id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 5787 Crash registering webcam command paulino@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-10.15.6-x86_64-i386-64bit ChimeraX Version: 1.2.5 (2021-05-24 04:13:57 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Current thread 0x000000010d874dc0 (most recent call first): File """", line 219 in _call_with_frames_removed File """", line 1101 in create_module File """", line 556 in module_from_spec File """", line 657 in _load_unlocked File """", line 975 in _find_and_load_unlocked File """", line 991 in _find_and_load File ""/opt/sbgrid/i386-mac/chimerax/1.2.5/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/Qt/QtMultimedia.py"", line 4 in File """", line 219 in _call_with_frames_removed File """", line 783 in exec_module File """", line 671 in _load_unlocked File """", line 975 in _find_and_load_unlocked File """", line 991 in _find_and_load File ""/opt/sbgrid/i386-mac/chimerax/1.2.5/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/webcam/webcam.py"", line 424 in File """", line 219 in _call_with_frames_removed File """", line 783 in exec_module File """", line 671 in _load_unlocked File """", line 975 in _find_and_load_unlocked File """", line 991 in _find_and_load File """", line 219 in _call_with_frames_removed File """", line 1042 in _handle_fromlist File ""/opt/sbgrid/i386-mac/chimerax/1.2.5/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/webcam/__init__.py"", line 20 in register_command File ""/opt/sbgrid/i386-mac/chimerax/1.2.5/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/toolshed/__init__.py"", line 1269 in register_command File ""/opt/sbgrid/i386-mac/chimerax/1.2.5/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/toolshed/info.py"", line 312 in _register_cmd File ""/opt/sbgrid/i386-mac/chimerax/1.2.5/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/toolshed/info.py"", line 302 in cb File ""/opt/sbgrid/i386-mac/chimerax/1.2.5/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/cli.py"", line 2105 in call File ""/opt/sbgrid/i386-mac/chimerax/1.2.5/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/cli.py"", line 2174 in lazy_register File ""/opt/sbgrid/i386-mac/chimerax/1.2.5/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/cli.py"", line 3419 in find_aliases File ""/opt/sbgrid/i386-mac/chimerax/1.2.5/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/cli.py"", line 3429 in find_aliases File ""/opt/sbgrid/i386-mac/chimerax/1.2.5/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/cli.py"", line 3435 in list_aliases File ""/opt/sbgrid/i386-mac/chimerax/1.2.5/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/session.py"", line 392 in take_snapshot File ""/opt/sbgrid/i386-mac/chimerax/1.2.5/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/session.py"", line 281 in process File ""/opt/sbgrid/i386-mac/chimerax/1.2.5/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/session.py"", line 260 in discovery File ""/opt/sbgrid/i386-mac/chimerax/1.2.5/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/session.py"", line 607 in save File ""/opt/sbgrid/i386-mac/chimerax/1.2.5/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/session.py"", line 877 in save File ""/opt/sbgrid/i386-mac/chimerax/1.2.5/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core_formats/__init__.py"", line 79 in save File ""/opt/sbgrid/i386-mac/chimerax/1.2.5/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/save_command/cmd.py"", line 87 in provider_save File ""/opt/sbgrid/i386-mac/chimerax/1.2.5/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/cli.py"", line 2852 in run File ""/opt/sbgrid/i386-mac/chimerax/1.2.5/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/save_command/cmd.py"", line 75 in cmd_save File ""/opt/sbgrid/i386-mac/chimerax/1.2.5/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/cli.py"", line 2852 in run File ""/opt/sbgrid/i386-mac/chimerax/1.2.5/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/run.py"", line 36 in run File ""/opt/sbgrid/i386-mac/chimerax/1.2.5/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/save_command/dialog.py"", line 51 in display File ""/opt/sbgrid/i386-mac/chimerax/1.2.5/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/save_command/dialog.py"", line 127 in show_save_file_dialog File ""/opt/sbgrid/i386-mac/chimerax/1.2.5/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/save_command/dialog.py"", line 116 in File ""/opt/sbgrid/i386-mac/chimerax/1.2.5/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/ui/gui.py"", line 293 in event_loop File ""/opt/sbgrid/i386-mac/chimerax/1.2.5/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/ChimeraX_main.py"", line 866 in init File ""/opt/sbgrid/i386-mac/chimerax/1.2.5/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/ChimeraX_main.py"", line 1015 in File ""/opt/sbgrid/i386-mac/chimerax/1.2.5/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/runpy.py"", line 87 in _run_code File ""/opt/sbgrid/i386-mac/chimerax/1.2.5/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/runpy.py"", line 194 in _run_module_as_main Process: ChimeraX [46744] Path: /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/MacOS/ChimeraX Identifier: edu.ucsf.cgl.ChimeraX Version: 1.2.5 (1.2.5.0) Code Type: X86-64 (Native) Parent Process: ??? [1] Responsible: ChimeraX [46744] User ID: 501 Date/Time: 2021-12-14 23:03:12.272 -0800 OS Version: Mac OS X 10.15.6 (19G73) Report Version: 12 Bridge OS Version: 4.6 (17P6065) Anonymous UUID: 78B83D24-5FA1-CEDC-7626-A65A78D8D801 Sleep/Wake UUID: FEA01185-56B7-4FBB-9E9A-325E6F7252CB Time Awake Since Boot: 660000 seconds Time Since Wake: 24000 seconds System Integrity Protection: enabled Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread Exception Type: EXC_BAD_ACCESS (SIGSEGV) Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000020 Exception Note: EXC_CORPSE_NOTIFY VM Regions Near 0x20: --> __TEXT 000000010058c000-000000010058d000 [ 4K] r-x/r-x SM=COW /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/MacOS/ChimeraX Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread 0 libsystem_kernel.dylib 0x00007fff706e733a __pthread_kill + 10 1 libsystem_pthread.dylib 0x00007fff707a3e60 pthread_kill + 430 2 libsystem_c.dylib 0x00007fff705fe93e raise + 26 3 libsystem_platform.dylib 0x00007fff707985fd _sigtramp + 29 4 ??? 