id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 5676 Crash getting cursor position during mouse pause jean-marc.jeckelmann@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-10.16-x86_64-i386-64bit ChimeraX Version: 1.3rc202111240110 (2021-11-24 01:10:40 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Bus error Current thread 0x00000002002b8e00 (most recent call first): File ""/private/var/folders/q1/80r19qpj4818l0mystd4hgt40000gp/T/AppTranslocation/4D51A29E-868F-49ED-9D0C-A8D6C23C77CD/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/mouse_modes/mousemodes.py"", line 514 in _cursor_position File ""/private/var/folders/q1/80r19qpj4818l0mystd4hgt40000gp/T/AppTranslocation/4D51A29E-868F-49ED-9D0C-A8D6C23C77CD/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/mouse_modes/mousemodes.py"", line 472 in mouse_pause_tracking File ""/private/var/folders/q1/80r19qpj4818l0mystd4hgt40000gp/T/AppTranslocation/4D51A29E-868F-49ED-9D0C-A8D6C23C77CD/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/updateloop.py"", line 139 in _redraw_timer_callback File ""/private/var/folders/q1/80r19qpj4818l0mystd4hgt40000gp/T/AppTranslocation/4D51A29E-868F-49ED-9D0C-A8D6C23C77CD/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/ui/gui.py"", line 293 in event_loop File ""/private/var/folders/q1/80r19qpj4818l0mystd4hgt40000gp/T/AppTranslocation/4D51A29E-868F-49ED-9D0C-A8D6C23C77CD/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/ChimeraX_main.py"", line 866 in init File ""/private/var/folders/q1/80r19qpj4818l0mystd4hgt40000gp/T/AppTranslocation/4D51A29E-868F-49ED-9D0C-A8D6C23C77CD/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/ChimeraX_main.py"", line 1015 in File ""/private/var/folders/q1/80r19qpj4818l0mystd4hgt40000gp/T/AppTranslocation/4D51A29E-868F-49ED-9D0C-A8D6C23C77CD/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/runpy.py"", line 87 in _run_code File ""/private/var/folders/q1/80r19qpj4818l0mystd4hgt40000gp/T/AppTranslocation/4D51A29E-868F-49ED-9D0C-A8D6C23C77CD/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/runpy.py"", line 194 in _run_module_as_main Process: ChimeraX [11247] Path: /private/var/folders/*/ChimeraX-1.2.5.app/Contents/MacOS/ChimeraX Identifier: edu.ucsf.cgl.ChimeraX Version: 1.2.5 (1.2.5.0) Code Type: X86-64 (Translated) Parent Process: ??? [1] Responsible: ChimeraX [11247] User ID: 502 Date/Time: 2021-11-24 16:26:34.115 +0100 OS Version: macOS 11.6.1 (20G224) Report Version: 12 Anonymous UUID: 14D735B6-6836-1D3F-D3B2-CF98CDEE5E77 Time Awake Since Boot: 7800 seconds System Integrity Protection: enabled Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread Exception Type: EXC_BAD_ACCESS (SIGBUS) Exception Codes: KERN_MEMORY_ERROR at 0x000000014707e020 Exception Note: EXC_CORPSE_NOTIFY VM Regions Near 0x14707e020: shared memory 146f2c000-146f34000 [ 32K] r--/r-- SM=SHM --> mapped file 146f34000-1470a3000 [ 1468K] r-x/rwx SM=COW Object_id=28270bc7 mapped file 1470a3000-1470bb000 [ 96K] rw-/rwx SM=COW Object_id=2724dcc7 Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f792e __pthread_kill + 10 2 libsystem_c.dylib 0x00007fff2030abd5 raise + 26 3 libsystem_platform.dylib 0x00007fff2046bd7d _sigtramp + 29 4 select.cpython-38-darwin.so 000000000000000000 0 + 0 5 ??? 0x0000600000de65f0 ??? Thread 1:: com.apple.rosetta.exceptionserver 0 runtime 0x00007ffdffbe2a28 0x7ffdffbde000 + 18984 1 runtime 0x00007ffdffbe7eec 0x7ffdffbde000 + 40684 2 runtime 0x00007ffdffbe92c0 0x7ffdffbde000 + 45760 Thread 2: 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f3cde __psynch_cvwait + 10 2 ??? 