id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 5475 Out of memory saving large image elzbieta.wator@… Tom Goddard "{{{ The following bug report has been submitted: Platform: Windows-10-10.0.19041 ChimeraX Version: 1.2.5 (2021-05-24 04:13:57 UTC) Description (Describe the actions that caused this problem to occur here) Trying to save the image in high res Log: UCSF ChimeraX version: 1.2.5 (2021-05-24) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open > J:/Projekty/DHS_K329A_ELF1_cryoEM_022021/FINAL_MODEL/COMPLEX_FINAL_MODEL.pdb > J:/Projekty/DHS_K329A_ELF1_cryoEM_022021/FINAL_MODEL/DHS_complex.pdb > J:/Projekty/DHS_K329A_ELF1_cryoEM_022021/FINAL_MODEL/ELF_complex.pdb Summary of feedback from opening J:/Projekty/DHS_K329A_ELF1_cryoEM_022021/FINAL_MODEL/COMPLEX_FINAL_MODEL.pdb --- warning | Ignored bad PDB record found on line 12125 END Summary of feedback from opening J:/Projekty/DHS_K329A_ELF1_cryoEM_022021/FINAL_MODEL/DHS_complex.pdb --- warning | Ignored bad PDB record found on line 11359 END Summary of feedback from opening J:/Projekty/DHS_K329A_ELF1_cryoEM_022021/FINAL_MODEL/ELF_complex.pdb --- warning | Ignored bad PDB record found on line 1066 END Chain information for COMPLEX_FINAL_MODEL.pdb #1 --- Chain | Description A | No description available B | No description available C | No description available D | No description available E | No description available Chain information for DHS_complex.pdb #2 --- Chain | Description A | No description available B | No description available C | No description available D | No description available Chain information for ELF_complex.pdb #3 --- Chain | Description E | No description available > Coloring complex: Unknown command: Coloring complex: > colour #7/E #ad7b93 > colour #7/A #8dabcc > colour #7/B #d7bc73 > colour #7/C #b15c63 > colour #7/D #55926e > colour #1/E #ad7b93 > colour #1/A #8dabcc > colour #1/B #d7bc73 > colour #1/C #b15c63 > colour #1/D #55926e > colour #1/D #667c94 > colour #1/D #435161 > colour #1/C #8f7c4c > set bgColor white > show atoms > hide atoms > show cartoons > hide #!2 models > hide #3 models > graphics silhouettes true > lighting simple > lighting soft > lighting flat > colour #1/D #4b7383 > lighting flat > lighting full > open J:/Projekty/DHS_K329A_ELF1_cryoEM_022021/J147_inverted_finalmap.mrc Opened J147_inverted_finalmap.mrc as #4, grid size 256,256,256, pixel 0.86, shown at level 0.106, step 1, values float32 > surface dust #4 > volume #4 level 0.12 > color #!1 bychain > color #!1 bychain > color #!1 bychain > colour #1/D #4b7383 > colour #1/C #8f7c4c > colour #1/B #d7bc73 > colour #1/A #8dabcc > colour #1/E #ad7b93 > color zone #4 near #1 distance 5.16 > volume #4 level 0.15 > volume #4 level 0.16 > vop #4 rmslevel 3.5 > surface dust #4 4 Expected a keyword > surface dust #4 size 4 > surface dust #4 size 9 > surface dust #4 size 10 > surface dust #4 size 15 > surface dust #4 size 20 > hide #!4 models > show #!4 models > hide #!1 models > show #!1 models > lighting soft > lighting soft > lighting simple > lighting soft > lighting full > set bgColor black > set bgColor black > set bgColor white > show #!1 cartoons > hide #!4 models > lighting simple > lighting soft > show #!4 models > volume style surface > graphics silhouettes false > graphics silhouettes true > graphics silhouettes false > lighting shadows true intensity 0.5 > lighting shadows false > lighting flat > lighting flat > lighting full > lighting soft > graphics silhouettes false > lighting shadows true intensity 0.5 > graphics silhouettes true > graphics silhouettes false > lighting simple > lighting simple > colour #1/D #536579 > hide #!4 models Color zone shortcut requires 1 displayed atomic model and 1 map, got 1 atomic models, 0 maps. > show #!4 models > colour #1/D #536579 > color zone #4 near #1 distance 5.16 > surface dust #4 size 8.6 > surface dust #4 size 8.6 > surface dust #4 size 8.6 > surface dust #4 size 8.6 > colour #1/C #f7d884 > color zone #4 near #1 distance 5.16 > colour #1/C #8f7c4c > color zone #4 near #1 distance 5.16 > colour #1/B #efd264 > colour #1/C #a1ba9a > colour #1/D #c0bcb6 > color zone #4 near #1 distance 5.16 > lighting simple > lighting soft > lighting full > lighting flat > lighting shadows true intensity 0.5 > graphics silhouettes false > lighting soft > lighting full > graphics silhouettes true > lighting soft > lighting full > lighting soft > surface dust #4 size 15 > lighting simple > lighting soft > lighting flat > lighting full > lighting soft > lighting shadows true intensity 0.5 > lighting shadows false > lighting shadows true > lighting shadows false > lighting shadows true > lighting shadows false > save C:\Users\Admin\Desktop\image4.png supersample 3 > hide #!4 models > save C:\Users\Admin\Desktop\image5.png supersample 3 > lighting shadows true > graphics silhouettes false > lighting soft > lighting soft > lighting simple > lighting full > lighting flat > lighting shadows true intensity 0.5 > graphics silhouettes false QMainWindowLayout::tabPosition called with out-of-bounds value '0' > lighting flat > lighting flat > lighting full > lighting soft > lighting full > lighting soft > lighting gentle > save C:\Users\Admin\Desktop\image6.png supersample 3 > show #!4 models > hide #!1 models > save C:\Users\Admin\Desktop\image7.png supersample 3 > lighting simple > lighting soft > lighting full > lighting flat > lighting shadows true intensity 0.5 > graphics silhouettes false > lighting gentle > graphics silhouettes true > lighting shadows true intensity 0.5 > lighting flat > lighting full > lighting soft > lighting simple > lighting soft > lighting full > lighting flat > lighting shadows true intensity 0.5 > graphics silhouettes false > lighting gentle > show #!1 models > hide #!4 models > show #!4 models > hide #!1 models > show #!1 models > hide #!1 models > save C:\Users\Admin\Desktop\image8.png supersample 3 > hide #!4 models > show #!1 models > graphics silhouettes true > save C:\Users\Admin\Desktop\image9.png supersample 3 > toolshed show > view > ui tool show ""Basic Actions"" Non-native QFileDialog supports only local files Non-native QFileDialog supports only local files > save C:/Users/Admin/Desktop/obrazki_complex/overall_complex.positions Must specify models when saving positions file C:/Users/Admin/Desktop/obrazki_complex/overall_complex.positions. > show #!4 models > lighting flat > lighting flat > graphics silhouettes false > lighting flat > lighting flat > lighting full > lighting soft > graphics silhouettes false > lighting gentle > save overal_complex models #1 #4 [ format positions ] Cannot determine format for 'overal_complex' > save overal_complex models #1 #4 [ .positions ] Cannot determine format for 'overal_complex' > save overal_complex models #1 #4 .positions] Cannot determine format for 'overal_complex' > save overal_complex models #1 #4 .positions Cannot determine format for 'overal_complex' > save overal_complex models #1 #4 [.positions] Cannot determine format for 'overal_complex' > save overal_complex models #1 #4 [ format positions ] [ childModels true | > false ] Cannot determine format for 'overal_complex' > save overal_complex models #1 #4 [ format positions ] [ childModels true ] Cannot determine format for 'overal_complex' > save overal_complex.positions models #1 #4 [ format positions ] [ > childModels true ] Expected a keyword > save overal_complex.positions models #1 #4 > turn x 90 > turn x -90 > turn y 90 > turn y 120 > turn y -180 > turn z 90 > turn z -90 > turn x 90 > save overal_complex_x90.positions models #1 #4 > pwd Current working directory is: C:\ProgramData\ChimeraX QWindowsNativeFileDialogBase::shellItem : Unhandled scheme: ""data"" > open C:/ProgramData/ChimeraX/overal_complex.positions Must specify models when opening positions file C:/ProgramData/ChimeraX/overal_complex.positions. > open overal_complex.positions models #1 #4 Set 2 positions > open overal_complex.positions models #1 Set 2 position for model COMPLEX_FINAL_MODEL.pdb > open overal_complex.positions models #1 [ childModels false ] [ matchNames > false ] Expected a keyword > open overal_complex.positions models #1 [ childModels false ] [ matchNames > false ] Expected a keyword > open overal_complex.positions models #1 [ childModels false ] [ matchNames > false ] Expected a keyword > ui tool show ""Map Coordinates"" > hide #!1 models > show #!1 models > hide #!1 models > hide #!4 models > show #!1 models > graphics silhouettes true > cartoon style #1 xsection oval modeHelix default > cartoon style #1 xsection rectangle modeHelix default > cartoon style #1 modeHelix tube sides 20 > cartoon style #1 modeHelix tube sides 20 > cartoon style (#1 & coil) xsection oval > cartoon style #1 xsection barbell modeHelix default > cartoon style #1 xsection oval modeHelix default > show #!2 models > show #3 models > colour #2/B #efd264 > colour #2/C #a1ba9a > colour #2/D #c0bcb6 > colour #2/A #8dabcc > colour #3/E #ad7b93 > hide #!1 models > view orient > view orient > view orient > turn x 90 > turn x 90 > view orient > view > view > view > view > turn x 90 > view > view > view > view > view orient > turn y 90 > turn y -90 > turn z -90 > turn z 90 > turn x 180 > turn y 180 > turn y 180 > turn y 90 > turn y 90 > turn y 90 > turn y 90 > turn y 90 > view orient > turn y 90 > turn x 90 > turn x 90 > turn z 90 > turn z 180 > turn z 3 > turn z 2 > turn z -1 > view orient > view > turn y 90 > turn x 90 > turn x 90 > turn z 90 > turn z 180 > turn z 3 > turn z 2 > turn z -1 > save C:\Users\Admin\Desktop\image10.png supersample 3 > hide #!2 models > hide #3 models > show #!4 models > graphics silhouettes false > save C:\Users\Admin\Desktop\image11.png supersample 3 > save volume_overall.png 2500 3000 600 true Expected a keyword > save volume_overall.png widith 2500 height 3000 pixelSize 600 Expected a keyword > save volume_overall.png width 2500 height 3000 pixelSize 600 Cannot specify width or height if pixel_size is given > save volume_overall.png width 2500 height 3000 pixelSize 600 Cannot specify width or height if pixel_size is given > save volume_overall.png width 2500 height 3000 pixelSize 1.2 Cannot specify width or height if pixel_size is given > save volume_overall.png width 2500 height 3000 > save volume_overall.png width 25000 height 30000 supersample 9 > transparentBackground true > hide #!4 models > show #3 models > show #!2 models > graphics silhouettes true > save structure_overall.png width 25000 height 30000 supersample 9 > transparentBackground true Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site- packages\chimerax\cmd_line\tool.py"", line 280, in execute cmd.run(cmd_text) File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2852, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site- packages\chimerax\save_command\cmd.py"", line 75, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2852, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site- packages\chimerax\save_command\cmd.py"", line 87, in provider_save provider_info.bundle_info.run_provider(session, provider_info.format_name, File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site- packages\chimerax\image_formats\\__init__.py"", line 45, in save save_image(session, path, format_name, **kw) File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site- packages\chimerax\image_formats\save.py"", line 119, in save_image i = view.image(width, height, supersample=supersample, File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site- packages\chimerax\graphics\view.py"", line 456, in image self.draw(c, drawings, swap_buffers = False) File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site- packages\chimerax\graphics\view.py"", line 165, in draw self._draw_scene(camera, drawings) File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site- packages\chimerax\graphics\view.py"", line 212, in _draw_scene silhouette.start_silhouette_drawing(r) File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 1745, in start_silhouette_drawing fb = self._silhouette_framebuffer(r) File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 1781, in _silhouette_framebuffer dt.initialize_depth(size, depth_compare_mode=False) File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 2904, in initialize_depth self.initialize_texture(size, format, iformat, tdtype, ncomp, File ""C:\Program Files\ChimeraX 1.2.5\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 2930, in initialize_texture GL.glTexImage2D(gl_target, 0, iformat, size[0], size[1], 0, format, File ""src/latebind.pyx"", line 39, in OpenGL_accelerate.latebind.LateBind.__call__ File ""src/wrapper.pyx"", line 318, in OpenGL_accelerate.wrapper.Wrapper.__call__ File ""src/wrapper.pyx"", line 311, in OpenGL_accelerate.wrapper.Wrapper.