000000000000000000 0 + 0 5 sip.cpython-38-darwin.so 0x0000000117e083be sip_api_convert_from_type + 254 6 QtCore.abi3.so 0x00000001159db41f Chimera::toPyObject(void*) const + 783 7 QtCore.abi3.so 0x00000001159e4823 PyQtSlot::invoke(void**, _object*, void*, bool) const + 307 8 QtCore.abi3.so 0x00000001159e5455 PyQtSlotProxy::unislot(void**) + 85 9 QtCore.abi3.so 0x00000001159e53ca PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58 10 QtCore 0x0000000115dc8f6e void doActivate(QObject*, int, void**) + 1118 11 QtCore 0x0000000115dc0041 QObject::destroyed(QObject*) + 65 12 QtWidgets 0x00000001183f1c3d QWidget::~QWidget() + 893 13 QtWidgets.abi3.so 0x0000000117f5d157 sipQPushButton::~sipQPushButton() + 55 14 QtCore 0x0000000115dc0164 QObjectPrivate::deleteChildren() + 228 15 QtWidgets 0x00000001183f1cae QWidget::~QWidget() + 1006 16 QtWidgets.abi3.so 0x0000000117f83257 sipQFrame::~sipQFrame() + 55 17 QtCore 0x0000000115dc0164 QObjectPrivate::deleteChildren() + 228 18 QtWidgets 0x00000001183f1cae QWidget::~QWidget() + 1006 19 QtWidgets.abi3.so 0x0000000117f83257 sipQFrame::~sipQFrame() + 55 20 QtCore 0x0000000115dc0164 QObjectPrivate::deleteChildren() + 228 21 QtWidgets 0x00000001183f1cae QWidget::~QWidget() + 1006 22 QtWidgets.abi3.so 0x0000000117f83257 sipQFrame::~sipQFrame() + 55 23 QtCore 0x0000000115dc0164 QObjectPrivate::deleteChildren() + 228 24 QtWidgets 0x00000001183f1cae QWidget::~QWidget() + 1006 25 QtWidgets 0x00000001183f253e QWidget::~QWidget() + 14 26 QtCore 0x0000000115dc0164 QObjectPrivate::deleteChildren() + 228 27 QtWidgets 0x00000001183f1cae QWidget::~QWidget() + 1006 28 QtWidgets.abi3.so 0x0000000117ea8da7 sipQScrollArea::~sipQScrollArea() + 55 29 QtCore 0x0000000115dc0164 QObjectPrivate::deleteChildren() + 228 30 QtWidgets 0x00000001183f1cae QWidget::~QWidget() + 1006 31 QtWidgets.abi3.so 0x0000000117f909d7 sipQWidget::~sipQWidget() + 55 32 QtCore 0x0000000115dc0164 QObjectPrivate::deleteChildren() + 228 33 QtWidgets 0x00000001183f1cae QWidget::~QWidget() + 1006 34 QtWidgets.abi3.so 0x0000000117f909d7 sipQWidget::~sipQWidget() + 55 35 QtCore 0x0000000115dc0164 QObjectPrivate::deleteChildren() + 228 36 QtWidgets 0x00000001183f1cae QWidget::~QWidget() + 1006 37 QtWidgets.abi3.so 0x0000000117f3e017 sipQDockWidget::~sipQDockWidget() + 55 38 sip.cpython-38-darwin.so 0x0000000117e0ad66 forgetObject + 182 39 sip.cpython-38-darwin.so 0x0000000117e0a945 sipWrapper_dealloc + 37 40 org.python.python 0x0000000100605402 subtype_dealloc + 946 41 org.python.python 0x00000001005e5df2 dict_dealloc + 178 42 org.python.python 0x00000001006160af subtype_clear + 239 43 org.python.python 0x00000001006e8079 collect + 2905 44 org.python.python 0x00000001006e8744 _PyObject_GC_Alloc + 324 45 org.python.python 0x00000001006e87b5 _PyObject_GC_New + 21 46 org.python.python 0x000000010064881a PyWeakref_NewRef + 154 47 org.python.python 0x0000000100606fda PyType_Ready + 7018 48 org.python.python 0x0000000100609063 type_new + 4371 49 org.python.python 0x0000000100607702 type_call + 50 50 org.python.python 0x00000001005b4ef2 PyObject_Call + 162 51 sip.cpython-38-darwin.so 0x0000000117e0cf34 sip_api_init_module + 644 52 QtMultimedia.abi3.so 0x000000014e22c6ae PyInit_QtMultimedia + 350 53 org.python.python 0x00000001006b1cea _PyImport_LoadDynamicModuleWithSpec + 714 54 org.python.python 0x00000001006b14ab _imp_create_dynamic + 315 55 org.python.python 0x00000001005f15ff cfunction_vectorcall_FASTCALL + 175 56 org.python.python 0x00000001005b4dad PyVectorcall_Call + 109 57 org.python.python 0x0000000100680aeb _PyEval_EvalFrameDefault + 27339 58 org.python.python 0x0000000100684454 _PyEval_EvalCodeWithName + 2804 59 org.python.python 0x00000001005b556e _PyFunction_Vectorcall + 270 60 org.python.python 0x000000010068360c call_function + 444 61 org.python.python 0x000000010068046e _PyEval_EvalFrameDefault + 25678 62 org.python.python 0x00000001005b53d0 function_code_fastcall + 128 63 org.python.python 0x000000010068360c call_function + 444 64 org.python.python 0x000000010068044a _PyEval_EvalFrameDefault + 25642 65 org.python.python 0x00000001005b53d0 function_code_fastcall + 128 66 org.python.python 0x000000010068360c call_function + 444 67 org.python.python 0x0000000100680505 _PyEval_EvalFrameDefault + 25829 68 org.python.python 0x00000001005b53d0 function_code_fastcall + 128 69 org.python.python 0x000000010068360c call_function + 444 70 org.python.python 0x0000000100680505 _PyEval_EvalFrameDefault + 25829 71 org.python.python 0x00000001005b53d0 function_code_fastcall + 128 72 org.python.python 0x000000010068360c call_function + 444 73 org.python.python 0x0000000100680505 _PyEval_EvalFrameDefault + 25829 74 org.python.python 0x00000001005b53d0 function_code_fastcall + 128 75 org.python.python 0x00000001005b6c26 object_vacall + 374 76 org.python.python 0x00000001005b6d8b _PyObject_CallMethodIdObjArgs + 235 77 org.python.python 0x00000001006b02bc PyImport_ImportModuleLevelObject + 1740 78 org.python.python 0x000000010067edc3 _PyEval_EvalFrameDefault + 19875 79 org.python.python 0x0000000100684454 _PyEval_EvalCodeWithName + 2804 80 org.python.python 0x0000000100679f44 PyEval_EvalCode + 100 81 org.python.python 0x0000000100677332 builtin_exec + 626 82 org.python.python 0x00000001005f15ff cfunction_vectorcall_FASTCALL + 175 83 org.python.python 0x00000001005b4dad PyVectorcall_Call + 109 84 org.python.python 0x0000000100680aeb _PyEval_EvalFrameDefault + 27339 85 org.python.python 0x0000000100684454 _PyEval_EvalCodeWithName + 2804 86 org.python.python 0x00000001005b556e _PyFunction_Vectorcall + 270 87 org.python.python 0x000000010068360c call_function + 444 88 org.python.python 0x000000010068046e _PyEval_EvalFrameDefault + 25678 89 org.python.python 0x00000001005b53d0 function_code_fastcall + 128 90 org.python.python 0x000000010068360c call_function + 444 91 org.python.python 0x000000010068044a _PyEval_EvalFrameDefault + 25642 92 org.python.python 0x00000001005b53d0 function_code_fastcall + 128 93 org.python.python 0x000000010068360c call_function + 444 94 org.python.python 0x0000000100680505 _PyEval_EvalFrameDefault + 25829 95 org.python.python 0x00000001005b53d0 function_code_fastcall + 128 96 org.python.python 0x000000010068360c call_function + 444 97 org.python.python 0x0000000100680505 _PyEval_EvalFrameDefault + 25829 98 org.python.python 0x00000001005b53d0 function_code_fastcall + 128 99 org.python.python 0x00000001005b6c26 object_vacall + 374 100 org.python.python 0x00000001005b6d8b _PyObject_CallMethodIdObjArgs + 235 101 org.python.python 0x00000001006b02bc PyImport_ImportModuleLevelObject + 1740 102 org.python.python 0x000000010067edc3 _PyEval_EvalFrameDefault + 19875 103 org.python.python 0x0000000100684454 _PyEval_EvalCodeWithName + 2804 104 org.python.python 0x0000000100679f44 PyEval_EvalCode + 100 105 org.python.python 0x0000000100677332 builtin_exec + 626 106 org.python.python 0x00000001005f15ff cfunction_vectorcall_FASTCALL + 175 107 org.python.python 0x00000001005b4dad PyVectorcall_Call + 109 108 org.python.python 0x0000000100680aeb _PyEval_EvalFrameDefault + 27339 109 org.python.python 0x0000000100684454 _PyEval_EvalCodeWithName + 2804 110 org.python.python 0x00000001005b556e _PyFunction_Vectorcall + 270 111 org.python.python 0x000000010068360c call_function + 444 112 org.python.python 0x000000010068046e _PyEval_EvalFrameDefault + 25678 113 org.python.python 0x00000001005b53d0 function_code_fastcall + 128 114 org.python.python 0x000000010068360c call_function + 444 115 