id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 5749 Fatal Qt error during app initialization chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-10.15.7-x86_64-i386-64bit ChimeraX Version: 1.4.dev202112041237 (2021-12-04 12:37:49 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Process: ChimeraX [68631] Path: /Users/USER/Desktop/*/ChimeraX_Daily.app/Contents/MacOS/ChimeraX Identifier: edu.ucsf.cgl.ChimeraX Version: 1.4.0 (1.4.0.0) Code Type: X86-64 (Native) Parent Process: ??? [1] Responsible: ChimeraX [68631] User ID: 501 Date/Time: 2021-12-09 15:04:43.659 +0100 OS Version: Mac OS X 10.15.7 (19H114) Report Version: 12 Anonymous UUID: 047EB95A-965B-CD01-EA9B-8C6DC2AEFBC3 Sleep/Wake UUID: 470FE24A-2066-45BD-B9B8-C96F84E5311B Time Awake Since Boot: 1100000 seconds Time Since Wake: 6800 seconds System Integrity Protection: enabled Crashed Thread: 0 Dispatch queue: com.apple.main-thread Exception Type: EXC_CRASH (SIGABRT) Exception Codes: 0x0000000000000000, 0x0000000000000000 Exception Note: EXC_CORPSE_NOTIFY Application Specific Information: abort() called Thread 0 Crashed:: Dispatch queue: com.apple.main-thread 0 libsystem_kernel.dylib 0x00007fff7356e33a __pthread_kill + 10 1 libsystem_pthread.dylib 0x00007fff7362ae60 pthread_kill + 430 2 libsystem_c.dylib 0x00007fff7348593e raise + 26 3 libsystem_platform.dylib 0x00007fff7361f5fd _sigtramp + 29 4 ??? 000000000000000000 0 + 0 5 libsystem_c.dylib 0x00007fff734f5808 abort + 120 6 QtCore 0x0000000109833529 qt_message_fatal(QtMsgType, QMessageLogContext const&, QString const&) + 9 7 QtCore 0x0000000109834c74 QMessageLogger::fatal(char const*, ...) const + 202 8 QtGui 0x000000010ed163d9 QGuiApplicationPrivate::createPlatformIntegration() + 7193 9 QtGui 0x000000010ed163fb QGuiApplicationPrivate::createEventDispatcher() + 27 10 QtCore 0x0000000109a131af QCoreApplicationPrivate::init() + 1599 11 QtGui 0x000000010ed10b59 QGuiApplicationPrivate::init() + 57 12 QtWidgets 0x000000010a4ebada QApplicationPrivate::init() + 26 13 QtWidgets.abi3.so 0x000000010a0a537b init_type_QApplication(_sipSimpleWrapper*, _object*, _object*, _object**, _object**, _object**) + 171 14 sip.cpython-39-darwin.so 0x0000000109f31ceb sipSimpleWrapper_init + 203 15 org.python.python 0x000000010231e3ec wrap_init + 12 16 org.python.python 0x00000001022cc759 wrapperdescr_call + 121 17 org.python.python 0x00000001022c417d _PyObject_MakeTpCall + 365 18 org.python.python 0x000000010239c61c call_function + 876 19 org.python.python 0x0000000102399ab3 _PyEval_EvalFrameDefault + 25219 20 org.python.python 0x00000001022c4948 function_code_fastcall + 104 21 org.python.python 0x00000001022c3fd5 _PyObject_FastCallDictTstate + 293 22 org.python.python 0x00000001022c4bb8 _PyObject_Call_Prepend + 152 23 org.python.python 0x000000010231e325 slot_tp_init + 165 24 org.python.python 0x0000000102319879 type_call + 345 25 org.python.python 0x00000001022c417d _PyObject_MakeTpCall + 365 26 org.python.python 0x000000010239c61c call_function + 876 27 org.python.python 0x0000000102399ab3 _PyEval_EvalFrameDefault + 25219 28 org.python.python 0x000000010239d283 _PyEval_EvalCode + 2611 29 org.python.python 0x00000001022c48d1 _PyFunction_Vectorcall + 289 30 org.python.python 0x000000010239c58c call_function + 732 31 org.python.python 0x0000000102399b4b _PyEval_EvalFrameDefault + 25371 32 org.python.python 0x000000010239d283 _PyEval_EvalCode + 2611 33 org.python.python 0x000000010239370b PyEval_EvalCode + 139 34 org.python.python 0x0000000102390592 builtin_exec + 626 35 org.python.python 0x000000010230286a cfunction_vectorcall_FASTCALL + 218 36 org.python.python 0x000000010239c58c call_function + 732 37 org.python.python 0x0000000102399b4b _PyEval_EvalFrameDefault + 25371 38 org.python.python 0x000000010239d283 _PyEval_EvalCode + 2611 39 org.python.python 0x00000001022c48d1 _PyFunction_Vectorcall + 289 40 org.python.python 0x000000010239c58c call_function + 732 41 org.python.python 0x0000000102399b4b _PyEval_EvalFrameDefault + 25371 42 org.python.python 0x000000010239d283 _PyEval_EvalCode + 2611 43 org.python.python 0x00000001022c48d1 _PyFunction_Vectorcall + 289 44 org.python.python 0x0000000102402e20 pymain_run_module + 208 45 org.python.python 0x0000000102402537 Py_RunMain + 1431 46 org.python.python 0x0000000102402b3f pymain_main + 223 47 org.python.python 0x0000000102402a4b Py_Main + 43 48 edu.ucsf.cgl.ChimeraX 0x000000010227edc8 main + 120 49 libdyld.dylib 0x00007fff73426cc9 start + 1 Thread 1: 0 libsystem_kernel.dylib 0x00007fff7356a882 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff7362b425 _pthread_cond_wait + 698 2 libopenblas.0.dylib 0x0000000102f47a9f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff7362b109 _pthread_start + 148 4 libsystem_pthread.dylib 0x00007fff73626b8b thread_start + 15 Thread 2: 0 libsystem_pthread.dylib 0x00007fff73626b68 start_wqthread + 0 Thread 3: 0 libsystem_pthread.dylib 0x00007fff73626b68 start_wqthread + 0 Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000000000000 rbx: 0x000000010b157dc0 rcx: 0x00007fd909055a58 rdx: 0x0000000000000000 rdi: 0x0000000000000307 rsi: 0x0000000000000006 rbp: 0x00007fd909055a80 rsp: 0x00007fd909055a58 r8: 0x00007fd909055f48 r9: 0xdcae20b23d2df67a r10: 0x000000010b157dc0 r11: 0x0000000000000246 r12: 0x0000000000000307 r13: 0x0000000109d9d658 r14: 0x0000000000000006 r15: 0x0000000000000016 rip: 0x00007fff7356e33a rfl: 0x0000000000000246 cr2: 0x0000000109801000 Logical CPU: 0 Error Code: 0x02000148 Trap Number: 133 Binary Images: 0x10227e000 - 0x10227eff3 +edu.ucsf.cgl.ChimeraX (1.4.0 - 1.4.0.0) /Users/USER/Desktop/*/ChimeraX_Daily.app/Contents/MacOS/ChimeraX 0x102288000 - 0x1024ecfff +org.python.python (3.9.6, [c] 2001-2019 Python Software Foundation. - 3.9.6) /Users/USER/Desktop/*/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/Python 0x10264a000 - 0x10264cfff +_heapq.cpython-39-darwin.so (0) /Users/USER/Desktop/*/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_heapq.cpython-39-darwin.so 0x102654000 - 0x102658ff7 +binascii.cpython-39-darwin.so (0) /Users/USER/Desktop/*/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/binascii.cpython-39-darwin.so 0x102662000 - 0x102667fff +zlib.cpython-39-darwin.so (0) 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/System/Library/PrivateFrameworks/SkyLight.framework/Versions/A/SkyLight 0x7fff69154000 - 0x7fff69162ffb com.apple.SpeechRecognitionCore (6.0.91.2 - 6.0.91.2) /System/Library/PrivateFrameworks/SpeechRecognitionCore.framework/Versions/A/SpeechRecognitionCore 0x7fff69996000 - 0x7fff6999fff7 com.apple.SymptomDiagnosticReporter (1.0 - 1238.120.2) /System/Library/PrivateFrameworks/SymptomDiagnosticReporter.framework/Versions/A/SymptomDiagnosticReporter 0x7fff69c56000 - 0x7fff69c66ff3 com.apple.TCC (1.0 - 1) /System/Library/PrivateFrameworks/TCC.framework/Versions/A/TCC 0x7fff6a18b000 - 0x7fff6a251ff0 com.apple.TextureIO (3.10.9 - 3.10.9) /System/Library/PrivateFrameworks/TextureIO.framework/Versions/A/TextureIO 0x7fff6a421000 - 0x7fff6a679ff0 com.apple.UIFoundation (1.0 - 662) /System/Library/PrivateFrameworks/UIFoundation.framework/Versions/A/UIFoundation 0x7fff6a710000 - 0x7fff6a716ffe com.apple.URLFormatting (119 - 119.18) /System/Library/PrivateFrameworks/URLFormatting.framework/Versions/A/URLFormatting 0x7fff6b2ef000 - 0x7fff6b30fffc com.apple.UserManagement (1.0 - 1) /System/Library/PrivateFrameworks/UserManagement.framework/Versions/A/UserManagement 0x7fff6c0bb000 - 0x7fff6c1a6ff2 com.apple.ViewBridge (467 - 467) /System/Library/PrivateFrameworks/ViewBridge.framework/Versions/A/ViewBridge 0x7fff6c34c000 - 0x7fff6c34dfff com.apple.WatchdogClient.framework (1.0 - 67.120.2) /System/Library/PrivateFrameworks/WatchdogClient.framework/Versions/A/WatchdogClient 0x7fff6cf7d000 - 0x7fff6cf80ffa com.apple.dt.XCTTargetBootstrap (1.0 - 16091) /System/Library/PrivateFrameworks/XCTTargetBootstrap.framework/Versions/A/XCTTargetBootstrap 0x7fff6cffa000 - 0x7fff6d008ff5 com.apple.audio.caulk (1.0 - 32.3) /System/Library/PrivateFrameworks/caulk.framework/Versions/A/caulk 0x7fff6d34a000 - 0x7fff6d34cff3 com.apple.loginsupport (1.0 - 1) /System/Library/PrivateFrameworks/login.framework/Versions/A/Frameworks/loginsupport.framework/Versions/A/loginsupport 0x7fff6d392000 - 0x7fff6d39effd com.apple.perfdata (1.0 - 51.100.6) /System/Library/PrivateFrameworks/perfdata.framework/Versions/A/perfdata 0x7fff6fe23000 - 0x7fff6fe2fff9 libAudioStatistics.dylib (1104.95) /usr/lib/libAudioStatistics.dylib 0x7fff6fe30000 - 0x7fff6fe63ffa libAudioToolboxUtility.dylib (1104.95) /usr/lib/libAudioToolboxUtility.dylib 0x7fff6fe6a000 - 0x7fff6fe9efff libCRFSuite.dylib (48) /usr/lib/libCRFSuite.dylib 0x7fff6fea1000 - 0x7fff6feabfff libChineseTokenizer.dylib (34) /usr/lib/libChineseTokenizer.dylib 0x7fff6feac000 - 0x7fff6ff34fff libCoreStorage.dylib (551) /usr/lib/libCoreStorage.dylib 0x7fff6ff37000 - 0x7fff6ff39ff7 libDiagnosticMessagesClient.dylib (112) /usr/lib/libDiagnosticMessagesClient.dylib 0x7fff6ff7f000 - 0x7fff70136ffb libFosl_dynamic.dylib (100.4) /usr/lib/libFosl_dynamic.dylib 0x7fff7015d000 - 0x7fff70163ff3 libIOReport.dylib (54) /usr/lib/libIOReport.dylib 0x7fff70245000 - 0x7fff7024cfff libMatch.1.dylib (36) /usr/lib/libMatch.1.dylib 0x7fff7027b000 - 0x7fff7029bff7 libMobileGestalt.dylib (826.140.5) /usr/lib/libMobileGestalt.dylib 0x7fff7031b000 - 0x7fff703f8ff7 libSMC.dylib (20) /usr/lib/libSMC.dylib 0x7fff7040d000 - 0x7fff7040efff libSystem.B.dylib (1281.100.1) /usr/lib/libSystem.B.dylib 0x7fff7040f000 - 0x7fff7049aff7 libTelephonyUtilDynamic.dylib (5017.1) /usr/lib/libTelephonyUtilDynamic.dylib 