id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
6136	Wayland does not support QWindow::requestActivate()	soon.hyouk@…	Greg Couch	"{{{
The following bug report has been submitted:
Platform:        Linux-5.17.0-rc3-1-mainline-x86_64-with-glibc2.33
ChimeraX Version: 1.4.dev202202110001 (2022-02-11 00:01:44 UTC)
Description
It appears that Wayland (compositor) is not fully supported?  I installed ChimeraX from source on Arch Linux.  On Wayland, I am getting an error (as shown on this bug report), and protein structures do not appear - just a blank screen.

I have tried using the Xorg compositor and it works perfectly so there must be some issue with Wayland?  

If there is a workaround or a fix, that would be helpful!

Log:
Startup Errors  
---  
error | Could not make graphics context current  
warning | QWaylandGLContext::makeCurrent: eglError: 3009, this: 0x7fd2646fef60  
  
UCSF ChimeraX version: 1.4.dev202202110001 (2022-02-11)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

QWaylandGLContext::makeCurrent: eglError: 3009, this: 0x7fd266e7b1c0  
  

No statusbar messages will be shown due to inadequate OpenGL  

Welcome to ChimeraX  
[Repeated 1 time(s)]

> open 4QW4 format mmcif fromDatabase pdb

Summary of feedback from opening 4QW4 fetched from pdb  
---  
warnings | Unknown polymer entity '17' near line 55068  
Missing or incomplete entity_poly_seq table. Inferred polymer connectivity.  
note | Opening mmCIF 4qw4  
  
4qw4 title:  
yCP in complex with carfilzomib [more info...]  
  
Chain information for 4qw4 #1  
---  
Chain | Description | UniProt  
A O | Proteasome subunit α type-2 | PSA2_YEAST  
B P | Proteasome subunit α type-3 | PSA3_YEAST  
C Q | Proteasome subunit α type-4 | PSA4_YEAST  
D R | Proteasome subunit α type-5 | PSA5_YEAST  
E S | Proteasome subunit α type-6 | PSA6_YEAST  
F T | Probable proteasome subunit α type-7 | PSA7_YEAST  
G U | Proteasome subunit α type-1 | PSA1_YEAST  
H V | Proteasome subunit β type-2 | PSB2_YEAST  
I W | Proteasome subunit β type-3 | PSB3_YEAST  
J X | Proteasome subunit β type-4 | PSB4_YEAST  
K Y | Proteasome subunit β type-5 | PSB5_YEAST  
L Z | Proteasome subunit β type-6 | PSB6_YEAST  
M a | Proteasome subunit β type-7 | PSB7_YEAST  
N b | Proteasome subunit β type-1 | PSB1_YEAST  
  
Non-standard residues in 4qw4 #1  
---  
3BV —
N-{(2S)-2-[(morpholin-4-ylacetyl)amino]-4-phenylbutanoyl}-L-leucyl-N-[(2R,3S,4S)-1,3-dihydroxy-2,6-dimethylheptan-4-yl]-L-phenylalaninamide
(CARFILZOMIB, bound form)  
CL — chloride ion  
MES — 2-(N-morpholino)-ethanesulfonic acid  
MG — magnesium ion  
  

Wayland does not support QWindow::requestActivate()  

  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  

Wayland does not support QWindow::requestActivate()  

QWaylandGLContext::makeCurrent: eglError: 3009, this: 0x7fd2646fef60  
  

  
  

Wayland does not support QWindow::requestActivate()  

> open 4QW4 format mmcif fromDatabase pdb

Summary of feedback from opening 4QW4 fetched from pdb  
---  
warnings | Unknown polymer entity '17' near line 55068  
Missing or incomplete entity_poly_seq table. Inferred polymer connectivity.  
note | Opening mmCIF 4qw4  
  
4qw4 title:  
yCP in complex with carfilzomib [more info...]  
  
Chain information for 4qw4 #2  
---  
Chain | Description | UniProt  
A O | Proteasome subunit α type-2 | PSA2_YEAST  
B P | Proteasome subunit α type-3 | PSA3_YEAST  
C Q | Proteasome subunit α type-4 | PSA4_YEAST  
D R | Proteasome subunit α type-5 | PSA5_YEAST  
E S | Proteasome subunit α type-6 | PSA6_YEAST  
F T | Probable proteasome subunit α type-7 | PSA7_YEAST  
G U | Proteasome subunit α type-1 | PSA1_YEAST  
H V | Proteasome subunit β type-2 | PSB2_YEAST  
I W | Proteasome subunit β type-3 | PSB3_YEAST  
J X | Proteasome subunit β type-4 | PSB4_YEAST  
K Y | Proteasome subunit β type-5 | PSB5_YEAST  
L Z | Proteasome subunit β type-6 | PSB6_YEAST  
M a | Proteasome subunit β type-7 | PSB7_YEAST  
N b | Proteasome subunit β type-1 | PSB1_YEAST  
  