org.python.python 0x000000010068044a _PyEval_EvalFrameDefault + 25642 116 org.python.python 0x00000001005b53d0 function_code_fastcall + 128 117 org.python.python 0x000000010068360c call_function + 444 118 org.python.python 0x0000000100680505 _PyEval_EvalFrameDefault + 25829 119 org.python.python 0x00000001005b53d0 function_code_fastcall + 128 120 org.python.python 0x000000010068360c call_function + 444 121 org.python.python 0x0000000100680505 _PyEval_EvalFrameDefault + 25829 122 org.python.python 0x00000001005b53d0 function_code_fastcall + 128 123 org.python.python 0x00000001005b6c26 object_vacall + 374 124 org.python.python 0x00000001005b6d8b _PyObject_CallMethodIdObjArgs + 235 125 org.python.python 0x00000001006b02bc PyImport_ImportModuleLevelObject + 1740 126 org.python.python 0x00000001006762f7 builtin___import__ + 135 127 org.python.python 0x00000001005b5018 cfunction_call_varargs + 120 128 org.python.python 0x0000000100680aeb _PyEval_EvalFrameDefault + 27339 129 org.python.python 0x0000000100684454 _PyEval_EvalCodeWithName + 2804 130 org.python.python 0x00000001005b556e _PyFunction_Vectorcall + 270 131 org.python.python 0x000000010068360c call_function + 444 132 org.python.python 0x0000000100680505 _PyEval_EvalFrameDefault + 25829 133 org.python.python 0x0000000100684454 _PyEval_EvalCodeWithName + 2804 134 org.python.python 0x00000001005b556e _PyFunction_Vectorcall + 270 135 org.python.python 0x00000001005b6c26 object_vacall + 374 136 org.python.python 0x00000001005b6d8b _PyObject_CallMethodIdObjArgs + 235 137 org.python.python 0x00000001006b04cd PyImport_ImportModuleLevelObject + 2269 138 org.python.python 0x000000010067edc3 _PyEval_EvalFrameDefault + 19875 139 org.python.python 0x00000001005b53d0 function_code_fastcall + 128 140 org.python.python 0x000000010068360c call_function + 444 141 org.python.python 0x0000000100680505 _PyEval_EvalFrameDefault + 25829 142 org.python.python 0x00000001005b53d0 function_code_fastcall + 128 143 org.python.python 0x00000001005b7a9a method_vectorcall + 170 144 org.python.python 0x000000010068360c call_function + 444 145 org.python.python 0x000000010068046e _PyEval_EvalFrameDefault + 25678 146 org.python.python 0x00000001005b53d0 function_code_fastcall + 128 147 org.python.python 0x000000010068360c call_function + 444 148 org.python.python 0x000000010068044a _PyEval_EvalFrameDefault + 25642 149 org.python.python 0x0000000100684454 _PyEval_EvalCodeWithName + 2804 150 org.python.python 0x00000001005b556e _PyFunction_Vectorcall + 270 151 org.python.python 0x000000010068360c call_function + 444 152 org.python.python 0x000000010068046e _PyEval_EvalFrameDefault + 25678 153 org.python.python 0x00000001005b53d0 function_code_fastcall + 128 154 org.python.python 0x000000010068360c call_function + 444 155 org.python.python 0x000000010068044a _PyEval_EvalFrameDefault + 25642 156 org.python.python 0x00000001005b53d0 function_code_fastcall + 128 157 org.python.python 0x000000010068360c call_function + 444 158 org.python.python 0x000000010068044a _PyEval_EvalFrameDefault + 25642 159 org.python.python 0x00000001005c58ae gen_send_ex + 206 160 org.python.python 0x000000010067c779 _PyEval_EvalFrameDefault + 10073 161 org.python.python 0x00000001005c58ae gen_send_ex + 206 162 org.python.python 0x00000001005d1230 list_extend + 640 163 org.python.python 0x00000001005d299f list___init__ + 335 164 org.python.python 0x00000001006077f9 type_call + 297 165 org.python.python 0x00000001005b4a85 _PyObject_MakeTpCall + 373 166 org.python.python 0x0000000100683665 call_function + 533 167 org.python.python 0x0000000100680505 _PyEval_EvalFrameDefault + 25829 168 org.python.python 0x0000000100684454 _PyEval_EvalCodeWithName + 2804 169 org.python.python 0x00000001005b556e _PyFunction_Vectorcall + 270 170 org.python.python 0x000000010068360c call_function + 444 171 org.python.python 0x0000000100680505 _PyEval_EvalFrameDefault + 25829 172 org.python.python 0x00000001005b53d0 function_code_fastcall + 128 173 org.python.python 0x000000010068360c call_function + 444 174 org.python.python 0x000000010068046e _PyEval_EvalFrameDefault + 25678 175 org.python.python 0x00000001005b53d0 function_code_fastcall + 128 176 org.python.python 0x000000010068360c call_function + 444 177 org.python.python 0x000000010068044a _PyEval_EvalFrameDefault + 25642 178 org.python.python 0x00000001005b53d0 function_code_fastcall + 128 179 org.python.python 0x000000010068360c call_function + 444 180 org.python.python 0x000000010068044a _PyEval_EvalFrameDefault + 25642 181 org.python.python 0x0000000100684454 _PyEval_EvalCodeWithName + 2804 182 org.python.python 0x00000001005b556e _PyFunction_Vectorcall + 270 183 org.python.python 0x00000001005b7a9a method_vectorcall + 170 184 org.python.python 0x000000010068360c call_function + 444 185 org.python.python 0x0000000100680598 _PyEval_EvalFrameDefault + 25976 186 org.python.python 0x0000000100684454 _PyEval_EvalCodeWithName + 2804 187 org.python.python 0x00000001005b556e _PyFunction_Vectorcall + 270 188 org.python.python 0x00000001005b4dad PyVectorcall_Call + 109 189 org.python.python 0x0000000100680978 _PyEval_EvalFrameDefault + 26968 190 org.python.python 0x0000000100684454 _PyEval_EvalCodeWithName + 2804 191 org.python.python 0x00000001005b556e _PyFunction_Vectorcall + 270 192 org.python.python 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libsystem_pthread.dylib 0x00007fff7079fb8b thread_start + 15 Thread 11:: Chrome_IOThread 0 libsystem_kernel.dylib 0x00007fff706e9b96 kevent64 + 10 1 QtWebEngineCore 0x000000011bf87e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330 2 QtWebEngineCore 0x000000011bf87cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167 3 QtWebEngineCore 0x000000011bf1062b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 4 QtWebEngineCore 0x000000011bed47cb base::RunLoop::Run() + 395 5 QtWebEngineCore 0x000000011fe54f06 content::BrowserProcessSubThread::IOThreadRun(base::RunLoop*) + 102 6 QtWebEngineCore 0x000000011bf2fa7d base::Thread::ThreadMain() + 413 7 QtWebEngineCore 0x000000011bf78e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff707a4109 _pthread_start + 148 9 libsystem_pthread.dylib 0x00007fff7079fb8b thread_start + 15 Thread 12:: 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0x000000011bf7d2cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x000000011bea51db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x000000011bf1062b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x000000011bed47cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x000000011bf2fa7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x000000011bf78e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff707a4109 _pthread_start + 148 10 libsystem_pthread.dylib 0x00007fff7079fb8b thread_start + 15 Thread 21:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff706e0dfa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff706e1170 mach_msg + 60 2 QtWebEngineCore 