id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 5551 unhashable type: 'Color' jglavina@… Tom Goddard "{{{ The following bug report has been submitted: Platform: Linux-5.11.0-38-generic-x86_64-with-glibc2.31 ChimeraX Version: 1.3.dev202109060834 (2021-09-06 08:34:57 UTC) Description TypeError: unhashable type: 'Color' when Using this command: mlp #1/A key true palette -20,dodgerblue:0,white:20,orangered It works when Using this command: mlp #1/A key true palette -20,blue:0,white:20,red Log: UCSF ChimeraX version: 1.3.dev202109060834 (2021-09-06) © 2016-2021 Regents of the University of California. All rights reserved. > open > /home/juliana/Documents/PROYECTO_RB/consurf/Consurf_Outputs_1636043549_Vertebrata_AlphaFold/Vertebrata.cxs Log from Thu Nov 4 14:08:58 2021UCSF ChimeraX version: 1.3.dev202109060834 (2021-09-06) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open > /home/juliana/Documents/PROYECTO_RB/data/estructuras/AF-P06400-F1-model_v1_PoketDomain.pdb Summary of feedback from opening /home/juliana/Documents/PROYECTO_RB/data/estructuras/AF-P06400-F1-model_v1_PoketDomain.pdb --- warnings | Start residue of secondary structure not found: HELIX 1 1 PHE A 49 GLU A 51 1 3 Start residue of secondary structure not found: HELIX 2 2 PRO A 55 LYS A 63 1 9 Start residue of secondary structure not found: HELIX 3 3 ASP A 68 SER A 82 1 15 Start residue of secondary structure not found: HELIX 4 4 VAL A 87 LYS A 94 1 8 Start residue of secondary structure not found: HELIX 5 5 LYS A 95 ASP A 109 1 15 25 messages similar to the above omitted AF-P06400-F1-model_v1_PoketDomain.pdb title: Alphafold V2.0 prediction for retinoblastoma-associated protein (P06400) [more info...] Chain information for AF-P06400-F1-model_v1_PoketDomain.pdb #1 --- Chain | Description | UniProt A | retinoblastoma-associated protein | RB_HUMAN > open > /home/juliana/Documents/PROYECTO_RB/data/alineamientos/20211102_HighConfidence_RbHuman_PocketDomain_cleaned_cut.fasta Summary of feedback from opening /home/juliana/Documents/PROYECTO_RB/data/alineamientos/20211102_HighConfidence_RbHuman_PocketDomain_cleaned_cut.fasta --- notes | Alignment identifier is 20211102_HighConfidence_RbHuman_PocketDomain_cleaned_cut.fasta Associated AF-P06400-F1-model_v1_PoketDomain.pdb chain A to Chimpanzee_(Pan_troglodytes)|Primates|ENSPTRP00000009974_Ptro/1-928 ENSPTRP00000009974_Ptro/1-928 with 0 mismatches Showing conservation header (""seq_conservation"" residue attribute) for alignment 20211102_HighConfidence_RbHuman_PocketDomain_cleaned_cut.fasta Opened 118 sequences from 20211102_HighConfidence_RbHuman_PocketDomain_cleaned_cut.fasta > sequence associate /A > 20211102_HighConfidence_RbHuman_PocketDomain_cleaned_cut.fasta:1 Disassociated AF-P06400-F1-model_v1_PoketDomain.pdb chain A from Chimpanzee_(Pan_troglodytes)|Primates|ENSPTRP00000009974_Ptro/1-928 ENSPTRP00000009974_Ptro/1-928 Associated AF-P06400-F1-model_v1_PoketDomain.pdb chain A to sp|P06400|RB_HUMAN with 0 mismatches > sequence associate /A > 20211102_HighConfidence_RbHuman_PocketDomain_cleaned_cut.fasta Disassociated AF-P06400-F1-model_v1_PoketDomain.pdb chain A from sp|P06400|RB_HUMAN Associated AF-P06400-F1-model_v1_PoketDomain.pdb chain A to Chimpanzee_(Pan_troglodytes)|Primates|ENSPTRP00000009974_Ptro/1-928 ENSPTRP00000009974_Ptro/1-928 with 0 mismatches > sequence associate /A > 20211102_HighConfidence_RbHuman_PocketDomain_cleaned_cut.fasta:1 Disassociated AF-P06400-F1-model_v1_PoketDomain.pdb chain A from Chimpanzee_(Pan_troglodytes)|Primates|ENSPTRP00000009974_Ptro/1-928 ENSPTRP00000009974_Ptro/1-928 Associated AF-P06400-F1-model_v1_PoketDomain.pdb chain A to sp|P06400|RB_HUMAN with 0 mismatches > sequence viewer > 20211102_HighConfidence_RbHuman_PocketDomain_cleaned_cut.fasta scfLoad > /home/juliana/Documents/PROYECTO_RB/consurf/Consurf_Outputs_1636043549_Vertebrata_AlphaFold/ConSurf_AF_P06400_F1_model_v1_PoketDomain_pdb_RUN_1636043549_isd.scf > color True > open 1gux 1gux title: Rb pocket bound to E7 lxcxe motif [more info...] Chain information for 1gux #2 --- Chain | Description | UniProt A | retinoblastoma protein | RB_HUMAN B | retinoblastoma protein | RB_HUMAN E | oncoprotein | > ui tool show Matchmaker > matchmaker #!2 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker AF-P06400-F1-model_v1_PoketDomain.pdb, chain A (#1) with 1gux, chain A (#2), sequence alignment score = 1038 RMSD between 159 pruned atom pairs is 0.567 angstroms; (across all 177 pairs: 1.633) > open 2r7g 2r7g title: Structure of the retinoblastoma protein pocket domain in complex with adenovirus E1A CR1 domain [more info...] Chain information for 2r7g #3 --- Chain | Description | UniProt A C | Retinoblastoma-associated protein | RB_HUMAN B D E | Early E1A 32 kDa protein | E1A_ADE05 Non-standard residues in 2r7g #3 --- SO4 — sulfate ion > select #3 6267 atoms, 5900 bonds, 4 pseudobonds, 1186 residues, 2 models selected > style #3 ribbon Expected a keyword > style #3 cartoon Expected a keyword > ~ball Unknown command: ~ball > ~ball Unknown command: ~ball > style #3 cartoon Expected a keyword > help style > cartoon #3 > hide solvent > ~display > ~select Nothing selected > ui tool show Matchmaker > matchmaker #!2-3 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker AF-P06400-F1-model_v1_PoketDomain.pdb, chain A (#1) with 1gux, chain A (#2), sequence alignment score = 1038 RMSD between 159 pruned atom pairs is 0.567 angstroms; (across all 177 pairs: 1.633) Matchmaker AF-P06400-F1-model_v1_PoketDomain.pdb, chain A (#1) with 2r7g, chain C (#3), sequence alignment score = 1684.4 RMSD between 309 pruned atom pairs is 0.884 angstroms; (across all 337 pairs: 1.761) > ~cartoon #3/A > ~cartoon #3/B > ~cartoon #3/E > info #2 2 models #2, 1gux, shown 3097 atoms, 2763 bonds, 715 residues, 3 chains (A,B,E) 2 missing structure #2.1, missing structure, shown, 2 pseudobonds > cartoon #2/E > ~cartoon #2/B > ~cartoon #2/A > ~cartoon #3/A > ~cartoon #3/C > ~cartoon #1 > cartoon #1/A > ~cartoon #1/A > cartoon #1/A:380-577,645-785 > color #3/D orange > color #2/E orange > cartoon #2/E style strand arrows false Expected a keyword > help ""cartoon style"" No help found for '""cartoon style""' > help cartoon > cartoon style #2/E arrows false > cartoon style #2/E arrows false width 0.4 thickness 0.4 xsection oval > cartoon style #3/D width 0.4 thickness 0.4 xsection oval > surface #1/A:380-577,645-785 > ~surface #1/A:380-577,645-785 > ui tool show ""Color Actions"" > save > /home/juliana/Documents/PROYECTO_RB/consurf/Consurf_Outputs_1636043549_Vertebrata_AlphaFold/Vertebrata.cxs ——— End of log from Thu Nov 4 14:08:58 2021 ——— opened ChimeraX session > sequence viewer > 20211102_HighConfidence_RbHuman_PocketDomain_cleaned_cut.fasta scfLoad > /home/juliana/Documents/PROYECTO_RB/consurf/Consurf_Outputs_1636043549_Vertebrata_AlphaFold/ConSurf_AF_P06400_F1_model_v1_PoketDomain_pdb_RUN_1636043549.scf > color True > open > /home/juliana/Documents/PROYECTO_RB/data/alineamientos/HighConfidence/20211102_HighConfidence_RbHuman_PocketDomain_cleaned_cut_Sel.fasta Summary of feedback from opening /home/juliana/Documents/PROYECTO_RB/data/alineamientos/HighConfidence/20211102_HighConfidence_RbHuman_PocketDomain_cleaned_cut_Sel.fasta --- notes | Alignment identifier is 20211102_HighConfidence_RbHuman_PocketDomain_cleaned_cut_Sel.fasta Associated AF-P06400-F1-model_v1_PoketDomain.pdb chain A to Chimpanzee_(Pan_troglodytes)|Primates|ENSPTRP00000009974_Ptro/1-928 ENSPTRP00000009974_Ptro/1-928 with 0 mismatches Showing conservation header (""seq_conservation"" residue