0x7fff7049b000 - 0x7fff7049cfff libThaiTokenizer.dylib (3) /usr/lib/libThaiTokenizer.dylib 0x7fff704b4000 - 0x7fff704cafff libapple_nghttp2.dylib (1.39.2) /usr/lib/libapple_nghttp2.dylib 0x7fff704ff000 - 0x7fff70571ff7 libarchive.2.dylib (72.140.2) /usr/lib/libarchive.2.dylib 0x7fff70572000 - 0x7fff7060bfe5 libate.dylib (3.0.1) /usr/lib/libate.dylib 0x7fff7060f000 - 0x7fff7060fff3 libauto.dylib (187) /usr/lib/libauto.dylib 0x7fff706d5000 - 0x7fff706e5ffb libbsm.0.dylib (60.100.1) /usr/lib/libbsm.0.dylib 0x7fff706e6000 - 0x7fff706f2fff libbz2.1.0.dylib (44) /usr/lib/libbz2.1.0.dylib 0x7fff706f3000 - 0x7fff70745fff libc++.1.dylib (902.1) /usr/lib/libc++.1.dylib 0x7fff70746000 - 0x7fff7075bffb libc++abi.dylib (902) /usr/lib/libc++abi.dylib 0x7fff7075c000 - 0x7fff7075cfff libcharset.1.dylib (59) /usr/lib/libcharset.1.dylib 0x7fff7075d000 - 0x7fff7076efff libcmph.dylib (8) /usr/lib/libcmph.dylib 0x7fff7076f000 - 0x7fff70786fd7 libcompression.dylib (87) /usr/lib/libcompression.dylib 0x7fff70a60000 - 0x7fff70a76ff7 libcoretls.dylib (167) /usr/lib/libcoretls.dylib 0x7fff70a77000 - 0x7fff70a78fff libcoretls_cfhelpers.dylib (167) /usr/lib/libcoretls_cfhelpers.dylib 0x7fff71022000 - 0x7fff7102dfff libcsfde.dylib (551) /usr/lib/libcsfde.dylib 0x7fff71035000 - 0x7fff71094ff7 libcups.2.dylib (483.7) /usr/lib/libcups.2.dylib 0x7fff7119e000 - 0x7fff7119efff libenergytrace.dylib (21) /usr/lib/libenergytrace.dylib 0x7fff7119f000 - 0x7fff711b7fff libexpat.1.dylib (19.60.2) /usr/lib/libexpat.1.dylib 0x7fff711c5000 - 0x7fff711c7fff libfakelink.dylib (149.1) /usr/lib/libfakelink.dylib 0x7fff711c8000 - 0x7fff711cdf57 libffi.dylib (26) /usr/lib/libffi.dylib 0x7fff711d6000 - 0x7fff711dbfff libgermantok.dylib (24) /usr/lib/libgermantok.dylib 0x7fff711dc000 - 0x7fff711e5ff7 libheimdal-asn1.dylib (564.140.1) /usr/lib/libheimdal-asn1.dylib 0x7fff711e6000 - 0x7fff712d6fff libiconv.2.dylib (59) /usr/lib/libiconv.2.dylib 0x7fff712d7000 - 0x7fff7152efff libicucore.A.dylib (64260.0.1) /usr/lib/libicucore.A.dylib 0x7fff71546000 - 0x7fff71547fff liblangid.dylib (133) /usr/lib/liblangid.dylib 0x7fff71548000 - 0x7fff71560ff3 liblzma.5.dylib (16) /usr/lib/liblzma.5.dylib 0x7fff71578000 - 0x7fff7161fff7 libmecab.dylib (883.11) /usr/lib/libmecab.dylib 0x7fff71620000 - 0x7fff71882ff1 libmecabra.dylib (883.11) /usr/lib/libmecabra.dylib 0x7fff71bef000 - 0x7fff71c1efff libncurses.5.4.dylib (57) /usr/lib/libncurses.5.4.dylib 0x7fff71d4e000 - 0x7fff721caff5 libnetwork.dylib (1880.120.4) /usr/lib/libnetwork.dylib 0x7fff721cb000 - 0x7fff721e2fff libnetworkextension.dylib (1095.140.2) /usr/lib/libnetworkextension.dylib 0x7fff7226b000 - 0x7fff7229efde libobjc.A.dylib (787.1) /usr/lib/libobjc.A.dylib 0x7fff722b1000 - 0x7fff722b5fff libpam.2.dylib (25.100.1) /usr/lib/libpam.2.dylib 0x7fff722b8000 - 0x7fff722eeff7 libpcap.A.dylib (89.120.1) /usr/lib/libpcap.A.dylib 0x7fff7232e000 - 0x7fff7233cff9 libperfcheck.dylib (37.100.2) /usr/lib/libperfcheck.dylib 0x7fff7233d000 - 0x7fff72340ff3 libpmenergy.dylib (214.120.1) /usr/lib/libpmenergy.dylib 0x7fff72341000 - 0x7fff72343fff libpmsample.dylib (214.120.1) /usr/lib/libpmsample.dylib 0x7fff72372000 - 0x7fff7238afff libresolv.9.dylib (67.40.1) /usr/lib/libresolv.9.dylib 