\chimerax\seq-view\Windows fatal exception: code 0xt8001010eo ol.py"", line 528 in File ""C:\Program Files\ChimeraWindows fatal exception: Xcode 0x 8001010e1 .3\biWindows fatal exception: ncode 0x\8001010el ib\Windows fatal exception: scode 0xi8001010et e-pWindows fatal exception: acode 0xc8001010ek ageWindows fatal exception: scode 0x\8001010ec himWindows fatal exception: ecode 0xr8001010ea x\uWindows fatal exception: icode 0x\8001010eg ui.py"", line 2515 in _show_context_menu File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 2383 in show_context_menu File ""C:\Program Files\ChimWindows fatal exception: ecode 0xr8001010ea X 1.3\binWindows fatal exception: \code 0xl8001010ei b\sWindows fatal exception: icode 0xt8001010ee -paWindows fatal exception: ccode 0xk8001010eag es\cWindows fatal exception: hcode 0xi8001010em eraWindows fatal exception: xcode 0x\8001010eu i\gWindows fatal exception: ui.pcode 0xy8001010e"" , line 2264 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 301 in event_loop File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 867Windows fatal exception: code 0x in 8001010ei nit File ""C:Windows fatal exception: \code 0xP8001010er ogrWindows fatal exception: acode 0xm8001010e FilesWindows fatal exception: \code 0xC8001010eh imWindows fatal exception: ecode 0xr8001010ea X Windows fatal exception: 1code 0x.8001010e3 \bWindows fatal exception: icode 0xn8001010e\ liWindows fatal exception: bcode 0x\8001010es ite-packages\ChimeraX_main.py"", line 1018 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 87 in _run_code File ""C:\Program Files\ChimerWindows fatal exception: code 0x8001010e aX 1.3\bin\lib\runpy.py"", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x0000277c (most recent call first): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 1122 in _browse_parse File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 1194 in parse File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2447 in _parse_arg File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2588 in _process_positional_arguments File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2812 in run File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\run.py"", line 36 in run File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\seq-view\tool.py"", line 528 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 2515 in _show_context_menu File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 2383 in show_context_menu File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 2264 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 301 in event_loop File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 867 in init File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 1018 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 87 in _run_code File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x0000277c (most recent call first): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 1122 in _browse_parse File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 1194 in parse File ""C:\Program Files\ChiWindows fatal exception: code 0xm8001010ee raX 1.3Windows fatal exception: \code 0xb8001010e in\liWindows fatal exception: code 0xb8001010e\ site-pWindows fatal exception: acode 0xc8001010ek ages\Windows fatal exception: ccode 0xh8001010ei meraxWindows fatal exception: \code 0xc8001010eo re\coWindows fatal exception: mcode 0xm8001010ea nds\cli.py"", line 2447 in _parse_arg File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2588 in _process_positional_arguments File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2812 in run File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\run.py"", line 36 in run File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\seq-view\tool.py"", line 528 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 2515 in _show_context_menu File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 2383 in show_context_menu File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 2264 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 301 in event_loop File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 867 in init File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 1018 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 87 in _run_code File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x0000277c (most recent call first): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 1122 in _browse_parse File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 1194 in parse File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2447 in _parse_arg File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2588 in _process_positional_arguments File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2812 in run File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\run.py"", line 36 in run File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\seq-view\tool.py"", line 528 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 2515 in _show_context_menu File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 2383 in show_context_menu File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 2264 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 301 in event_loop File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 867 in init File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 1018 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 87 in _run_code File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x0000277c (most recent call first): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 1122 in _browse_parse File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 1194 in parse File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2447 in _parse_arg File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2588 in _process_positional_arguments File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2812 in run File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\run.py"", line 36 in run File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\seq-view\tool.py"", line 528 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 2515 in _show_context_menu File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 2383 in show_context_menu