0x000000010a6f827b ??? 3 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 3: 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f3cde __psynch_cvwait + 10 2 ??? 0x000000010a6f827b ??? 3 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 4: 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f3cde __psynch_cvwait + 10 2 ??? 0x000000010a6f827b ??? 3 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 5: 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f3cde __psynch_cvwait + 10 2 ??? 0x000000010a6f827b ??? 3 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 6: 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f3cde __psynch_cvwait + 10 2 ??? 0x000000010a6f827b ??? 3 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 7: 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f3cde __psynch_cvwait + 10 2 ??? 0x000000010a6f827b ??? 3 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 8: 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f3cde __psynch_cvwait + 10 2 ??? 0x000000010a6f827b ??? 3 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 9: 0 runtime 0x00007ffdffc007c8 0x7ffdffbde000 + 141256 Thread 10: 0 runtime 0x00007ffdffc007c8 0x7ffdffbde000 + 141256 Thread 11: 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f3cde __psynch_cvwait + 10 2 ??? 0x000000014c31f2eb ??? 3 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 12: 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f3cde __psynch_cvwait + 10 2 ??? 0x000000014c31f2eb ??? 3 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 13: 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f3cde __psynch_cvwait + 10 2 ??? 0x000000014c31f2eb ??? 3 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 14: 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f3cde __psynch_cvwait + 10 2 ??? 0x000000014c31f2eb ??? 3 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 15: 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f3cde __psynch_cvwait + 10 2 ??? 0x000000014c31f2eb ??? 3 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 16: 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f3cde __psynch_cvwait + 10 2 ??? 0x000000014c31f2eb ??? 3 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 17: 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f3cde __psynch_cvwait + 10 2 ??? 0x000000014c31f2eb ??? 3 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 18:: ThreadPoolServiceThread 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203fa1d2 kevent64 + 10 2 ??? 0x000000012a59dcc7 ??? 3 ??? 0x000000012a52662b ??? 4 ??? 0x000000012a4ea7cb ??? 5 ??? 0x000000012a531a94 ??? 6 ??? 0x000000012a545a7d ??? 7 ??? 0x000000012a58ee07 ??? 8 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 19:: ThreadPoolForegroundWorker 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f12ba mach_msg_trap + 10 2 ??? 0x000000012a593492 ??? 3 ??? 0x000000012a53b778 ??? 4 ??? 0x000000012a53c150 ??? 5 ??? 0x000000012a53bcd4 ??? 6 ??? 0x000000012a58ee07 ??? 7 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 20:: ThreadPoolBackgroundWorker 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f12ba mach_msg_trap + 10 2 ??? 0x000000012a593492 ??? 3 ??? 0x000000012a53b778 ??? 4 ??? 0x000000012a53be3d ??? 5 ??? 0x000000012a53bc44 ??? 6 ??? 0x000000012a58ee07 ??? 7 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 21:: Chrome_IOThread 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203fa1d2 kevent64 + 10 2 ??? 0x000000012a59dcc7 ??? 