0x7fff7238c000 - 0x7fff723d0ff7 libsandbox.1.dylib (1217.141.2) /usr/lib/libsandbox.1.dylib 0x7fff723e4000 - 0x7fff723e5ff7 libspindump.dylib (281.3) /usr/lib/libspindump.dylib 0x7fff723e6000 - 0x7fff725d0ff7 libsqlite3.dylib (308.5) /usr/lib/libsqlite3.dylib 0x7fff72821000 - 0x7fff72824ffb libutil.dylib (57) /usr/lib/libutil.dylib 0x7fff72825000 - 0x7fff72832ff7 libxar.1.dylib (425.2) /usr/lib/libxar.1.dylib 0x7fff72838000 - 0x7fff7291afff libxml2.2.dylib (33.7) /usr/lib/libxml2.2.dylib 0x7fff7291e000 - 0x7fff72946fff libxslt.1.dylib (16.9) /usr/lib/libxslt.1.dylib 0x7fff72947000 - 0x7fff72959ff3 libz.1.dylib (76) /usr/lib/libz.1.dylib 0x7fff73208000 - 0x7fff7320dff3 libcache.dylib (83) /usr/lib/system/libcache.dylib 0x7fff7320e000 - 0x7fff73219fff libcommonCrypto.dylib (60165.120.1) /usr/lib/system/libcommonCrypto.dylib 0x7fff7321a000 - 0x7fff73221fff libcompiler_rt.dylib (101.2) /usr/lib/system/libcompiler_rt.dylib 0x7fff73222000 - 0x7fff7322bff7 libcopyfile.dylib (166.40.1) /usr/lib/system/libcopyfile.dylib 0x7fff7322c000 - 0x7fff732befdb libcorecrypto.dylib (866.140.1) /usr/lib/system/libcorecrypto.dylib 0x7fff733cb000 - 0x7fff7340bff0 libdispatch.dylib (1173.100.2) /usr/lib/system/libdispatch.dylib 0x7fff7340c000 - 0x7fff73442fff libdyld.dylib (750.6) /usr/lib/system/libdyld.dylib 0x7fff73443000 - 0x7fff73443ffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib 0x7fff73444000 - 0x7fff73450ff3 libkxld.dylib (6153.141.10) /usr/lib/system/libkxld.dylib 0x7fff73451000 - 0x7fff73451ff7 liblaunch.dylib (1738.140.2) /usr/lib/system/liblaunch.dylib 0x7fff73452000 - 0x7fff73457ff7 libmacho.dylib (959.0.1) /usr/lib/system/libmacho.dylib 0x7fff73458000 - 0x7fff7345aff3 libquarantine.dylib (110.40.3) /usr/lib/system/libquarantine.dylib 0x7fff7345b000 - 0x7fff7345cff7 libremovefile.dylib (48) /usr/lib/system/libremovefile.dylib 0x7fff7345d000 - 0x7fff73474ff3 libsystem_asl.dylib (377.60.2) /usr/lib/system/libsystem_asl.dylib 0x7fff73475000 - 0x7fff73475ff7 libsystem_blocks.dylib (74) /usr/lib/system/libsystem_blocks.dylib 0x7fff73476000 - 0x7fff734fdfff libsystem_c.dylib (1353.100.2) /usr/lib/system/libsystem_c.dylib 0x7fff734fe000 - 0x7fff73501ffb libsystem_configuration.dylib (1061.141.1) /usr/lib/system/libsystem_configuration.dylib 0x7fff73502000 - 0x7fff73505fff libsystem_coreservices.dylib (114) /usr/lib/system/libsystem_coreservices.dylib 0x7fff73506000 - 0x7fff7350efff libsystem_darwin.dylib (1353.100.2) /usr/lib/system/libsystem_darwin.dylib 0x7fff7350f000 - 0x7fff73516fff libsystem_dnssd.dylib (1096.100.3) /usr/lib/system/libsystem_dnssd.dylib 0x7fff73517000 - 0x7fff73518ffb libsystem_featureflags.dylib (17) /usr/lib/system/libsystem_featureflags.dylib 0x7fff73519000 - 0x7fff73566ff7 libsystem_info.dylib (538) /usr/lib/system/libsystem_info.dylib 0x7fff73567000 - 0x7fff73593ff7 libsystem_kernel.dylib (6153.141.10) /usr/lib/system/libsystem_kernel.dylib 0x7fff73594000 - 0x7fff735dbfff libsystem_m.dylib (3178) /usr/lib/system/libsystem_m.dylib 0x7fff735dc000 - 0x7fff73603fff libsystem_malloc.dylib (283.100.6) /usr/lib/system/libsystem_malloc.dylib 0x7fff73604000 - 0x7fff73611ffb libsystem_networkextension.dylib (1095.140.2) /usr/lib/system/libsystem_networkextension.dylib 0x7fff73612000 - 0x7fff7361bff7 libsystem_notify.dylib (241.100.2) /usr/lib/system/libsystem_notify.dylib 0x7fff7361c000 - 0x7fff73624fef libsystem_platform.dylib (220.100.1) /usr/lib/system/libsystem_platform.dylib 0x7fff73625000 - 0x7fff7362ffff libsystem_pthread.dylib (416.100.3) /usr/lib/system/libsystem_pthread.dylib 0x7fff73630000 - 0x7fff73634ff3 libsystem_sandbox.dylib (1217.141.2) /usr/lib/system/libsystem_sandbox.dylib 0x7fff73635000 - 0x7fff73637fff libsystem_secinit.dylib (62.100.2) /usr/lib/system/libsystem_secinit.dylib 0x7fff73638000 - 0x7fff7363fffb libsystem_symptoms.dylib (1238.120.2) /usr/lib/system/libsystem_symptoms.dylib 0x7fff73640000 - 0x7fff73656ff2 libsystem_trace.dylib (1147.120.1) /usr/lib/system/libsystem_trace.dylib 0x7fff73658000 - 0x7fff7365dff7 libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib 0x7fff7365e000 - 0x7fff73693ffe libxpc.dylib (1738.140.2) /usr/lib/system/libxpc.dylib External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 711849 thread_create: 0 thread_set_state: 0 VM Region Summary: ReadOnly portion of Libraries: Total=967.9M resident=0K(0%) swapped_out_or_unallocated=967.9M(100%) Writable regions: Total=642.7M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=642.7M(100%) VIRTUAL REGION REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Activity Tracing 256K 1 Kernel Alloc Once 8K 1 MALLOC 182.4M 88 MALLOC guard page 16K 4 MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated) MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated) STACK GUARD 12K 3 Stack 9752K 4 Stack Guard 56.0M 1 VM_ALLOCATE 64.0M 2 __DATA 48.8M 436 __DATA_CONST 20K 1 __FONT_DATA 4K 1 __LINKEDIT 474.3M 74 __OBJC_RO 32.3M 1 __OBJC_RW 1908K 2 __TEXT 493.6M 417 __UNICODE 564K 1 mapped file 27.3M 2 shared memory 48K 6 =========== ======= ======= TOTAL 1.7G 1047 TOTAL, minus reserved VM space 1.4G 1047 Log: UCSF ChimeraX version: 1.4.dev202112041237 (2021-12-04) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 INTEL-14.7.11 OpenGL renderer: Intel(R) HD Graphics 6000 OpenGL vendor: Intel Inc.Hardware: Hardware Overview: Model Name: MacBook Air Model Identifier: MacBookAir7,2 Processor Name: Dual-Core Intel Core i5 Processor Speed: 1,8 GHz Number of Processors: 1 Total Number of Cores: 2 L2 Cache (per Core): 256 KB L3 Cache: 3 MB Hyper-Threading Technology: Enabled Memory: 8 GB Boot ROM Version: 425.0.0.0.0 SMC Version (system): 2.27f2 Software: System Software Overview: System Version: macOS 10.15.7 (19H114) Kernel Version: Darwin 19.6.0 Time since boot: 51 days 18:22 Graphics/Displays: Intel HD Graphics 6000: Chipset Model: Intel HD Graphics 6000 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x1626 Revision ID: 0x0009 Metal: Supported, feature set macOS GPUFamily1 v4 Displays: Color LCD: Display Type: LCD Resolution: 1440 x 900 (Widescreen eXtended Graphics Array Plus) UI Looks like: 1440 x 900 Framebuffer Depth: 24-Bit Color (ARGB8888) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal Locale: (None, 'UTF-8') PyQt5 5.15.2, Qt 5.15.2 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.2 Babel: 2.9.1 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2021.5.30 cftime: 1.5.1.1 charset-normalizer: 2.0.9 ChimeraX-AddCharge: 1.2.2 ChimeraX-AddH: 2.1.11 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.2.