attribute) for alignment 20211102_HighConfidence_RbHuman_PocketDomain_cleaned_cut_Sel.fasta Opened 14 sequences from 20211102_HighConfidence_RbHuman_PocketDomain_cleaned_cut_Sel.fasta > sequence associate #1/A > 20211102_HighConfidence_RbHuman_PocketDomain_cleaned_cut_Sel.fasta:1 Disassociated AF-P06400-F1-model_v1_PoketDomain.pdb chain A from Chimpanzee_(Pan_troglodytes)|Primates|ENSPTRP00000009974_Ptro/1-928 ENSPTRP00000009974_Ptro/1-928 Associated AF-P06400-F1-model_v1_PoketDomain.pdb chain A to sp|P06400|RB_HUMAN with 0 mismatches > sequence viewer > 20211102_HighConfidence_RbHuman_PocketDomain_cleaned_cut_Sel.fasta scfLoad > /home/juliana/Documents/PROYECTO_RB/consurf/Consurf_Outputs_1636043549_Vertebrata_AlphaFold/ConSurf_AF_P06400_F1_model_v1_PoketDomain_pdb_RUN_1636043549.scf > color True > bgcolor white Unknown command: bgcolor white > set bgColor white > surface #1 > color fromatoms > ~surface > info #1 2 models #1, AF-P06400-F1-model_v1_PoketDomain.pdb, shown 3297 atoms, 3363 bonds, 406 residues, 1 chains (A) #1.1, AF-P06400-F1-model_v1_PoketDomain.pdb_A SES surface, shown, 400232 triangles > surface #2 > surface #1 > ~surface #1 > ~surface > name pocket #1/A:380-577,645-785 > surfacepocket Unknown command: surfacepocket > surface pocket > surface enclose pocket > color #1.1 fromatoms > save > /home/juliana/Documents/PROYECTO_RB/consurf/Consurf_Outputs_1636043549_Vertebrata_AlphaFold/Vertebrata_Surf.cxs > help rotate No help found for 'rotate' > help rota No help found for 'rota' > turn [Repeated 1 time(s)] > ui tool show ""Show Sequence Viewer"" > open > /home/juliana/Documents/PROYECTO_RB/data/alineamientos/HighConfidence/20211102_HighConfidence_RbHuman_PocketDomain_cleaned_cut.fasta Summary of feedback from opening /home/juliana/Documents/PROYECTO_RB/data/alineamientos/HighConfidence/20211102_HighConfidence_RbHuman_PocketDomain_cleaned_cut.fasta --- notes | Alignment identifier is 20211102_HighConfidence_RbHuman_PocketDomain_cleaned_cut.fasta Associated AF-P06400-F1-model_v1_PoketDomain.pdb chain A to Chimpanzee_(Pan_troglodytes)|Primates|ENSPTRP00000009974_Ptro/1-928 ENSPTRP00000009974_Ptro/1-928 with 0 mismatches Showing conservation header (""seq_conservation"" residue attribute) for alignment 20211102_HighConfidence_RbHuman_PocketDomain_cleaned_cut.fasta Opened 118 sequences from 20211102_HighConfidence_RbHuman_PocketDomain_cleaned_cut.fasta > sequence associate #1/A > 20211102_HighConfidence_RbHuman_PocketDomain_cleaned_cut.fasta:1 Disassociated AF-P06400-F1-model_v1_PoketDomain.pdb chain A from Chimpanzee_(Pan_troglodytes)|Primates|ENSPTRP00000009974_Ptro/1-928 ENSPTRP00000009974_Ptro/1-928 Associated AF-P06400-F1-model_v1_PoketDomain.pdb chain A to sp|P06400|RB_HUMAN with 0 mismatches > sequence viewer > 20211102_HighConfidence_RbHuman_PocketDomain_cleaned_cut.fasta scfLoad > /home/juliana/Documents/PROYECTO_RB/consurf/Consurf_Outputs_1636043549_Vertebrata_AlphaFold/ConSurf_AF_P06400_F1_model_v1_PoketDomain_pdb_RUN_1636043549.scf > color True > save > /home/juliana/Documents/PROYECTO_RB/consurf/Consurf_Outputs_1636043549_Vertebrata_AlphaFold/Vertebrata_Surf_Lipophylic.cxs > mlp #1 Map values for surface ""AF-P06400-F1-model_v1_PoketDomain.pdb_A SES surface"": minimum -27.63, mean -5.355, maximum 22.11 > mlp #1 key true pallette -20,dogerblue:0,white:20,orangered Expected a keyword > mlp #1 key true pallette -20,dodgerblue:0,white:20,orangered Expected a keyword > mlp #1/A key true palette -20,dodgerblue:0,white:20,orangered Map values for surface ""AF-P06400-F1-model_v1_PoketDomain.pdb_A SES surface"": minimum -27.63, mean -5.355, maximum 22.11 Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax-daily/lib/python3.9/site- packages/chimerax/cmd_line/tool.py"", line 297, in execute