Non-standard residues in 4qw4 #2  
---  
3BV —
N-{(2S)-2-[(morpholin-4-ylacetyl)amino]-4-phenylbutanoyl}-L-leucyl-N-[(2R,3S,4S)-1,3-dihydroxy-2,6-dimethylheptan-4-yl]-L-phenylalaninamide
(CARFILZOMIB, bound form)  
CL — chloride ion  
MES — 2-(N-morpholino)-ethanesulfonic acid  
MG — magnesium ion  
  

Wayland does not support QWindow::requestActivate()  

  
  




OpenGL version: unknown
Could not make opengl context current

Locale: en_US.UTF-8
Qt version: PyQt5 5.15.2, Qt 5.15.2
Qt platform: wayland

XDG_SESSION_TYPE=wayland
DESKTOP_SESSION=
XDG_SESSION_DESKTOP=
XDG_CURRENT_DESKTOP=KDE
DISPLAY=:0
WAYLAND_DISPLAY=wayland-0
Manufacturer: System manufacturer
Model: System Product Name
OS: Arch Linux  
Architecture: 64bit ELF
Virtual Machine: none
CPU: 16 AMD Ryzen 7 5700G with Radeon Graphics
Cache Size: 512 KB
Memory:
	               total        used        free      shared  buff/cache   available
	Mem:            14Gi       1.7Gi       3.0Gi        34Mi        10Gi        12Gi
	Swap:             0B          0B          0B

Graphics:
	09:00.0 VGA compatible controller [0300]: Advanced Micro Devices, Inc. [AMD/ATI] Cezanne [1002:1638] (rev c8)	
	Subsystem: ASUSTeK Computer Inc. Device [1043:8809]	
	Kernel driver in use: amdgpu

Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 3.0.0
    certifi: 2021.10.8
    cftime: 1.5.2
    charset-normalizer: 2.0.11
    ChimeraX-AddCharge: 1.2.3
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.2.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.36.2
    ChimeraX-AtomicLibrary: 6.0.1
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.1
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.0
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.6.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.2
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.1
    ChimeraX-CommandLine: 1.2.1
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.4.dev202202110001
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1
    ChimeraX-LinuxSupport: 1.0
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.6
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.7
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.5.1
    ChimeraX-ModelPanel: 1.3.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.8
    ChimeraX-PDB: 2.6.6
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.4.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.7.7
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.0.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.16
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    cxservices: 1.1
    cycler: 0.11.0
    Cython: 0.29.26
    debugpy: 1.5.1
    decorator: 5.1.1
    distro: 1.6.0
    docutils: 0.17.1
    entrypoints: 0.4
    filelock: 3.4.2
    fonttools: 4.29.1
    funcparserlib: 1.0.0a0
    grako: 3.16.5
    h5py: 3.6.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.26
    imagecodecs: 2021.11.20
    imagesize: 1.3.0
    ipykernel: 6.6.1
    ipython: 7.31.1
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.0.3
    jupyter-client: 7.1.0
    jupyter-core: 4.9.1
    kiwisolver: 1.3.2
    line-profiler: 3.4.0
    lxml: 4.7.1
    lz4: 3.1.10
    MarkupSafe: 2.0.1
    matplotlib: 3.5.1
    matplotlib-inline: 0.1.3
    msgpack: 1.0.3
    nest-asyncio: 1.5.4
    netCDF4: 1.5.8
    networkx: 2.6.3
    numexpr: 2.8.1
    numpy: 1.22.1
    openvr: 1.16.802
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.0.0
    pip: 21.3.1
    pkginfo: 1.8.2
    prompt-toolkit: 3.0.27
    psutil: 5.9.0
    ptyprocess: 0.7.0
    pycollada: 0.7.2
    pydicom: 2.2.2
    Pygments: 2.11.2
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.7
    PyQt5: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine: 5.15.2
    python-dateutil: 2.8.2
    pytz: 2021.3
    pyzmq: 22.3.0
    qtconsole: 5.2.2
    QtPy: 2.0.1
    RandomWords: 0.3.0
    requests: 2.27.1
    scipy: 1.7.3
    setuptools: 59.8.0
    sfftk-rw: 0.7.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.3.2
    sphinx-autodoc-typehints: 1.15.2
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-community: 1.0.0
    tables: 3.7.0
    tifffile: 2021.11.2
    tinyarray: 1.2.4
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.8
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.1
    wheel-filename: 1.3.0

}}}
"	defect	closed	normal		Platform		nonchimerax		Tom Goddard Zach Pearson				all	ChimeraX