0x000000011bf7d492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000011bf7d2cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x000000011bea51db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x000000011bf1062b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x000000011bed47cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x000000011bf2fa7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x000000011bf78e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff707a4109 _pthread_start + 148 10 libsystem_pthread.dylib 0x00007fff7079fb8b thread_start + 15 Thread 22:: com.apple.NSEventThread 0 libsystem_kernel.dylib 0x00007fff706e0dfa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff706e1170 mach_msg + 60 2 com.apple.CoreFoundation 0x00007fff366cdef5 __CFRunLoopServiceMachPort + 247 3 com.apple.CoreFoundation 0x00007fff366cc9c2 __CFRunLoopRun + 1319 4 com.apple.CoreFoundation 0x00007fff366cbe3e CFRunLoopRunSpecific + 462 5 com.apple.AppKit 0x00007fff33adf954 _NSEventThread + 132 6 libsystem_pthread.dylib 0x00007fff707a4109 _pthread_start + 148 7 libsystem_pthread.dylib 0x00007fff7079fb8b thread_start + 15 Thread 23:: ThreadPoolSingleThreadSharedBackgroundBlocking1 0 libsystem_kernel.dylib 0x00007fff706e0dfa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff706e1170 mach_msg + 60 2 QtWebEngineCore 0x000000011bf7d492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000011bf7d2cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x000000011bf2576a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42 5 QtWebEngineCore 0x000000011bf25e3d base::internal::WorkerThread::RunWorker() + 237 6 QtWebEngineCore 0x000000011bf25c74 base::internal::WorkerThread::RunBackgroundSharedWorker() + 20 7 QtWebEngineCore 0x000000011bf78e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff707a4109 _pthread_start + 148 9 libsystem_pthread.dylib 0x00007fff7079fb8b thread_start + 15 Thread 24:: ThreadPoolForegroundWorker 0 libsystem_kernel.dylib 0x00007fff706e0dfa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff706e1170 mach_msg + 60 2 QtWebEngineCore 0x000000011bf7d492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000011bf25778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56 4 QtWebEngineCore 0x000000011bf26150 base::internal::WorkerThread::RunWorker() + 1024 5 QtWebEngineCore 0x000000011bf25cd4 base::internal::WorkerThread::RunPooledWorker() + 20 6 QtWebEngineCore 0x000000011bf78e07 base::(anonymous namespace)::ThreadFunc(void*) + 87 7 libsystem_pthread.dylib 0x00007fff707a4109 _pthread_start + 148 8 libsystem_pthread.dylib 0x00007fff7079fb8b thread_start + 15 Thread 25:: QFileInfoGatherer 0 libsystem_kernel.dylib 0x00007fff706e3882 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff707a4425 _pthread_cond_wait + 698 2 QtCore 0x0000000115bc775b QWaitConditionPrivate::wait(QDeadlineTimer) + 59 3 QtCore 0x0000000115bc769d QWaitCondition::wait(QMutex*, QDeadlineTimer) + 93 4 QtWidgets 0x00000001185f8c68 QFileInfoGatherer::run() + 136 5 QtCore 0x0000000115bbf619 QThreadPrivate::start(void*) + 329 6 libsystem_pthread.dylib 0x00007fff707a4109 _pthread_start + 148 7 libsystem_pthread.dylib 0x00007fff7079fb8b thread_start + 15 Thread 26: 0 libsystem_pthread.dylib 0x00007fff7079fb68 start_wqthread + 0 Thread 27:: Thread (pooled) 0 libsystem_kernel.dylib 0x00007fff706e3882 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff707a4425 _pthread_cond_wait + 698 2 QtCore 0x0000000115bc7aaf QWaitConditionPrivate::wait_relative(QDeadlineTimer) + 303 3 QtCore 0x0000000115bc777e QWaitConditionPrivate::wait(QDeadlineTimer) + 94 4 QtCore 0x0000000115bc769d QWaitCondition::wait(QMutex*, QDeadlineTimer) + 93 5 QtCore 0x0000000115bc3ccd QThreadPoolThread::run() + 605 6 QtCore 0x0000000115bbf619 QThreadPrivate::start(void*) + 329 7 libsystem_pthread.dylib 0x00007fff707a4109 _pthread_start + 148 8 libsystem_pthread.dylib 0x00007fff7079fb8b thread_start + 15 Thread 28:: Thread (pooled) 0 libsystem_kernel.dylib 0x00007fff706e3882 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff707a4425 _pthread_cond_wait + 698 2 QtCore 0x0000000115bc7aaf QWaitConditionPrivate::wait_relative(QDeadlineTimer) + 303 3 QtCore 0x0000000115bc777e QWaitConditionPrivate::wait(QDeadlineTimer) + 94 4 QtCore 0x0000000115bc769d QWaitCondition::wait(QMutex*, QDeadlineTimer) + 93 5 QtCore 0x0000000115bc3ccd QThreadPoolThread::run() + 605 6 QtCore 0x0000000115bbf619 QThreadPrivate::start(void*) + 329 7 libsystem_pthread.dylib 0x00007fff707a4109 _pthread_start + 148 8 libsystem_pthread.dylib 0x00007fff7079fb8b thread_start + 15 Thread 29:: Thread (pooled) 0 libsystem_kernel.dylib 0x00007fff706e3882 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff707a4425 _pthread_cond_wait + 698 2 QtCore 0x0000000115bc7aaf QWaitConditionPrivate::wait_relative(QDeadlineTimer) + 303 3 QtCore 0x0000000115bc777e QWaitConditionPrivate::wait(QDeadlineTimer) + 94 4 QtCore 0x0000000115bc769d QWaitCondition::wait(QMutex*, QDeadlineTimer) + 93 5 QtCore 0x0000000115bc3ccd QThreadPoolThread::run() + 605 6 QtCore 0x0000000115bbf619 QThreadPrivate::start(void*) + 329 7 libsystem_pthread.dylib 0x00007fff707a4109 _pthread_start + 148 8 libsystem_pthread.dylib 0x00007fff7079fb8b thread_start + 15 Thread 30:: Thread (pooled) 0 libsystem_kernel.dylib 0x00007fff706e3882 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff707a4425 _pthread_cond_wait + 698 2 QtCore 0x0000000115bc7aaf QWaitConditionPrivate::wait_relative(QDeadlineTimer) + 303 3 QtCore 0x0000000115bc777e QWaitConditionPrivate::wait(QDeadlineTimer) + 94 4 QtCore 0x0000000115bc769d QWaitCondition::wait(QMutex*, QDeadlineTimer) + 93 5 QtCore 0x0000000115bc3ccd QThreadPoolThread::run() + 605 6 QtCore 0x0000000115bbf619 QThreadPrivate::start(void*) + 329 7 libsystem_pthread.dylib 0x00007fff707a4109 _pthread_start + 148 8 libsystem_pthread.dylib 0x00007fff7079fb8b thread_start + 15 Thread 31: 0 libsystem_pthread.dylib 0x00007fff7079fb68 start_wqthread + 0 Thread 32: 0 libsystem_pthread.dylib 0x00007fff7079fb68 start_wqthread + 0 Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000000000000 rbx: 0x000000010d874dc0 rcx: 0x00007fe628047a58 rdx: 0x0000000000000000 rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x00007fe628047a80 rsp: 0x00007fe628047a58 r8: 0x00007fe628047f48 r9: 0x6347f5f7240561cd r10: 0x000000010d874dc0 r11: 0x0000000000000246 r12: 0x0000000000000307 r13: 0x00007fe634c7c240 r14: 0x000000000000000b r15: 0x0000000000000016 rip: 0x00007fff706e733a rfl: 0x0000000000000246 cr2: 0x00007000039edff8 Logical CPU: 0 Error Code: 0x02000148 Trap Number: 133 Binary Images: 0x10058c000 - 0x10058cff3 +edu.ucsf.cgl.ChimeraX (1.2.5 - 1.2.5.0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/MacOS/ChimeraX 0x100594000 - 0x1007caff7 +org.python.python (3.8.8, [c] 2001-2019 Python Software Foundation. - 3.8.8) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/Python 0x10093d000 - 0x10093fff7 +_heapq.