3 ??? 0x000000012a52662b ??? 4 ??? 0x000000012a4ea7cb ??? 5 ??? 0x000000012e46af06 ??? 6 ??? 0x000000012a545a7d ??? 7 ??? 0x000000012a58ee07 ??? 8 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 22:: NetworkConfigWatcher 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f12ba mach_msg_trap + 10 2 ??? 0x000000012a593492 ??? 3 ??? 0x000000012a5932cf ??? 4 ??? 0x000000012a4bb1db ??? 5 ??? 0x000000012a52662b ??? 6 ??? 0x000000012a4ea7cb ??? 7 ??? 0x000000012a545a7d ??? 8 ??? 0x000000012a58ee07 ??? 9 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 23:: ThreadPoolForegroundWorker 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f12ba mach_msg_trap + 10 2 ??? 0x000000012a593492 ??? 3 ??? 0x000000012a53b778 ??? 4 ??? 0x000000012a53c150 ??? 5 ??? 0x000000012a53bcd4 ??? 6 ??? 0x000000012a58ee07 ??? 7 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 24:: ThreadPoolForegroundWorker 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f12ba mach_msg_trap + 10 2 ??? 0x000000012a593492 ??? 3 ??? 0x000000012a53b778 ??? 4 ??? 0x000000012a53c150 ??? 5 ??? 0x000000012a53bcd4 ??? 6 ??? 0x000000012a58ee07 ??? 7 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 25:: ThreadPoolForegroundWorker 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f12ba mach_msg_trap + 10 2 ??? 0x000000012a593492 ??? 3 ??? 0x000000012a53b778 ??? 4 ??? 0x000000012a53c150 ??? 5 ??? 0x000000012a53bcd4 ??? 6 ??? 0x000000012a58ee07 ??? 7 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 26:: CompositorTileWorker1 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f3cde __psynch_cvwait + 10 2 ??? 0x000000012a58ae18 ??? 3 ??? 0x000000012b8425f8 ??? 4 ??? 0x000000012a58ee07 ??? 5 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 6 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 27:: Chrome_InProcGpuThread 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f12ba mach_msg_trap + 10 2 ??? 0x000000012a593492 ??? 3 ??? 0x000000012a4bb20f ??? 4 ??? 0x000000012a52662b ??? 5 ??? 0x000000012a4ea7cb ??? 6 ??? 0x000000012a545a7d ??? 7 ??? 0x000000012a58ee07 ??? 8 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 28:: Chrome_ChildIOThread 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203fa1d2 kevent64 + 10 2 ??? 0x000000012a59dcc7 ??? 3 ??? 0x000000012a52662b ??? 4 ??? 0x000000012a4ea7cb ??? 5 ??? 0x000000012a545a7d ??? 6 ??? 0x000000012a58ee07 ??? 7 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 29: 0 runtime 0x00007ffdffc007c8 0x7ffdffbde000 + 141256 Thread 30:: VizCompositorThread 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f12ba mach_msg_trap + 10 2 ??? 0x000000012a593492 ??? 3 ??? 0x000000012a5932cf ??? 4 ??? 0x000000012a4bb1db ??? 5 ??? 0x000000012a52662b ??? 6 ??? 0x000000012a4ea7cb ??? 7 ??? 0x000000012a545a7d ??? 8 ??? 0x000000012a58ee07 ??? 9 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 31:: NetworkConfigWatcher 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f12ba mach_msg_trap + 10 2 ??? 0x000000012a593492 ??? 3 ??? 0x000000012a5932cf ??? 4 ??? 0x000000012a4bb1db ??? 5 ??? 0x000000012a52662b ??? 6 ??? 0x000000012a4ea7cb ??? 7 ??? 0x000000012a545a7d ??? 8 ??? 0x000000012a58ee07 ??? 9 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 32:: NetworkConfigWatcher 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f12ba mach_msg_trap + 10 2 ??? 0x000000012a593492 ??? 3 ??? 0x000000012a5932cf ??? 4 ??? 0x000000012a4bb1db ??? 5 ??? 0x000000012a52662b ??? 6 ??? 0x000000012a4ea7cb ??? 7 ??? 0x000000012a545a7d ??? 8 ??? 