cmd.run(cmd_text) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.9/site- packages/chimerax/core/commands/cli.py"", line 2856, in run result = ci.function(session, **kw_args) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.9/site- packages/chimerax/mlp/mlp.py"", line 92, in mlp show_key(session, cmap) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.9/site- packages/chimerax/color_key/cmd.py"", line 161, in show_key key_arg = ' '.join([StringArg.unparse((""%s:"" + v_fmt) % (color_name(rgba_to_rgba8(c)), dv)) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.9/site- packages/chimerax/color_key/cmd.py"", line 161, in key_arg = ' '.join([StringArg.unparse((""%s:"" + v_fmt) % (color_name(rgba_to_rgba8(c)), dv)) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.9/site- packages/chimerax/core/colors.py"", line 779, in color_name _color_names = {rgba8:name for name, rgba8 in BuiltinColors.items()} File ""/usr/lib/ucsf-chimerax-daily/lib/python3.9/site- packages/chimerax/core/colors.py"", line 779, in _color_names = {rgba8:name for name, rgba8 in BuiltinColors.items()} TypeError: unhashable type: 'Color' TypeError: unhashable type: 'Color' File ""/usr/lib/ucsf-chimerax-daily/lib/python3.9/site- packages/chimerax/core/colors.py"", line 779, in _color_names = {rgba8:name for name, rgba8 in BuiltinColors.items()} See log for complete Python traceback. > mlp #1/A key true palette -20,blue:0,white:20,red Map values for surface ""AF-P06400-F1-model_v1_PoketDomain.pdb_A SES surface"": minimum -27.63, mean -5.355, maximum 22.11 > key blue-white-red :-20 :0 :20 showTool true > ui mousemode left ""color key"" > key pos 0.749298,0.107792 size 0,0 [Repeated 1 time(s)] > key pos 0.647334,0.0779221 size 0.289991,0.0220779 > ui mousemode left rotate > mlp #1/A key true palette -20,dodgerblue:0,white:20,red Map values for surface ""AF-P06400-F1-model_v1_PoketDomain.pdb_A SES surface"": minimum -27.63, mean -5.355, maximum 22.11 Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax-daily/lib/python3.9/site- packages/chimerax/cmd_line/tool.py"", line 297, in execute cmd.run(cmd_text) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.9/site- packages/chimerax/core/commands/cli.py"", line 2856, in run result = ci.function(session, **kw_args) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.9/site- packages/chimerax/mlp/mlp.py"", line 92, in mlp show_key(session, cmap) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.9/site- packages/chimerax/color_key/cmd.py"", line 161, in show_key key_arg = ' '.join([StringArg.unparse((""%s:"" + v_fmt) % (color_name(rgba_to_rgba8(c)), dv)) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.9/site- packages/chimerax/color_key/cmd.py"", line 161, in key_arg = ' '.join([StringArg.unparse((""%s:"" + v_fmt) % (color_name(rgba_to_rgba8(c)), dv)) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.9/site- packages/chimerax/core/colors.py"", line 779, in color_name _color_names = {rgba8:name for name, rgba8 in BuiltinColors.items()} File ""/usr/lib/ucsf-chimerax-daily/lib/python3.9/site- packages/chimerax/core/colors.py"", line 779, in _color_names = {rgba8:name for name, rgba8 in BuiltinColors.items()} TypeError: unhashable type: 'Color' TypeError: unhashable type: 'Color' File ""/usr/lib/ucsf-chimerax-daily/lib/python3.9/site- packages/chimerax/core/colors.py"", line 779, in _color_names = {rgba8:name for name, rgba8 in BuiltinColors.items()} See log for complete Python traceback. > mlp #1/A key true palette -20,dodgeblue:0,white:20,red Invalid ""palette"" argument: Invalid color name or specifier > mlp #1/A key true palette -20,blue:0,white:20,orangered Map values for surface ""AF-P06400-F1-model_v1_PoketDomain.pdb_A SES surface"": minimum -27.63, mean -5.355, maximum 22.11 Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax-daily/lib/python3.9/site- packages/chimerax/cmd_line/tool.py"", line 297, in execute cmd.run(cmd_text) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.9/site- packages/chimerax/core/commands/cli.py"", line 2856, in run result = ci.function(session, **kw_args) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.9/site- packages/chimerax/mlp/mlp.py"", line 92, in mlp show_key(session, cmap) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.9/site- packages/chimerax/color_key/cmd.py"", line 161, in show_key key_arg = ' '.join([StringArg.unparse((""%s:"" + v_fmt) % (color_name(rgba_to_rgba8(c)), dv)) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.9/site- packages/chimerax/color_key/cmd.py"", line 161, in key_arg = ' '.join([StringArg.unparse((""%s:"" + v_fmt) % (color_name(rgba_to_rgba8(c)), dv)) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.9/site- packages/chimerax/core/colors.py"", line 779, in color_name _color_names = {rgba8:name for name, rgba8 in BuiltinColors.items()} File ""/usr/lib/ucsf-chimerax-daily/lib/python3.9/site- packages/chimerax/core/colors.py"", line 779, in _color_names = {rgba8:name for name, rgba8 in BuiltinColors.items()} TypeError: unhashable type: 'Color' TypeError: unhashable type: 'Color' File ""/usr/lib/ucsf-chimerax-daily/lib/python3.9/site- packages/chimerax/core/colors.py"", line 779, in _color_names = {rgba8:name for name, rgba8 in BuiltinColors.items()} See log for complete Python traceback. > listinfo colors > info colors Expected a models specifier or a keyword > color list No custom colors. 248 builtin colors: alice blue , aliceblue , antique white , antiquewhite , aqua , aquamarine , azure , beige , bisque , black , blanched almond , blanchedalmond , blue , blue violet , blueviolet , brown , burly wood , burlywood , cadet blue , cadetblue , chartreuse , chocolate , coral , cornflower blue , cornflowerblue , cornsilk , crimson , cyan , dark blue , dark cyan , dark goldenrod , dark gray , dark green , dark grey , dark khaki , dark magenta , dark olive green , dark orange , dark orchid , dark red , dark salmon , dark sea green , dark seagreen , dark slate blue , dark slate gray , dark slate grey , dark turquoise , dark violet , darkblue , darkcyan , darkgoldenrod , darkgray , darkgreen , darkgrey , darkkhaki , darkmagenta , darkolivegreen , darkorange , darkorchid , darkred , darksalmon , darkseagreen , darkslateblue , darkslategray , darkslategrey , darkturquoise , darkviolet , deep pink , deep sky blue , deep skyblue , deeppink , deepskyblue , dim gray , dim grey , dimgray , dimgrey , dodger blue , dodgerblue , fire brick , firebrick , floral white , floralwhite , forest green , forestgreen , fuchsia , gainsboro , ghost white , ghostwhite , gold , goldenrod , gray , green , green yellow , greenyellow , grey , honeydew , hot pink , hotpink , indian red , indianred , indigo , ivory , khaki , lavender , lavender blush , lavenderblush , lawn green , lawngreen , lemon chiffon , lemonchiffon , light blue , light coral , light cyan , light goldenrod yellow , light gray , light green , light grey , light pink , light salmon , light sea green , light seagreen , light sky blue , light skyblue , light slate gray , light slate grey , light steel blue , light yellow , lightblue , lightcoral , lightcyan , lightgoldenrodyellow , lightgray , lightgreen , lightgrey , lightpink , lightsalmon , lightseagreen , lightskyblue , lightslategray , lightslategrey , lightsteelblue , lightyellow , lime , lime green , limegreen , linen , magenta , maroon , medium aquamarine , medium blue , medium orchid , medium purple , medium sea green , medium seagreen , medium slate blue , medium spring green , medium turquoise , medium violet red , mediumaquamarine , mediumblue , mediumorchid , mediumpurple , mediumseagreen , mediumslateblue , mediumspringgreen , mediumturquoise , mediumvioletred , midnight blue , midnightblue , mint cream , mintcream , misty rose , mistyrose , moccasin , navajo white , navajowhite , navy , old lace , oldlace , olive , olive drab , olivedrab , orange , orange red , orangered , orchid , pale goldenrod , pale green , pale turquoise , pale violet red , palegoldenrod , palegreen , paleturquoise , palevioletred , papaya whip , papayawhip , peach puff , peachpuff , peru , pink , plum , powder blue , powderblue , purple , rebecca purple , rebeccapurple , red , rosy brown , rosybrown , royal blue , royalblue , saddle brown , saddlebrown , salmon , sandy brown , sandybrown , sea green , seagreen , seashell , sienna , silver , sky blue , skyblue , slate blue , slate gray , slate grey , slateblue , slategray , slategrey , snow , spring green , springgreen , steel blue , steelblue , tan , teal , thistle , tomato , transparent , turquoise , violet , wheat , white , white smoke , whitesmoke , yellow , yellow green , and yellowgreen . Fetching compressed palette -20,""dodger from http://www.colourlovers.com/api/palettes?keywords=-20%2C%22dodger&format=json&numResults=100 Could not find palette -20,""dodger at COLOURlovers.com using keyword search Fetching compressed palette -20,dodger from http://www.colourlovers.com/api/palettes?keywords=-20%2Cdodger&format=json&numResults=100 Could not find palette -20,dodger at COLOURlovers.com using keyword search > mlp #1/A key true palette -20,dodgerblue:0,white:20,orange red Expected a keyword > mlp #1/A key true palette -20,dodgerblue:0,white:20,orangered Map values for surface ""AF-P06400-F1-model_v1_PoketDomain.pdb_A SES surface"": minimum -27.63, mean -5.355, maximum 22.11 Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax-daily/lib/python3.9/site- packages/chimerax/cmd_line/tool.py"", line 297, in execute cmd.run(cmd_text) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.9/site- packages/chimerax/core/commands/cli.py"", line 2856, in run result = ci.function(session, **kw_args) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.9/site- packages/chimerax/mlp/mlp.py"", line 92, in mlp show_key(session, cmap) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.9/site- packages/chimerax/color_key/cmd.py"", line 161, in show_key key_arg = ' '.join([StringArg.unparse((""%s:"" + v_fmt) % (color_name(rgba_to_rgba8(c)), dv)) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.9/site- packages/chimerax/color_key/cmd.py"", line 161, in key_arg = ' '.join([StringArg.unparse((""%s:"" + v_fmt) % (color_name(rgba_to_rgba8(c)), dv)) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.9/site- packages/chimerax/core/colors.py"", line 779, in color_name _color_names = {rgba8:name for name, rgba8 in BuiltinColors.items()} File ""/usr/lib/ucsf-chimerax-daily/lib/python3.9/site- packages/chimerax/core/colors.py"", line 779, in _color_names = {rgba8:name for name, rgba8 in BuiltinColors.items()} TypeError: unhashable type: 'Color' TypeError: unhashable type: 'Color' File ""/usr/lib/ucsf-chimerax-daily/lib/python3.9/site- packages/chimerax/core/colors.py"", line 779, in _color_names = {rgba8:name for name, rgba8 in BuiltinColors.items()} See log for complete Python traceback. OpenGL version: 4.6 (Core Profile) Mesa 21.0.3 OpenGL renderer: AMD RENOIR (DRM 3.40.0, 5.11.0-38-generic, LLVM 12.0.0) OpenGL vendor: AMD Manufacturer: LENOVO Model: 20UJS06300 OS: Ubuntu 20.04 focal Architecture: 64bit ELF Virutal Machine: none CPU: 12 AMD Ryzen 5 PRO 4650U with Radeon Graphics Cache Size: 512 KB Memory: total used free shared buff/cache available Mem: 7.0Gi 6.0Gi 287Mi 122Mi 696Mi 607Mi Swap: 7.4Gi 6.3Gi 1.1Gi Graphics: 