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_heapq.cpython-38-darwin.so 0x100947000 - 0x10094cff7 +zlib.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/zlib.cpython-38-darwin.so 0x100956000 - 0x100958ff7 +_bz2.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_bz2.cpython-38-darwin.so 0x100961000 - 0x100992fff +_lzma.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_lzma.cpython-38-darwin.so 0x1009a1000 - 0x1009a2ff7 +grp.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/grp.cpython-38-darwin.so 0x1009aa000 - 0x1009b2fff +math.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/math.cpython-38-darwin.so 0x1009be000 - 0x1009bfff7 +_bisect.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_bisect.cpython-38-darwin.so 0x1009c7000 - 0x1009cbff7 +_sha512.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_sha512.cpython-38-darwin.so 0x1009d4000 - 0x1009d5ff7 +_random.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_random.cpython-38-darwin.so 0x1009de000 - 0x1009e3fff +_json.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_json.cpython-38-darwin.so 0x1009ed000 - 0x100a01ff7 +_ssl.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_ssl.cpython-38-darwin.so 0x100a1a000 - 0x100a72fff +libssl.1.1.dylib (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/libssl.1.1.dylib 0x100aa1000 - 0x100cb7da7 +libcrypto.1.1.dylib (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/libcrypto.1.1.dylib 0x100d55000 - 0x100d62fff +_socket.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_socket.cpython-38-darwin.so 0x100d6f000 - 0x100d72ff7 +select.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/select.cpython-38-darwin.so 0x100d7c000 - 0x100d81fff +_struct.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_struct.cpython-38-darwin.so 0x100d8e000 - 0x100d92fff +binascii.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/binascii.cpython-38-darwin.so 0x100d9b000 - 0x100d9eff7 +_hashlib.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_hashlib.cpython-38-darwin.so 0x100da8000 - 0x100daefff +_blake2.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_blake2.cpython-38-darwin.so 0x100db8000 - 0x100dc8fff +_sha3.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_sha3.cpython-38-darwin.so 0x100dd2000 - 0x100de1fff +_datetime.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_datetime.cpython-38-darwin.so 0x100df2000 - 0x100df2ff7 +_scproxy.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_scproxy.cpython-38-darwin.so 0x100dfa000 - 0x100e43fff +_decimal.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_decimal.cpython-38-darwin.so 0x100e62000 - 0x100e8bfff +pyexpat.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/pyexpat.cpython-38-darwin.so 0x100ea4000 - 0x100ea5fff +_queue.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_queue.cpython-38-darwin.so 0x100eae000 - 0x100ec4ff7 +_pickle.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_pickle.cpython-38-darwin.so 0x100ed4000 - 0x100ed8ff7 +_csv.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_csv.cpython-38-darwin.so 0x100ee2000 - 0x100ee3fff +_posixsubprocess.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_posixsubprocess.cpython-38-darwin.so 0x100eeb000 - 0x101260feb +_multiarray_umath.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/core/_multiarray_umath.cpython-38-darwin.so 0x101388000 - 0x104ddf9bf +libopenblas.0.dylib (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/.dylibs/libopenblas.0.dylib 0x1050d4000 - 0x1051ebff7 +libgfortran.3.dylib (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/.dylibs/libgfortran.3.dylib 0x105259000 - 0x10528ffff +libquadmath.0.dylib (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/.dylibs/libquadmath.0.dylib 0x1052a3000 - 0x1052b8ff7 +libgcc_s.1.dylib (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/.dylibs/libgcc_s.1.dylib 0x10d2c8000 - 0x10d2d5ff7 +_multiarray_tests.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/core/_multiarray_tests.cpython-38-darwin.so 0x10d2eb000 - 0x10d2fcfff +_ctypes.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_ctypes.cpython-38-darwin.so 0x10d313000 - 0x10d314ffb +lapack_lite.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/linalg/lapack_lite.cpython-38-darwin.so 0x10d31c000 - 0x10d335ffb +_umath_linalg.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/linalg/_umath_linalg.cpython-38-darwin.so 0x10d349000 - 0x10d35afff +_pocketfft_internal.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/fft/_pocketfft_internal.cpython-38-darwin.so 0x10d363000 - 0x10d3ceff7 +mtrand.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/random/mtrand.cpython-38-darwin.so 0x10d429000 - 0x10d447ff3 +bit_generator.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/random/bit_generator.cpython-38-darwin.so 0x10d468000 - 0x10d49aff3 +_common.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/random/_common.cpython-38-darwin.so 0x10d4b7000 - 0x10d506ff3 +_bounded_integers.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/random/_bounded_integers.cpython-38-darwin.so 0x10d52d000 - 0x10d53bff3 +_mt19937.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/random/_mt19937.cpython-38-darwin.so 0x10d54c000 - 0x10d558ff7 +_philox.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/random/_philox.cpython-38-darwin.so 0x10d568000 - 0x10d571ffb +_pcg64.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/random/_pcg64.cpython-38-darwin.so 0x10d580000 - 0x10d587ff3 +_sfc64.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/random/_sfc64.cpython-38-darwin.so 0x10d594000 - 0x10d615ffb +_generator.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/random/_generator.cpython-38-darwin.so 0x10d675000 - 0x10d675fff +_arrays.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/arrays/_arrays.cpython-38-darwin.so 0x10d67c000 - 0x10d71dff7 +libarrays.dylib (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/arrays/lib/libarrays.dylib 0x10d741000 - 0x10d75fff3 +_geometry.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/geometry/_geometry.cpython-38-darwin.so 0x10d774000 - 0x10d774fff +_opcode.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_opcode.cpython-38-darwin.so 0x10d78b000 - 0x10d797ffb +QtQuickWidgets (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt5/Qt/lib/QtQuickWidgets.framework/Versions/5/QtQuickWidgets 0x10d7aa000 - 0x10d83bf47 dyld (750.6) /usr/lib/dyld 0x1158af000 - 0x115a0eff7 +QtCore.abi3.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt5/QtCore.abi3.so 0x115b9d000 - 0x11610d7df +QtCore (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt5/Qt/lib/QtCore.framework/Versions/5/QtCore 0x117e03000 - 0x117e1aff7 +sip.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt5/sip.cpython-38-darwin.so 0x117e31000 - 0x1180c1ff7 +QtWidgets.abi3.