0x000000012a58ee07 ??? 9 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 33:: ThreadPoolSingleThreadForegroundBlocking0 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f12ba mach_msg_trap + 10 2 ??? 0x000000012a593492 ??? 3 ??? 0x000000012a5932cf ??? 4 ??? 0x000000012a53b76a ??? 5 ??? 0x000000012a53c150 ??? 6 ??? 0x000000012a53bd34 ??? 7 ??? 0x000000012a58ee07 ??? 8 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 34:: MemoryInfra 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f12ba mach_msg_trap + 10 2 ??? 0x000000012a593492 ??? 3 ??? 0x000000012a5932cf ??? 4 ??? 0x000000012a4bb1db ??? 5 ??? 0x000000012a52662b ??? 6 ??? 0x000000012a4ea7cb ??? 7 ??? 0x000000012a545a7d ??? 8 ??? 0x000000012a58ee07 ??? 9 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 35: 0 runtime 0x00007ffdffc007c8 0x7ffdffbde000 + 141256 Thread 36: 0 runtime 0x00007ffdffc007c8 0x7ffdffbde000 + 141256 Thread 37:: NetworkConfigWatcher 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f12ba mach_msg_trap + 10 2 ??? 0x000000012a593492 ??? 3 ??? 0x000000012a5932cf ??? 4 ??? 0x000000012a4bb1db ??? 5 ??? 0x000000012a52662b ??? 6 ??? 0x000000012a4ea7cb ??? 7 ??? 0x000000012a545a7d ??? 8 ??? 0x000000012a58ee07 ??? 9 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 38: 0 runtime 0x00007ffdffc007c8 0x7ffdffbde000 + 141256 Thread 39: 0 runtime 0x00007ffdffc007c8 0x7ffdffbde000 + 141256 Thread 40: 0 runtime 0x00007ffdffc007c8 0x7ffdffbde000 + 141256 Thread 41: 0 runtime 0x00007ffdffc007c8 0x7ffdffbde000 + 141256 Thread 42:: com.apple.NSEventThread 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f12ba mach_msg_trap + 10 2 com.apple.CoreFoundation 0x00007fff2051f215 __CFRunLoopServiceMachPort + 316 3 com.apple.CoreFoundation 0x00007fff2051d8cb __CFRunLoopRun + 1332 4 com.apple.CoreFoundation 0x00007fff2051ccd0 CFRunLoopRunSpecific + 567 5 ??? 0x00007fff22dd623a ??? 6 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 7 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 43: 0 runtime 0x00007ffdffc007c8 0x7ffdffbde000 + 141256 Thread 44: 0 runtime 0x00007ffdffc007c8 0x7ffdffbde000 + 141256 Thread 45:: ThreadPoolSingleThreadSharedBackgroundBlocking1 0 ??? 0x00007ffe946568f4 ??? 1 libsystem_kernel.dylib 0x00007fff203f12ba mach_msg_trap + 10 2 ??? 0x000000012a593492 ??? 3 ??? 0x000000012a5932cf ??? 4 ??? 0x000000012a53b76a ??? 5 ??? 0x000000012a53be3d ??? 6 ??? 0x000000012a53bc74 ??? 7 ??? 0x000000012a58ee07 ??? 8 libsystem_pthread.dylib 0x00007fff204268fc _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff20422443 thread_start + 15 Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000000000000 rbx: 0x00000002002b8e00 rcx: 0x0000000000000000 rdx: 0x0000000000000000 rdi: 0x70185516b724f0d3 rsi: 0x0000000148af5088 rbp: 0x70185516b724f0d3 rsp: 0x0000000148af5088 r8: 0x000000000000000a r9: 0x70185516b724f0d3 r10: 0x00000002002b8e00 r11: 0x00007fff2030abbb r12: 0x0000000000000103 r13: 0x0000000000000003 r14: 0x000000000000000a r15: 0x0000000000000016 rip: rfl: 0x0000000000000283 Binary Images: 0 - 0xffffffffffffffff +select.cpython-38-darwin.so (???) /private/var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/select.cpython-38-darwin.so 0x1080ea000 - 0x108139fff +libRosettaRuntime (203.58) /Library/Apple/*/libRosettaRuntime 0x2001e1000 - 0x20027cfff dyld (852.2) /usr/lib/dyld 0x7ffdffbde000 - 0x7ffdffc0dfff runtime (203.58) /usr/libexec/rosetta/runtime 0x7fff2015e000 - 0x7fff2015ffff libsystem_blocks.dylib (79) /usr/lib/system/libsystem_blocks.dylib 0x7fff20160000 - 