__call__ File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1285, description = b'za ma\xb3o pami\xeaci', baseOperation = glTexImage2D, pyArgs = ( GL_TEXTURE_2D, 0, GL_DEPTH_COMPONENT24, 25000, 30000, 0, GL_DEPTH_COMPONENT, GL_FLOAT, c_void_p(None), ), cArgs = ( GL_TEXTURE_2D, 0, GL_DEPTH_COMPONENT24, 25000, 30000, 0, GL_DEPTH_COMPONENT, GL_FLOAT, c_void_p(None), ), cArguments = ( GL_TEXTURE_2D, 0, GL_DEPTH_COMPONENT24, 25000, 30000, 0, GL_DEPTH_COMPONENT, GL_FLOAT, c_void_p(None), ) ) OpenGL.error.GLError: GLError( err = 1285, description = b'za ma\xb3o pami\xeaci', baseOperation = glTexImage2D, pyArgs = ( GL_TEXTURE_2D, 0, GL_DEPTH_COMPONENT24, 25000, 30000, 0, GL_DEPTH_COMPONENT, GL_FLOAT, c_void_p(None), ), cArgs = ( GL_TEXTURE_2D, 0, GL_DEPTH_COMPONENT24, 25000, 30000, 0, GL_DEPTH_COMPONENT, GL_FLOAT, c_void_p(None), ), cArguments = ( GL_TEXTURE_2D, 0, GL_DEPTH_COMPONENT24, 25000, 30000, 0, GL_DEPTH_COMPONENT, GL_FLOAT, c_void_p(None), ) ) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 462.31 OpenGL renderer: GeForce GTX 1060 with Max-Q Design/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Manufacturer: Dell Inc. Model: G5 5587 OS: Microsoft Windows 10 Home (Build 19042) Memory: 34,129,870,848 MaxProcessMemory: 137,438,953,344 CPU: 12 Intel(R) Core(TM) i7-8750H CPU @ 2.20GHz OSLanguage: pl-PL Locale: ('pl_PL', 'cp1250') PyQt5 5.15.2, Qt 5.15.2 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 Babel: 2.9.1 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2020.12.5 cftime: 1.5.0 chardet: 3.0.4 ChimeraX-AddCharge: 1.0.1 ChimeraX-AddH: 2.1.6 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.13.2 ChimeraX-AtomicLibrary: 3.1.3 ChimeraX-AtomSearch: 2.0 ChimeraX-AtomSearchLibrary: 1.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 1.1 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.5.2 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.1 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.1 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.2.1 ChimeraX-CommandLine: 1.1.4 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.2.5 ChimeraX-CoreFormats: 1.0 ChimeraX-coulombic: 1.1.1 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.1 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1.3 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.0 ChimeraX-Hbonds: 2.1 ChimeraX-Help: 1.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.0 ChimeraX-ImageFormats: 1.1 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-Label: 1.0 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.0.2 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.0 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 1.2.1 ChimeraX-MDcrds: 2.2 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.3 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.0.1 ChimeraX-ModelPanel: 1.0.1 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.1 ChimeraX-OpenCommand: 1.5 ChimeraX-PDB: 2.4.1 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.1 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0.1 ChimeraX-PubChem: 2.0.1 ChimeraX-ReadPbonds: 1.0 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.4 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SeqView: 2.3 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.0 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.0.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.3.1 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.0.1 ChimeraX-ToolshedUtils: 1.2 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.7.6 ChimeraX-uniprot: 2.1 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.3 comtypes: 1.1.7 cxservices: 1.0 cycler: 0.10.0 Cython: 0.29.21 decorator: 5.0.9 distlib: 0.3.1 docutils: 0.16 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 2.10.0 html2text: 2020.1.16 idna: 2.10 ihm: 0.17 imagecodecs: 2020.5.30 imagesize: 1.2.0 ipykernel: 5.3.4 ipython: 7.18.1 ipython-genutils: 0.2.0 jedi: 0.17.2 Jinja2: 2.11.2 jupyter-client: 6.1.7 jupyter-core: 4.7.1 kiwisolver: 1.3.1 line-profiler: 2.1.2 lxml: 4.6.2 lz4: 3.1.0 MarkupSafe: 2.0.1 matplotlib: 3.3.2 msgpack: 1.0.0 netCDF4: 1.5.4 networkx: 2.5 numexpr: 2.7.3 numpy: 1.19.2 numpydoc: 1.1.0 openvr: 1.14.1501 packaging: 20.9 ParmEd: 3.2.0 parso: 0.7.1 pickleshare: 0.7.5 Pillow: 7.2.0 pip: 21.0.1 pkginfo: 1.5.0.1 prompt-toolkit: 3.0.18 psutil: 5.7.2 pycollada: 0.7.1 pydicom: 2.0.0 Pygments: 2.7.1 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 2.4.7 PyQt5-commercial: 5.15.2 PyQt5-sip: 12.8.1 PyQtWebEngine-commercial: 5.15.2 python-dateutil: 2.8.1 pytz: 2021.1 pywin32: 228 pyzmq: 22.0.3 qtconsole: 4.7.7 QtPy: 1.9.0 RandomWords: 0.3.0 requests: 2.24.0 scipy: 1.5.2 setuptools: 50.3.2 sfftk-rw: 0.6.7.dev1 six: 1.15.0 snowballstemmer: 2.1.0 sortedcontainers: 2.2.2 Sphinx: 3.2.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-jurko: 0.6 tables: 3.6.1 tifffile: 2020.9.3 tinyarray: 1.2.3 tornado: 6.1 traitlets: 5.0.5 urllib3: 1.25.11 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.36.0 wheel-filename: 1.3.0 WMI: 1.5.1 }}} " defect closed normal Input/Output limitation all ChimeraX