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt5/QtWidgets.abi3.so 0x1183b8000 - 0x1187fefff +QtWidgets (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt5/Qt/lib/QtWidgets.framework/Versions/5/QtWidgets 0x1189fb000 - 0x118ee4fff +QtGui (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt5/Qt/lib/QtGui.framework/Versions/5/QtGui 0x119097000 - 0x119200ff3 +QtGui.abi3.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt5/QtGui.abi3.so 0x1193ad000 - 0x1193cefff +QtWebEngineWidgets.abi3.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt5/QtWebEngineWidgets.abi3.so 0x119400000 - 0x119423ff7 +QtWebEngineWidgets (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt5/Qt/lib/QtWebEngineWidgets.framework/Versions/5/QtWebEngineWidgets 0x11945b000 - 0x121149f4f +QtWebEngineCore (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt5/Qt/lib/QtWebEngineCore.framework/Versions/5/QtWebEngineCore 0x1257c3000 - 0x125b07ff7 +QtQuick (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt5/Qt/lib/QtQuick.framework/Versions/5/QtQuick 0x125d2b000 - 0x125d56ff7 +QtPrintSupport (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt5/Qt/lib/QtPrintSupport.framework/Versions/5/QtPrintSupport 0x125d84000 - 0x125ddcff3 +QtQmlModels (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt5/Qt/lib/QtQmlModels.framework/Versions/5/QtQmlModels 0x125e1d000 - 0x125e36ff3 +QtWebChannel (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt5/Qt/lib/QtWebChannel.framework/Versions/5/QtWebChannel 0x125e4d000 - 0x1261a5ffb +QtQml (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt5/Qt/lib/QtQml.framework/Versions/5/QtQml 0x126319000 - 0x126429fff +QtNetwork (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt5/Qt/lib/QtNetwork.framework/Versions/5/QtNetwork 0x1264b7000 - 0x12651dfff +QtPositioning (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt5/Qt/lib/QtPositioning.framework/Versions/5/QtPositioning 0x12654f000 - 0x126554ff7 +QtWebChannel.abi3.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt5/QtWebChannel.abi3.so 0x12655f000 - 0x1265c0fff +QtNetwork.abi3.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt5/QtNetwork.abi3.so 0x126641000 - 0x126651fff +QtWebEngineCore.abi3.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt5/QtWebEngineCore.abi3.so 0x12666a000 - 0x12668aff7 +QtPrintSupport.abi3.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt5/QtPrintSupport.abi3.so 0x12673d000 - 0x1268abfff +libqcocoa.dylib (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt5/Qt/plugins/platforms/libqcocoa.dylib 0x12693f000 - 0x12699eff3 +QtDBus (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt5/Qt/lib/QtDBus.framework/Versions/5/QtDBus 0x1275dd000 - 0x12779fff7 com.apple.AMDRadeonX6000GLDriver (3.10.15 - 3.1.0) /System/Library/Extensions/AMDRadeonX6000GLDriver.bundle/Contents/MacOS/AMDRadeonX6000GLDriver 0x127815000 - 0x127817fff +fcntl.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/fcntl.cpython-38-darwin.so 0x127834000 - 0x127837047 libobjc-trampolines.dylib (787.1) /usr/lib/libobjc-trampolines.dylib 0x127e64000 - 0x127e89fff +libqmacstyle.dylib (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt5/Qt/plugins/styles/libqmacstyle.dylib 0x13c8f4000 - 0x13c8f4fff +_load_libs.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/atomic_lib/_load_libs.cpython-38-darwin.so 0x13c8fc000 - 0x13c8fcffb +libpyinstance.dylib (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/atomic_lib/lib/libpyinstance.dylib 0x13c904000 - 0x13c905fff +lib_geometry.dylib (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/isolde/lib_geometry.dylib 0x13cc22000 - 0x13cca4ff3 +_map.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/map/_map.cpython-38-darwin.so 0x13ccd2000 - 0x13cdf8ff3 +libatomstruct.dylib (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/atomic_lib/lib/libatomstruct.dylib 0x13ce94000 - 0x13ce99ffb +libelement.dylib (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/atomic_lib/lib/libelement.dylib 0x13cea9000 - 0x13cedafff +libmolc.dylib (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/atomic/libmolc.dylib 0x13cf1a000 - 0x13cf6aff3 +cymol.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/atomic/cymol.cpython-38-darwin.so 0x13cfa9000 - 0x13cfc2fff +tinyarray.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/tinyarray.cpython-38-darwin.so 0x13cfdf000 - 0x13cfe6ff7 +cytmpl.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/atomic/cytmpl.cpython-38-darwin.so 0x13cff6000 - 0x13d01affb +_surface.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/surface/_surface.cpython-38-darwin.so 0x13d02f000 - 0x13d037fff +errorchecker.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/OpenGL_accelerate/errorchecker.cpython-38-darwin.so 0x13d046000 - 0x13d070ffb +arraydatatype.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/OpenGL_accelerate/arraydatatype.cpython-38-darwin.so 0x13d094000 - 0x13d0c5fff +wrapper.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/OpenGL_accelerate/wrapper.cpython-38-darwin.so 0x13d0ee000 - 0x13d0f6ff7 +formathandler.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/OpenGL_accelerate/formathandler.cpython-38-darwin.so 0x13d106000 - 0x13d10dff3 +latebind.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/OpenGL_accelerate/latebind.cpython-38-darwin.so 0x13d11c000 - 0x13d135ff7 +vbo.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/OpenGL_accelerate/vbo.cpython-38-darwin.so 0x13e566000 - 0x13e56dfff +libqgif.dylib (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt5/Qt/plugins/imageformats/libqgif.dylib 0x13e576000 - 0x13e57bfff +libqico.dylib (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt5/Qt/plugins/imageformats/libqico.dylib 0x13e58e000 - 0x13e595ffb +libqicns.dylib (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt5/Qt/plugins/imageformats/libqicns.dylib 0x13e59f000 - 0x13e5a5ffb +libqmacheif.dylib (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt5/Qt/plugins/imageformats/libqmacheif.dylib 0x13e5af000 - 0x13e5b4fff +libqmacjp2.dylib (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt5/Qt/plugins/imageformats/libqmacjp2.dylib 0x13e5be000 - 0x13e5c3fff +libqsvg.dylib (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt5/Qt/plugins/imageformats/libqsvg.dylib 0x13e5cd000 - 0x13e5d1ff7 +libqtga.dylib (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt5/Qt/plugins/imageformats/libqtga.dylib 0x13e5da000 - 0x13e5deff3 +libqwbmp.dylib (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt5/Qt/plugins/imageformats/libqwbmp.dylib 0x13e5e7000 - 0x13e5e7fff +_mac_util.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/_mac_util.so 0x13e5ff000 - 0x13e690ff7 com.apple. AMDRadeonVADriver2 (3.10.15 - 3.1.0) /System/Library/Extensions/AMDRadeonVADriver2.bundle/Contents/MacOS/AMDRadeonVADriver2 0x13e70e000 - 0x13ffc5fff com.apple.AppleIntelKBLGraphicsVADriver (14.7.8 - 14.0.7) /System/Library/Extensions/AppleIntelKBLGraphicsVADriver.bundle/Contents/MacOS/AppleIntelKBLGraphicsVADriver 0x14015a000 - 0x14015bff7 +termios.