0x7fff20195fff libxpc.dylib (2038.120.1) /usr/lib/system/libxpc.dylib 0x7fff20196000 - 0x7fff201adfff libsystem_trace.dylib (1277.120.1) /usr/lib/system/libsystem_trace.dylib 0x7fff201ae000 - 0x7fff2024bfff libcorecrypto.dylib (1000.140.4) /usr/lib/system/libcorecrypto.dylib 0x7fff2024c000 - 0x7fff20278fff libsystem_malloc.dylib (317.140.5) /usr/lib/system/libsystem_malloc.dylib 0x7fff20279000 - 0x7fff202bdfff libdispatch.dylib (1271.120.2) /usr/lib/system/libdispatch.dylib 0x7fff202be000 - 0x7fff202f7fff libobjc.A.dylib (824) /usr/lib/libobjc.A.dylib 0x7fff202f8000 - 0x7fff202fafff libsystem_featureflags.dylib (28.60.1) /usr/lib/system/libsystem_featureflags.dylib 0x7fff202fb000 - 0x7fff20383fff libsystem_c.dylib (1439.141.1) /usr/lib/system/libsystem_c.dylib 0x7fff20384000 - 0x7fff203d9fff libc++.1.dylib (905.6) /usr/lib/libc++.1.dylib 0x7fff203da000 - 0x7fff203effff libc++abi.dylib (905.6) /usr/lib/libc++abi.dylib 0x7fff203f0000 - 0x7fff2041ffff libsystem_kernel.dylib (7195.141.8) /usr/lib/system/libsystem_kernel.dylib 0x7fff20420000 - 0x7fff2042bfff libsystem_pthread.dylib (454.120.2) /usr/lib/system/libsystem_pthread.dylib 0x7fff2042c000 - 0x7fff20467fff libdyld.dylib (852.2) /usr/lib/system/libdyld.dylib 0x7fff20468000 - 0x7fff20471fff libsystem_platform.dylib (254.80.2) /usr/lib/system/libsystem_platform.dylib 0x7fff20472000 - 0x7fff2049dfff libsystem_info.dylib (542.40.3) /usr/lib/system/libsystem_info.dylib 0x7fff2049e000 - 0x7fff2093cfff com.apple.CoreFoundation (6.9 - 1778.101) /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation 0x7fff22538000 - 0x7fff22797fff libicucore.A.dylib (66112) /usr/lib/libicucore.A.dylib 0x7fff22798000 - 0x7fff227a1fff libsystem_darwin.dylib (1439.141.1) /usr/lib/system/libsystem_darwin.dylib 0x7fff22bb7000 - 0x7fff22bc2fff libsystem_notify.dylib (279.40.4) /usr/lib/system/libsystem_notify.dylib 0x7fff24b4f000 - 0x7fff24b5dfff libsystem_networkextension.dylib (1295.140.3) /usr/lib/system/libsystem_networkextension.dylib 0x7fff24bbc000 - 0x7fff24bd2fff libsystem_asl.dylib (385) /usr/lib/system/libsystem_asl.dylib 0x7fff262ce000 - 0x7fff262d5fff libsystem_symptoms.dylib (1431.140.1) /usr/lib/system/libsystem_symptoms.dylib 0x7fff285e1000 - 0x7fff285f1fff libsystem_containermanager.dylib (318.100.4) /usr/lib/system/libsystem_containermanager.dylib 0x7fff292f9000 - 0x7fff292fcfff libsystem_configuration.dylib (1109.140.1) /usr/lib/system/libsystem_configuration.dylib 0x7fff292fd000 - 0x7fff29301fff libsystem_sandbox.dylib (1441.141.4) /usr/lib/system/libsystem_sandbox.dylib 0x7fff29f01000 - 0x7fff29f03fff libquarantine.dylib (119.40.2) /usr/lib/system/libquarantine.dylib 0x7fff2a49f000 - 0x7fff2a4abfff libbz2.1.0.dylib (44) /usr/lib/libbz2.1.0.dylib 0x7fff2a4ac000 - 0x7fff2a4b0fff libsystem_coreservices.dylib (127.1) /usr/lib/system/libsystem_coreservices.dylib 0x7fff2a6ad000 - 0x7fff2a6bffff libz.1.dylib (76) /usr/lib/libz.1.dylib 0x7fff2a6c0000 - 0x7fff2a70bfff libsystem_m.dylib (3186.100.3) /usr/lib/system/libsystem_m.dylib 0x7fff2a70d000 - 0x7fff2a712fff libmacho.dylib (980) /usr/lib/system/libmacho.dylib 0x7fff2a72f000 - 0x7fff2a73afff libcommonCrypto.dylib (60178.120.3) /usr/lib/system/libcommonCrypto.dylib 0x7fff2a73b000 - 0x7fff2a745fff libunwind.dylib (201) /usr/lib/system/libunwind.dylib 0x7fff2a746000 - 0x7fff2a74dfff liboah.dylib (203.58) /usr/lib/liboah.dylib 0x7fff2a74e000 - 0x7fff2a758fff libcopyfile.dylib (173.40.2) /usr/lib/system/libcopyfile.dylib 0x7fff2a759000 - 0x7fff2a760fff libcompiler_rt.dylib (102.2) /usr/lib/system/libcompiler_rt.dylib 0x7fff2a761000 - 0x7fff2a763fff libsystem_collections.dylib (1439.141.1) /usr/lib/system/libsystem_collections.dylib 0x7fff2a764000 - 0x7fff2a766fff libsystem_secinit.dylib (87.60.1) /usr/lib/system/libsystem_secinit.dylib 0x7fff2a767000 - 0x7fff2a769fff libremovefile.dylib (49.120.1) /usr/lib/system/libremovefile.dylib 0x7fff2a76a000 - 0x7fff2a76afff libkeymgr.dylib (31) /usr/lib/system/libkeymgr.dylib 0x7fff2a76b000 - 0x7fff2a772fff libsystem_dnssd.dylib (1310.140.1) /usr/lib/system/libsystem_dnssd.dylib 0x7fff2a773000 - 0x7fff2a778fff libcache.dylib (83) /usr/lib/system/libcache.dylib 0x7fff2a779000 - 0x7fff2a77afff libSystem.B.dylib (1292.120.1) /usr/lib/libSystem.B.dylib 0x7fff2a77b000 - 0x7fff2a77efff libfakelink.dylib (3) /usr/lib/libfakelink.dylib 0x7fff2a77f000 - 0x7fff2a77ffff com.apple.SoftLinking (1.0 - 1) /System/Library/PrivateFrameworks/SoftLinking.framework/Versions/A/SoftLinking 0x7fff2dcd2000 - 0x7fff2dcd2fff liblaunch.dylib (2038.120.1) /usr/lib/system/liblaunch.dylib 0x7fff30169000 - 0x7fff30169fff libsystem_product_info_filter.dylib (8.40.1) /usr/lib/system/libsystem_product_info_filter.dylib Translated Code Information: tmp0: 0xffffffffffffffff tmp1: 0x00007ffe946568c8 tmp2: 0x00007fff203f7924 External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 0 thread_create: 0 thread_set_state: 0 VM Region Summary: ReadOnly portion of Libraries: Total=517.9M resident=0K(0%) swapped_out_or_unallocated=517.9M(100%) Writable regions: Total=2.3G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.3G(100%) VIRTUAL REGION REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Accelerate framework 256K 2 Activity Tracing 256K 1 CG image 80K 8 CoreAnimation 48K 8 CoreGraphics 16K 3 CoreUI image data 1432K 10 Foundation 16K 1 Kernel Alloc Once 8K 1 MALLOC 404.2M 78 MALLOC guard page 192K 8 MALLOC_MEDIUM (reserved) 728.0M 7 reserved VM address space (unallocated) MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated) Mach message 24K 6 OpenGL GLSL 256K 3 Rosetta Arena 4096K 2 Rosetta Generic 1576K 391 Rosetta IndirectBranch 1024K 1 Rosetta JIT 128.0M 1 Rosetta Return Stack 780K 78 Rosetta Thread Context 780K 78 STACK GUARD 44K 11 Stack 165.2M 45 Stack Guard 56.1M 34 VM_ALLOCATE 98.3M 185 VM_ALLOCATE (reserved) 384.1M 14 reserved VM address space (unallocated) __DATA 532K 52 __DATA_CONST 2984K 40 __DATA_DIRTY 95K 24 __LINKEDIT 505.4M 7 __OBJC_RO 70.3M 1 __OBJC_RW 2480K 2 __TEXT 12.5M 51 __UNICODE 588K 1 dylib 2360K 36 dylib (reserved) 100K 9 reserved VM address space (unallocated) mapped file 5.4G 1086 shared memory 920K 39 unshared pmap 10.2M 6 =========== ======= ======= TOTAL 8.3G 2331 TOTAL, minus reserved VM space 6.8G 2331 Log: Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.3rc202111240110 (2021-11-24) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 71.7.1 OpenGL renderer: Apple M1 OpenGL vendor: AppleHardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro17,1 Processor Name: Unknown Processor Speed: 2.4 GHz Number of Processors: 1 Total Number of Cores: 8 L2 Cache (per Core): 4 MB Memory: 16 GB Software: System Software Overview: System Version: macOS 11.6.1 (20G224) Kernel Version: Darwin 20.6.0 Time since boot: 2:15 Graphics/Displays: Apple M1: Chipset Model: Apple M1 Type: GPU Bus: Built-In Total Number of Cores: 8 Vendor: Apple (0x106b) Metal Family: Supported, Metal GPUFamily Apple 7 Displays: U3277WB: Resolution: 5120 x 2880 (5K/UHD+ - Ultra High Definition Plus) UI Looks like: 2560 x 1440 @ 60.00Hz Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Color LCD: Resolution: 2880 x 1800 UI Looks like: 1440 x 900 @ 60.00Hz Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal Locale: (None, 'UTF-8') PyQt5 5.15.2, Qt 5.15.2 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.2 Babel: 2.9.1 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2021.5.30 cftime: 1.5.1.1 charset-normalizer: 2.0.7 ChimeraX-AddCharge: 1.2.2 ChimeraX-AddH: 2.1.10 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.2.