06:00.0 VGA compatible controller [0300]: Advanced Micro Devices, Inc. [AMD/ATI] Renoir [1002:1636] (rev d3) Subsystem: Lenovo Renoir [17aa:5082] Kernel driver in use: amdgpu Locale: ('en_US', 'UTF-8') PyQt5 5.15.2, Qt 5.15.2 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 Babel: 2.9.1 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2021.5.30 cftime: 1.5.0 chardet: 4.0.0 ChimeraX-AddCharge: 1.1.4 ChimeraX-AddH: 2.1.10 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.2.2 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.29.1 ChimeraX-AtomicLibrary: 4.1.4 ChimeraX-AtomSearch: 2.0 ChimeraX-AtomSearchLibrary: 1.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.0 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.5.3 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.1 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.1 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.4.1 ChimeraX-CommandLine: 1.1.5 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.3.dev202109060834 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.1 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.2.1 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1.4 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.1.1 ChimeraX-Help: 1.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0 ChimeraX-Label: 1.1 ChimeraX-LinuxSupport: 1.0 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.4 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 2.0.1 ChimeraX-MDcrds: 2.5 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.4 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.1 ChimeraX-ModelPanel: 1.1 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.2 ChimeraX-OpenCommand: 1.7 ChimeraX-PDB: 2.6.1 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.1 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.4.3 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.1 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.6 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1 ChimeraX-ToolshedUtils: 1.2 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.12 ChimeraX-uniprot: 2.2 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.0.1 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.4 cxservices: 1.1 cycler: 0.10.0 Cython: 0.29.23 decorator: 5.0.9 distlib: 0.3.1 distro: 1.5.0 docutils: 0.17.1 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 3.4.0 html2text: 2020.1.16 idna: 2.10 ihm: 0.20 imagecodecs: 2021.4.28 imagesize: 1.2.0 ipykernel: 5.5.5 ipython: 7.23.1 ipython-genutils: 0.2.0 jedi: 0.18.0 Jinja2: 2.11.3 jupyter-client: 6.1.12 jupyter-core: 4.7.1 kiwisolver: 1.3.2 line-profiler: 3.3.0 lxml: 4.6.3 lz4: 3.1.3 MarkupSafe: 1.1.1 matplotlib: 3.4.2 matplotlib-inline: 0.1.2 msgpack: 1.0.2 netCDF4: 1.5.6 networkx: 2.6.2 numexpr: 2.7.3 numpy: 1.21.0 openvr: 1.16.801 packaging: 21.0 ParmEd: 3.2.0 parso: 0.8.2 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 8.2.0 pip: 21.1.1 pkginfo: 1.7.0 prompt-toolkit: 3.0.20 psutil: 5.8.0 ptyprocess: 0.7.0 pycollada: 0.7.1 pydicom: 2.1.2 Pygments: 2.9.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 2.4.7 PyQt5-commercial: 5.15.2 PyQt5-sip: 12.8.1 PyQtWebEngine-commercial: 5.15.2 python-dateutil: 2.8.1 pytz: 2021.1 pyzmq: 22.2.1 qtconsole: 5.1.0 QtPy: 1.11.0 RandomWords: 0.3.0 requests: 2.25.1 scipy: 1.6.3 setuptools: 57.0.0 sfftk-rw: 0.7.1 six: 1.16.0 snowballstemmer: 2.1.0 sortedcontainers: 2.4.0 Sphinx: 4.0.1 sphinx-autodoc-typehints: 1.12.0 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-jurko: 0.6 tables: 3.6.1 tifffile: 2021.4.8 tinyarray: 1.2.3 tornado: 6.1 traitlets: 5.1.0 urllib3: 1.26.6 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.36.2 wheel-filename: 1.3.0 }}} " defect closed normal Core duplicate Eric Pettersen all ChimeraX