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/termios.cpython-38-darwin.so 0x140166000 - 0x140168ff3 com.apple.AppleIntelCFLGraphicsVAME (14.7.8 - 14.0.7) /System/Library/Extensions/AppleIntelCFLGraphicsVAME.bundle/Contents/MacOS/AppleIntelCFLGraphicsVAME 0x140380000 - 0x140380fff +_uuid.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_uuid.cpython-38-darwin.so 0x14038d000 - 0x1403f1ffb +libqjpeg.dylib (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt5/Qt/plugins/imageformats/libqjpeg.dylib 0x14042c000 - 0x140460ff7 +QtSvg (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt5/Qt/lib/QtSvg.framework/Versions/5/QtSvg 0x140489000 - 0x1404efffb +libqtiff.dylib (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt5/Qt/plugins/imageformats/libqtiff.dylib 0x140503000 - 0x140599ff3 +libqwebp.dylib (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt5/Qt/plugins/imageformats/libqwebp.dylib 0x1405b1000 - 0x1406b5ff7 +unicodedata.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/unicodedata.cpython-38-darwin.so 0x140e01000 - 0x140e17ff7 com.apple.security.csparser (3.0 - 59306.140.5) /System/Library/Frameworks/Security.framework/PlugIns/csparser.bundle/Contents/MacOS/csparser 0x141035000 - 0x141046ffb +numpy_formathandler.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/OpenGL_accelerate/numpy_formathandler.cpython-38-darwin.so 0x1412e2000 - 0x1412e7ffb +nones_formathandler.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/OpenGL_accelerate/nones_formathandler.cpython-38-darwin.so 0x143a4b000 - 0x143a4cfff +libXau.6.dylib (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PIL/.dylibs/libXau.6.dylib 0x143a63000 - 0x143a69fff +_psutil_osx.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/psutil/_psutil_osx.cpython-38-darwin.so 0x143a74000 - 0x143a75ff3 +_psutil_posix.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/psutil/_psutil_posix.cpython-38-darwin.so 0x143c4a000 - 0x143c51ff7 +array.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/array.cpython-38-darwin.so 0x143eaf000 - 0x143eafff7 +_contextvars.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_contextvars.cpython-38-darwin.so 0x1441cb000 - 0x1441cbffb +_load_libs.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/pdb_lib/_load_libs.cpython-38-darwin.so 0x14452e000 - 0x144533ff7 +libpdbconnect.dylib (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/pdb_lib/lib/libpdbconnect.dylib 0x144640000 - 0x144644ff3 +_graphics.cpython-38-darwin.so (0) /opt/sbgrid/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/graphics/_graphics.cpython-38-darwin.so 0x145595000 - 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0x7fff6f749ff7 libsqlite3.dylib (308.5) /usr/lib/libsqlite3.dylib 0x7fff6f83d000 - 0x7fff6f86affb libssl.46.dylib (47.140.1) /usr/lib/libssl.46.dylib 0x7fff6f93f000 - 0x7fff6f999ff8 libusrtcp.dylib (1880.120.4) /usr/lib/libusrtcp.dylib 0x7fff6f99a000 - 0x7fff6f99dffb libutil.dylib (57) /usr/lib/libutil.dylib 0x7fff6f99e000 - 0x7fff6f9abff7 libxar.1.dylib (425.2) /usr/lib/libxar.1.dylib 0x7fff6f9b1000 - 0x7fff6fa93ff7 libxml2.2.dylib (33.4) /usr/lib/libxml2.2.dylib 0x7fff6fa97000 - 0x7fff6fabffff libxslt.1.dylib (16.9) /usr/lib/libxslt.1.dylib 0x7fff6fac0000 - 0x7fff6fad2ff3 libz.1.dylib (76) /usr/lib/libz.1.dylib 0x7fff70381000 - 0x7fff70386ff3 libcache.dylib (83) /usr/lib/system/libcache.dylib 0x7fff70387000 - 0x7fff70392fff libcommonCrypto.dylib (60165.120.1) /usr/lib/system/libcommonCrypto.dylib 0x7fff70393000 - 0x7fff7039afff libcompiler_rt.dylib (101.2) /usr/lib/system/libcompiler_rt.dylib 0x7fff7039b000 - 0x7fff703a4ff7 libcopyfile.dylib (166.40.1) /usr/lib/system/libcopyfile.dylib 0x7fff703a5000 - 0x7fff70437fdb libcorecrypto.dylib (866.140.1) /usr/lib/system/libcorecrypto.dylib 0x7fff70544000 - 0x7fff70584ff0 libdispatch.dylib (1173.100.2) /usr/lib/system/libdispatch.dylib 0x7fff70585000 - 0x7fff705bbfff libdyld.dylib (750.6) /usr/lib/system/libdyld.dylib 0x7fff705bc000 - 0x7fff705bcffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib 0x7fff705bd000 - 0x7fff705c9ff3 libkxld.dylib (6153.141.1) /usr/lib/system/libkxld.dylib 0x7fff705ca000 - 0x7fff705caff7 liblaunch.dylib (1738.140.1) /usr/lib/system/liblaunch.dylib 0x7fff705cb000 - 0x7fff705d0ff7 libmacho.dylib (959.0.1) /usr/lib/system/libmacho.dylib 0x7fff705d1000 - 0x7fff705d3ff3 libquarantine.dylib (110.40.3) /usr/lib/system/libquarantine.dylib 0x7fff705d4000 - 0x7fff705d5ff7 libremovefile.dylib (48) /usr/lib/system/libremovefile.dylib 0x7fff705d6000 - 0x7fff705edff3 libsystem_asl.dylib (377.60.2) /usr/lib/system/libsystem_asl.dylib 0x7fff705ee000 - 0x7fff705eeff7 libsystem_blocks.dylib (74) /usr/lib/system/libsystem_blocks.dylib 0x7fff705ef000 - 0x7fff70676fff libsystem_c.dylib (1353.100.2) /usr/lib/system/libsystem_c.dylib 0x7fff70677000 - 0x7fff7067affb libsystem_configuration.dylib (1061.141.1) /usr/lib/system/libsystem_configuration.dylib 0x7fff7067b000 - 0x7fff7067efff libsystem_coreservices.dylib (114) /usr/lib/system/libsystem_coreservices.dylib 0x7fff7067f000 - 0x7fff70687fff libsystem_darwin.dylib (1353.100.2) /usr/lib/system/libsystem_darwin.dylib 0x7fff70688000 - 0x7fff7068ffff libsystem_dnssd.dylib (1096.100.3) /usr/lib/system/libsystem_dnssd.dylib 0x7fff70690000 - 0x7fff70691ffb libsystem_featureflags.dylib (17) /usr/lib/system/libsystem_featureflags.dylib 0x7fff70692000 - 0x7fff706dfff7 libsystem_info.dylib (538) /usr/lib/system/libsystem_info.dylib 0x7fff706e0000 - 0x7fff7070cff7 libsystem_kernel.dylib (6153.141.1) /usr/lib/system/libsystem_kernel.dylib 0x7fff7070d000 - 0x7fff70754fff libsystem_m.dylib (3178) /usr/lib/system/libsystem_m.dylib 0x7fff70755000 - 0x7fff7077cfff libsystem_malloc.dylib (283.100.6) /usr/lib/system/libsystem_malloc.dylib 0x7fff7077d000 - 0x7fff7078affb libsystem_networkextension.dylib (1095.140.2) /usr/lib/system/libsystem_networkextension.dylib 0x7fff7078b000 - 0x7fff70794ff7 libsystem_notify.dylib (241.100.2) /usr/lib/system/libsystem_notify.dylib 0x7fff70795000 - 0x7fff7079dfef libsystem_platform.dylib (220.100.1) /usr/lib/system/libsystem_platform.dylib 0x7fff7079e000 - 0x7fff707a8fff libsystem_pthread.dylib (416.100.3) /usr/lib/system/libsystem_pthread.dylib 0x7fff707a9000 - 0x7fff707adff3 libsystem_sandbox.dylib (1217.140.4) /usr/lib/system/libsystem_sandbox.dylib 0x7fff707ae000 - 0x7fff707b0fff libsystem_secinit.dylib (62.100.2) /usr/lib/system/libsystem_secinit.dylib 0x7fff707b1000 - 0x7fff707b8ffb libsystem_symptoms.dylib (1238.120.1) /usr/lib/system/libsystem_symptoms.dylib 0x7fff707b9000 - 0x7fff707cfff2 libsystem_trace.dylib (1147.120) /usr/lib/system/libsystem_trace.dylib 0x7fff707d1000 - 0x7fff707d6ff7 libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib 0x7fff707d7000 - 0x7fff7080cffe libxpc.dylib (1738.140.1) /usr/lib/system/libxpc.dylib External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 37 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 5768253 thread_create: 0 thread_set_state: 