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.30.2 ChimeraX-AtomicLibrary: 4.1.6 ChimeraX-AtomSearch: 2.0 ChimeraX-AtomSearchLibrary: 1.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.0 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.6 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.2 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.2 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5 ChimeraX-CommandLine: 1.1.5 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.3rc202111240110 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1.5 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.1.2 ChimeraX-Help: 1.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0 ChimeraX-Label: 1.1 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.4 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 2.0.4 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.4 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.2.6 ChimeraX-ModelPanel: 1.2.1 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.2 ChimeraX-OpenCommand: 1.7 ChimeraX-PDB: 2.6.5 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.4.6 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.1 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.6.1 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1 ChimeraX-ToolshedUtils: 1.2 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.13.7 ChimeraX-uniprot: 2.2 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.0.1 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.4 cxservices: 1.1 cycler: 0.11.0 Cython: 0.29.24 decorator: 5.1.0 docutils: 0.17.1 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 3.6.0 html2text: 2020.1.16 idna: 3.3 ihm: 0.21 imagecodecs: 2021.4.28 imagesize: 1.3.0 ipykernel: 5.5.5 ipython: 7.23.1 ipython-genutils: 0.2.0 jedi: 0.18.0 Jinja2: 3.0.1 jupyter-client: 6.1.12 jupyter-core: 4.9.1 kiwisolver: 1.3.2 lxml: 4.6.3 lz4: 3.1.3 MarkupSafe: 2.0.1 matplotlib: 3.4.3 matplotlib-inline: 0.1.3 msgpack: 1.0.2 netCDF4: 1.5.7 networkx: 2.6.3 numexpr: 2.7.3 numpy: 1.21.2 openvr: 1.16.801 packaging: 21.0 ParmEd: 3.2.0 parso: 0.8.2 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 8.3.2 pip: 21.2.4 pkginfo: 1.7.1 prompt-toolkit: 3.0.22 psutil: 5.8.0 ptyprocess: 0.7.0 pycollada: 0.7.1 pydicom: 2.1.2 Pygments: 2.10.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.6 PyQt5-commercial: 5.15.2 PyQt5-sip: 12.8.1 PyQtWebEngine-commercial: 5.15.2 python-dateutil: 2.8.2 pytz: 2021.3 pyzmq: 22.3.0 qtconsole: 5.1.1 QtPy: 1.11.2 RandomWords: 0.3.0 requests: 2.26.0 scipy: 1.7.1 setuptools: 57.5.0 sfftk-rw: 0.7.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 4.2.0 sphinx-autodoc-typehints: 1.12.0 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-jurko: 0.6 tifffile: 2021.4.8 tinyarray: 1.2.3 tornado: 6.1 traitlets: 5.1.1 urllib3: 1.26.7 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.37.0 wheel-filename: 1.3.0 }}} " defect closed normal General Controls can't reproduce Eric Pettersen all ChimeraX