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.31.5 ChimeraX-AtomicLibrary: 4.2 ChimeraX-AtomSearch: 2.0 ChimeraX-AtomSearchLibrary: 1.0 ChimeraX-AxesPlanes: 2.1 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.0 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.6.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.2 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.2 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5 ChimeraX-CommandLine: 1.1.5 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.4.dev202112041237 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1.5 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.1.2 ChimeraX-Help: 1.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0 ChimeraX-Label: 1.1 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 2.0.4 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.4 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.5.1 ChimeraX-ModelPanel: 1.3.1 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.2 ChimeraX-OpenCommand: 1.8 ChimeraX-PDB: 2.6.5 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.4.6 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.1 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.6.1 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.0.1 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1 ChimeraX-ToolshedUtils: 1.2 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.15.1 ChimeraX-uniprot: 2.2 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.0.1 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.4 cxservices: 1.1 cycler: 0.11.0 Cython: 0.29.24 decorator: 5.1.0 docutils: 0.17.1 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 3.6.0 html2text: 2020.1.16 idna: 3.3 ihm: 0.21 imagecodecs: 2021.4.28 imagesize: 1.3.0 ipykernel: 5.5.5 ipython: 7.23.1 ipython-genutils: 0.2.0 jedi: 0.18.0 Jinja2: 3.0.1 jupyter-client: 6.1.12 jupyter-core: 4.9.1 kiwisolver: 1.3.2 lxml: 4.6.3 lz4: 3.1.3 MarkupSafe: 2.0.1 matplotlib: 3.4.3 matplotlib-inline: 0.1.3 msgpack: 1.0.2 netCDF4: 1.5.7 networkx: 2.6.3 numexpr: 2.8.0 numpy: 1.21.2 openvr: 1.16.801 packaging: 21.0 ParmEd: 3.2.0 parso: 0.8.3 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 8.3.2 pip: 21.2.4 pkginfo: 1.7.1 prompt-toolkit: 3.0.23 psutil: 5.8.0 ptyprocess: 0.7.0 pycollada: 0.7.1 pydicom: 2.1.2 Pygments: 2.10.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.6 PyQt5-commercial: 5.15.2 PyQt5-sip: 12.8.1 PyQtWebEngine-commercial: 5.15.2 python-dateutil: 2.8.2 pytz: 2021.3 pyzmq: 22.3.0 qtconsole: 5.1.1 QtPy: 1.11.3 RandomWords: 0.3.0 requests: 2.26.0 scipy: 1.7.1 setuptools: 57.5.0 sfftk-rw: 0.7.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 4.2.0 sphinx-autodoc-typehints: 1.12.0 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-jurko: 0.6 tifffile: 2021.4.8 tinyarray: 1.2.3 tornado: 6.1 traitlets: 5.1.1 urllib3: 1.26.7 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.37.0 wheel-filename: 1.3.0 }}} " defect closed normal Window Toolkit can't reproduce Tom Goddard all ChimeraX