0 VM Region Summary: ReadOnly portion of Libraries: Total=1.0G resident=0K(0%) swapped_out_or_unallocated=1.0G(100%) Writable regions: Total=3.5G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=3.5G(100%) VIRTUAL REGION REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Accelerate framework 1024K 8 Activity Tracing 256K 1 CG backing stores 1568K 4 CG image 364K 38 CoreAnimation 884K 74 CoreGraphics 8K 1 CoreImage 44K 7 CoreUI image data 1896K 28 Foundation 24K 2 Kernel Alloc Once 8K 1 MALLOC 1.4G 596 MALLOC guard page 48K 9 MALLOC_MEDIUM (reserved) 1.4G 16 reserved VM address space (unallocated) MALLOC_NANO (reserved) 256.0M 1 reserved VM address space (unallocated) Mach message 24K 4 OpenGL GLSL 384K 4 STACK GUARD 128K 32 Stack 144.2M 33 Stack Guard 56.0M 1 VM_ALLOCATE 190.8M 286 VM_ALLOCATE (reserved) 160.0M 3 reserved VM address space (unallocated) __DATA 66.8M 577 __DATA_CONST 132K 6 __FONT_DATA 4K 1 __GLSLBUILTINS 5176K 1 __LINKEDIT 482.5M 153 __OBJC_RO 32.3M 1 __OBJC_RW 1908K 2 __TEXT 576.4M 532 __UNICODE 564K 1 mapped file 437.5M 91 shared memory 2848K 25 =========== ======= ======= TOTAL 5.1G 2539 TOTAL, minus reserved VM space 3.3G 2539 Log: UCSF ChimeraX version: 1.2.5 (2021-05-24) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 ATI-3.10.15 OpenGL renderer: AMD Radeon Pro 5500M OpenGL Engine OpenGL vendor: ATI Technologies Inc.Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro16,1 Processor Name: 8-Core Intel Core i9 Processor Speed: 2.3 GHz Number of Processors: 1 Total Number of Cores: 8 L2 Cache (per Core): 256 KB L3 Cache: 16 MB Hyper-Threading Technology: Enabled Memory: 32 GB Boot ROM Version: 1037.147.1.0.0 (iBridge: 17.16.16065.0.0,0) Software: System Software Overview: System Version: macOS 10.15.6 (19G73) Kernel Version: Darwin 19.6.0 Time since boot: 29 days 15:59 Graphics/Displays: Intel UHD Graphics 630: Chipset Model: Intel UHD Graphics 630 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x3e9b Revision ID: 0x0002 Automatic Graphics Switching: Supported gMux Version: 5.0.0 Metal: Supported, feature set macOS GPUFamily2 v1 AMD Radeon Pro 5500M: Chipset Model: AMD Radeon Pro 5500M Type: GPU Bus: PCIe PCIe Lane Width: x8 VRAM (Total): 4 GB Vendor: AMD (0x1002) Device ID: 0x7340 Revision ID: 0x0040 ROM Revision: 113-D3220E-190 VBIOS Version: 113-D32206U1-019 Option ROM Version: 113-D32206U1-019 EFI Driver Version: 01.01.190 Automatic Graphics Switching: Supported gMux Version: 5.0.0 Metal: Supported, feature set macOS GPUFamily2 v1 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 3072 x 1920 Retina Framebuffer Depth: 24-Bit Color (ARGB8888) Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal DELL U2412M: Resolution: 1920 x 1200 (WUXGA - Widescreen Ultra eXtended Graphics Array) UI Looks like: 1920 x 1200 @ 60 Hz Framebuffer Depth: 30-Bit Color (ARGB2101010) Display Serial Number: YMYH14BR3UKL Main Display: Yes Mirror: Off Online: Yes Rotation: Supported Adapter Type: DVI or HDMI Automatically Adjust Brightness: No Locale: (None, 'UTF-8') PyQt5 5.15.2, Qt 5.15.2 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.2 Babel: 2.9.1 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2020.12.5 cftime: 1.5.0 chardet: 3.0.4 ChimeraX-AddCharge: 1.0.1 ChimeraX-AddH: 2.1.6 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.13.2 ChimeraX-AtomicLibrary: 3.1.3 ChimeraX-AtomSearch: 2.0 ChimeraX-AtomSearchLibrary: 1.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 1.1 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.5.2 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.1 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.1 ChimeraX-Clipper: 0.16.1 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.2.1 ChimeraX-CommandLine: 1.1.4 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.2.5 ChimeraX-CoreFormats: 1.0 ChimeraX-coulombic: 1.1.1 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.1 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1.3 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.0 ChimeraX-Hbonds: 2.1 ChimeraX-Help: 1.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.0 ChimeraX-ImageFormats: 1.1 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ISOLDE: 1.2.2 ChimeraX-Label: 1.0 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.0.2 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.0 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 1.2.1 ChimeraX-MDcrds: 2.2 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.3 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.0.1 ChimeraX-ModelPanel: 1.0.1 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.1 ChimeraX-OpenCommand: 1.5 ChimeraX-PDB: 2.4.1 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.1 ChimeraX-PDBMatrices: 1.0 ChimeraX-Phenix: 0.3 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0.1 ChimeraX-PubChem: 2.0.1 ChimeraX-ReadPbonds: 1.0 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.4 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SeqView: 2.3 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.0 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.0.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.3.1 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.0.1 ChimeraX-ToolshedUtils: 1.2 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.7.6 ChimeraX-uniprot: 2.1 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.3 comtypes: 1.1.7 cxservices: 1.0 cycler: 0.10.0 Cython: 0.29.21 decorator: 5.0.9 distlib: 0.3.1 docutils: 0.16 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 2.10.0 html2text: 2020.1.16 idna: 2.10 ihm: 0.17 imagecodecs: 2020.5.30 imagesize: 1.2.0 ipykernel: 5.3.4 ipython: 7.18.1 ipython-genutils: 0.2.0 jedi: 0.17.2 Jinja2: 2.11.2 jupyter-client: 6.1.7 jupyter-core: 4.7.1 kiwisolver: 1.3.1 line-profiler: 2.1.2 lxml: 4.6.2 lz4: 3.1.0 MarkupSafe: 2.0.1 matplotlib: 3.3.2 matplotlib-inline: 0.1.2 msgpack: 1.0.0 netCDF4: 1.5.4 networkx: 2.5 numexpr: 2.7.3 numpy: 1.19.2 numpydoc: 1.1.0 openvr: 1.14.1501 packaging: 20.9 ParmEd: 3.2.0 parso: 0.7.1 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 7.2.0 pip: 21.0.1 pkginfo: 1.5.0.1 prompt-toolkit: 3.0.18 psutil: 5.7.2 ptyprocess: 0.7.0 pycollada: 0.7.1 pydicom: 2.0.0 Pygments: 2.7.1 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 2.4.7 PyQt5-commercial: 5.15.2 PyQt5-sip: 12.8.1 PyQtWebEngine-commercial: 5.15.2 python-dateutil: 2.8.1 pytz: 2021.1 pyzmq: 22.0.3 qtconsole: 4.7.7 QtPy: 1.9.0 RandomWords: 0.3.0 requests: 2.24.0 scipy: 1.5.2 setuptools: 50.3.2 sfftk-rw: 0.6.7.dev1 six: 1.15.0 snowballstemmer: 2.1.0 sortedcontainers: 2.2.2 Sphinx: 3.2.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-jurko: 0.6 tables: 3.6.1 tifffile: 2020.9.3 tinyarray: 1.2.3 tornado: 6.1 traitlets: 5.0.5 urllib3: 1.25.11 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.36.0 wheel-filename: 1.3.0 }}} " defect closed normal Command Line can't reproduce Greg Couch all ChimeraX