id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 5777 QOpenGLFramebufferObject: Framebuffer incomplete attachment chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: Windows-10-10.0.19043 ChimeraX Version: 1.3rc202112040407 (2021-12-04 04:07:47 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Windows fatal exception: access violation Thread 0x00001c3c (most recent call first): File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\multiprocessing\pool.py"", line 576 in _handle_results File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x00005434 (most recent call first): File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\multiprocessing\pool.py"", line 528 in _handle_tasks File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x00002980 (most recent call first): File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\multiprocessing\connection.py"", line 816 in _exhaustive_wait File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\multiprocessing\connection.py"", line 884 in wait File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\multiprocessing\pool.py"", line 499 in _wait_for_updates File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\multiprocessing\pool.py"", line 519 in _handle_workers File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x0000488c (most recent call first): File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\multiprocessing\pool.py"", line 114 in worker File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x00004f90 (most recent call first): File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\multiprocessing\pool.py"", line 114 in worker File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x00001e64 (most recent call first): File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\multiprocessing\pool.py"", line 114 in worker File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x00004298 (most recent call first): File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\multiprocessing\pool.py"", line 114 in worker File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x00003488 (most recent call first): File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\multiprocessing\pool.py"", line 114 in worker File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x00005c6c (most recent call first): File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\multiprocessing\pool.py"", line 114 in worker File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x00000ed4 (most recent call first): File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\multiprocessing\pool.py"", line 114 in worker File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x000044b8 (most recent call first): File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\multiprocessing\pool.py"", line 114 in worker File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\threading.py"", line 930 in _bootstrap Current thread 0x00006700 (most recent call first): File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\site-packages\chimerax\ui\gui.py"", line 301 in event_loop File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\site-packages\ChimeraX_main.py"", line 867 in init File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\site-packages\ChimeraX_main.py"", line 1018 in File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\runpy.py"", line 87 in _run_code File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\runpy.py"", line 197 in _run_module_as_main ===== Log before crash start ===== UCSF ChimeraX version: 1.3rc202112040407 (2021-12-04) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX QOpenGLFramebufferObject: Framebuffer incomplete attachment. > open ""C:/Users/Admin/Documents/Year 3/In-Silico project/Homology model/Draft > 2/model 1 .cxs"" Unable to restore session, resetting. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\site- packages\chimerax\core\session.py"", line 725, in restore obj = sm.restore_snapshot(self, data) File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\site- packages\chimerax\blastprotein\ui\tool.py"", line 245, in restore_snapshot return BlastProteinTool.from_snapshot(session, data) File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\site- packages\chimerax\blastprotein\ui\tool.py"", line 221, in from_snapshot tmp = cls( TypeError: __init__() missing 1 required positional argument: 'str' opened ChimeraX session > open ""C:/Users/Admin/Documents/Year 3/In-Silico project/Homology model/Draft > 2/model 1 .cxs"" opened ChimeraX session An error occurred in drawing the scene. Redrawing graphics is now stopped to avoid a continuous stream of error messages. To restart graphics use the command ""graphics restart"" after changing the settings that caused the error. GLError( err = 1285, description = b'out of memory', baseOperation = glBufferData, pyArgs = ( 34963, 3135264, array([[ 1, 0, 11], [ 1, 11, 12], [ 2, 1, 12], ..., ..., GL_STATIC_DRAW, ), cArgs = ( 34963, 3135264, array([[ 1, 0, 11], [ 1, 11, 12], [ 2, 1, 12], ..., ..., GL_STATIC_DRAW, ), cArguments = ( 34963, 3135264, array([[ 1, 0, 11], [ 1, 11, 12], [ 2, 1, 12], ..., ..., GL_STATIC_DRAW, ) ) Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\site- packages\chimerax\core\updateloop.py"", line 73, in draw_new_frame view.draw(check_for_changes = False) File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\site- packages\chimerax\graphics\view.py"", line 165, in draw self._draw_scene(camera, drawings) File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\site- packages\chimerax\graphics\view.py"", line 235, in _draw_scene draw_opaque(r, opaque_drawings) File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 1499, in draw_opaque _draw_multiple(drawings, renderer, Drawing.OPAQUE_DRAW_PASS) File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 1512, in _draw_multiple d.draw(renderer, draw_pass) File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 752, in draw self.draw_self(renderer, draw_pass) File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 759, in draw_self self._draw_geometry(renderer, opaque_only = any_transp) File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 786, in _draw_geometry ds.activate_bindings(renderer) File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 1859, in activate_bindings self.update_buffers() File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\site- packages\chimerax\graphics\drawing.py"", line 1847, in update_buffers b.update_buffer_data(data) File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 2674, in update_buffer_data GL.glBufferData(btype, size, d, GL.GL_STATIC_DRAW) File ""src/latebind.pyx"", line 51, in OpenGL_accelerate.latebind.Curry.__call__ File ""C:\Program Files\ChimeraX 1.3rc202112040407\bin\lib\site- packages\OpenGL\GL\VERSION\GL_1_5.py"", line 89, in glBufferData return baseOperation( target, size, data, usage ) File ""src/latebind.pyx"", line 39, in OpenGL_accelerate.latebind.LateBind.__call__ File ""src/wrapper.pyx"", line 318, in OpenGL_accelerate.wrapper.Wrapper.__call__ File ""src/wrapper.pyx"", line 311, in OpenGL_accelerate.wrapper.Wrapper.__call__ File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1285, description = b'out of memory', baseOperation = glBufferData, pyArgs = ( 34963, 3135264, array([[ 1, 0, 11], [ 1, 11, 12], [ 2, 1, 12], ..., ..., GL_STATIC_DRAW, ), cArgs = ( 34963, 3135264, array([[ 1, 0, 11], [ 1, 11, 12], [ 2, 1, 12], ..., ..., GL_STATIC_DRAW, ), cArguments = ( 34963, 3135264, array([[ 1, 0, 11], [ 1, 11, 12], [ 2, 1, 12], ..., ..., GL_STATIC_DRAW, ) ) createDIB: CreateDIBSection failed (1920x1051, format: 6) ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.3rc202112040407 (2021-12-04) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 3.3.14761 Core Profile Forward-Compatible Context 21.30.23.01 30.0.13023.1012 OpenGL renderer: AMD Radeon(TM) Vega 8 Graphics OpenGL vendor: ATI Technologies Inc. Manufacturer: Acer Model: Aspire A315-41 OS: Microsoft Windows 10 Home (Build 19043) Memory: 20,296,843,264 MaxProcessMemory: 137,438,953,344 CPU: 8 AMD Ryzen 5 2500U with Radeon Vega Mobile Gfx OSLanguage: en-GB Locale: ('en_GB', 'cp1252') PyQt5 5.15.2, Qt 5.15.2 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 Babel: 2.9.1 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2021.10.8 cftime: 1.5.1.1 charset-normalizer: 2.0.9 ChimeraX-AddCharge: 1.2.2 ChimeraX-AddH: 2.1.11 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.2.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.31 ChimeraX-AtomicLibrary: 4.2 ChimeraX-AtomSearch: 2.0 ChimeraX-AtomSearchLibrary: 1.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.0 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.6.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.2 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.2 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5 ChimeraX-CommandLine: 1.1.5 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.3rc202112040407 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1.5 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.1.2 ChimeraX-Help: 1.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0 ChimeraX-Label: 1.1 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.4 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 2.0.4 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.4 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.2.6 ChimeraX-ModelPanel: 1.2.1 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.2 ChimeraX-OpenCommand: 1.7 ChimeraX-PDB: 2.6.5 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.4.6 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.1 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.6.1 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1 ChimeraX-ToolshedUtils: 1.2 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.13.7 ChimeraX-uniprot: 2.2 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.0.1 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.4 comtypes: 1.1.10 cxservices: 1.1 cycler: 0.11.0 Cython: 0.29.24 decorator: 5.1.0 docutils: 0.17.1 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 3.6.0 html2text: 2020.1.16 idna: 3.3 ihm: 0.21 imagecodecs: 2021.4.28 imagesize: 1.3.0 ipykernel: 5.5.5 ipython: 7.23.1 ipython-genutils: 0.2.0 jedi: 0.18.0 Jinja2: 3.0.1 jupyter-client: 6.1.12 jupyter-core: 4.9.1 kiwisolver: 1.3.2 lxml: 4.6.3 lz4: 3.1.3 MarkupSafe: 2.0.1 matplotlib: 3.4.3 matplotlib-inline: 0.1.3 msgpack: 1.0.2 netCDF4: 1.5.7 networkx: 2.6.3 numexpr: 2.8.0 numpy: 1.21.2 openvr: 1.16.801 packaging: 21.3 ParmEd: 3.2.0 parso: 0.8.3 pickleshare: 0.7.5 Pillow: 8.3.2 pip: 21.2.4 pkginfo: 1.7.1 prompt-toolkit: 3.0.23 psutil: 5.8.0 pycollada: 0.7.1 pydicom: 2.1.2 Pygments: 2.10.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.6 PyQt5-commercial: 5.15.2 PyQt5-sip: 12.8.1 PyQtWebEngine-commercial: 5.15.2 python-dateutil: 2.8.2 pytz: 2021.3 pywin32: 228 pyzmq: 22.3.0 qtconsole: 5.1.1 QtPy: 1.11.3 RandomWords: 0.3.0 requests: 2.26.0 scipy: 1.7.1 setuptools: 57.5.0 sfftk-rw: 0.7.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 4.2.0 sphinx-autodoc-typehints: 1.12.0 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-jurko: 0.6 tables: 3.6.1 tifffile: 2021.4.8 tinyarray: 1.2.3 tornado: 6.1 traitlets: 5.1.1 urllib3: 1.26.7 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.37.0 wheel-filename: 1.3.0 WMI: 1.5.1 }}} " defect closed normal Graphics nonchimerax all ChimeraX