File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 2264 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 301 in event_loop File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 867 in init File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 1018 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 87 in _run_code File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x0000277c (most recent call first): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 1122 in _browse_parse File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 1194 in parse File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2447 in _parse_arg File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2588 in _process_positional_arguments File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2812 in run File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\commands\run.py"", line 36 in run File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\seq-view\tool.py"", line 528 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 2515 in _show_context_menu File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 2383 in show_context_menu File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 2264 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py"", line 301 in event_loop File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 867 in init File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"", line 1018 in File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 87 in _run_code File ""C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x0000277c (most recent call first): File ""C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\numpy\core\_methods.py"", line 57 in _any Windows fatal exception: access violation Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e ===== Log before crash start ===== UCSF ChimeraX version: 1.3 (2021-12-08) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""C:\Users\pmmohammadi\OneDrive - Teknologian Tutkimuskeskus > VTT\Desktop\New folder 1\AIMS\MD simulations\Alphafold\AI- > PH45\prediction_2\model_1_unrelaxed.pdb"" format pdb Chain information for model_1_unrelaxed.pdb #1 --- Chain | Description A | No description available Alignment identifier is 1/A > select /A:384-404 143 atoms, 146 bonds, 21 residues, 1 model selected > select /A:76-404 1989 atoms, 2049 bonds, 329 residues, 1 model selected > select /A:1 7 atoms, 6 bonds, 1 residue, 1 model selected > select /A:1-404 2424 atoms, 2499 bonds, 404 residues, 1 model selected ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.3 (2021-12-08) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 3.3.0 - Build 27.20.100.8854 OpenGL renderer: Intel(R) UHD Graphics 620 OpenGL vendor: Intel Manufacturer: HP Model: HP EliteBook 840 G5 OS: Microsoft Windows 10 Enterprise (Build 18363) Memory: 8,425,512,960 MaxProcessMemory: 137,438,953,344 CPU: 8 Intel(R) Core(TM) i5-8350U CPU @ 1.70GHz OSLanguage: en-GB Locale: ('en_GB', 'cp1252') PyQt5 5.15.2, Qt 5.15.2 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 Babel: 2.9.1 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2021.10.8 cftime: 1.5.1.1 charset-normalizer: 2.0.9 ChimeraX-AddCharge: 1.2.2 ChimeraX-AddH: 2.1.11 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.2.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.31 ChimeraX-AtomicLibrary: 4.2 ChimeraX-AtomSearch: 2.0 ChimeraX-AtomSearchLibrary: 1.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.0 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.6.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.2 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.2 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5 ChimeraX-CommandLine: 1.1.5 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.3 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1.5 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.1.2 ChimeraX-Help: 1.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0 ChimeraX-Label: 1.1 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.4 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 2.0.4 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.4 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.2.6 ChimeraX-ModelPanel: 1.2.1 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.2 ChimeraX-OpenCommand: 1.7 ChimeraX-PDB: 2.6.5 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.4.6 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.1 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.6.1 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1 ChimeraX-ToolshedUtils: 1.2 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.13.7 ChimeraX-uniprot: 2.2 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.0.1 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.4 comtypes: 1.1.10 cxservices: 1.1 cycler: 0.11.0 Cython: 0.29.24 decorator: 5.1.0 docutils: 0.17.1 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 3.6.0 html2text: 2020.1.16 idna: 3.3 ihm: 0.21 imagecodecs: 2021.4.28 imagesize: 1.3.0 ipykernel: 5.5.5 ipython: 7.23.1 ipython-genutils: 0.2.0 jedi: 0.18.0 Jinja2: 3.0.1 jupyter-client: 6.1.12 jupyter-core: 4.9.1 kiwisolver: 1.3.2 lxml: 4.6.3 lz4: 3.1.3 MarkupSafe: 2.0.1 matplotlib: 3.4.3 matplotlib-inline: 0.1.3 msgpack: 1.0.2 netCDF4: 1.5.7 networkx: 2.6.3 numexpr: 2.8.0 numpy: 1.21.2 openvr: 1.16.801 packaging: 21.3 ParmEd: 3.2.0 parso: 0.8.3 pickleshare: 0.7.5 Pillow: 8.3.2 pip: 21.2.4 pkginfo: 1.7.1 prompt-toolkit: 3.0.23 psutil: 5.8.0 pycollada: 0.7.1 pydicom: 2.1.2 Pygments: 2.10.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.6 PyQt5-commercial: 5.15.2 PyQt5-sip: 12.8.1 PyQtWebEngine-commercial: 5.15.2 python-dateutil: 2.8.2 pytz: 2021.3 pywin32: 228 pyzmq: 22.3.0 qtconsole: 5.1.1 QtPy: 1.11.3 RandomWords: 0.3.0 requests: 2.26.0 scipy: 1.7.1 setuptools: 57.5.0 sfftk-rw: 0.7.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 4.2.0 sphinx-autodoc-typehints: 1.12.0 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-jurko: 0.6 tables: 3.6.1 tifffile: 2021.4.8 tinyarray: 1.2.3 tornado: 6.1 traitlets: 5.1.1 urllib3: 1.26.7 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.37.0 wheel-filename: 1.3.0 WMI: 1.5.1 }}} " defect closed normal Platform can't reproduce Tom Goddard all ChimeraX